github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

added labelfree mzq stuff

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11762 6adb6e08-d915-0410-...

01c0079c2eb9e26f290fb711f77991746daf49b5 authored about 11 years ago by Mathias Walzer <[email protected]>

Merged bug fix (r11759:11760) from potential Release1.11.1 branch to trunk

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11761 6adb6e08-d915-0410...

45635d2332c6c3d98431b32c8f6bd650f2b285fc authored about 11 years ago by Johannes Veit <[email protected]>

[FIX-#606] better fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11.1@11760 6a...

9f7579a0c1d5d18b280e82eea3353872bc60bff8 authored about 11 years ago by Johannes Veit <[email protected]>

[FIX] initialized some uninitialized variables in constructor

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11759 6adb6e08-d915-0410-...

23ccf07e11019eb013de23790c39915efa0c1654 authored about 11 years ago by Timo Sachsenberg <[email protected]>

[FIX-#609] fixed some problems with protein modifications in MascotAdapterOnline

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11758 6adb6e08-d915-0410-...

82d1bdb1ddfc3e916757a66baacbdf8c57679803 authored about 11 years ago by Hendrik Weisser <[email protected]>

[PARAM] exposed additional options for Mascot export

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11757 6adb6e08-d915-0410-...

b96d004669f3ecac82232b70cd5db9a7b58a1731 authored about 11 years ago by Hendrik Weisser <[email protected]>

[BUILD] MSVS fix (remove DLL Import/Export for template class)

- remove OPENMS_DLLAPI for template class

git-svn-id: https://open-ms.svn.sourceforge.net/svnro...

090821621c0b3687e0984c71c99348e3022c8434 authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] Valgrind suppression files

run for example as:

valgrind --tool=memcheck --suppressions=./tools/valgrind/openms_external.su...

1a53f4858d29eae0d1ad05620818e5e5893bd595 authored about 11 years ago by Hannes Roest <[email protected]>

[BUILD] allow the addition of external libraries to pyOpenMS

- allow to compile and link external libraries with pyOpenMS

git-svn-id: https://open-ms.svn.so...

d51a7276234697466b2a739b0e853740ab1f4ead authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] fix test and windows compile (hopefully)

- fix test
- create default instance of OnDiscMSExperiment with empty file -> need
to catch th...

403a3c930e7de6be8ed9d8b7be5acd5a15d7e471 authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE] added parameter flag for feature intensity normalization in FeatureBasedLP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11752 6adb6e08-d915-0410-...

b84578efb2ae668a45be690a8ac48877cd8153b0 authored about 11 years ago by Alexandra Zerck <[email protected]>

[TEST] LowMem PeakPicker (Random Access) tests

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11751 6adb6e08-d915-0410-...

6f6929172906e8ead68d477afccda6f6bd4c8107 authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE] add LowMem PeakPicker (random access)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11750 6adb6e08-d915-0410-...

6879e870a45cbd0fcc3851634edc56a5ca4f45ec authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE] add fill data option

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11749 6adb6e08-d915-0410-...

c42ca27de59129190dff0af3f8c1748c08b784d2 authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE] add OnDisc MSExperiment

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11748 6adb6e08-d915-0410-...

f0fbed0dd2a51a3e29bba9db822b9e0377e5b975 authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] patch indexed mzML

- add copy-constructor and filename

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/ope...

ac69451a36c7f5b3ef93f73e45e60c9e56471ffa authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] documentation and NOP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11746 6adb6e08-d915-0410-...

ff280f635767ba87fdbb3f26b1fa9eb7432fe88c authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] fix out-of-bound read/write

- fix access to array of size 255
- fix missing bracket

git-svn-id: https://open-ms.svn.sourcef...

2bc3d1739b087c008d73b9a9fcbecc7c71cc9b36 authored about 11 years ago by Hannes Roest <[email protected]>

[FIX,DOC] enhanced documentation, removed unused parameters

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11744 6adb6e08-d915-0410-...

968ce232d51a64e7a8107cfd3f672e8205555bda authored about 11 years ago by Alexandra Zerck <[email protected]>

[BUILD] try to fix Windows link issue

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11743 6adb6e08-d915-0410-...

8b9f2799aab8e7594849e8c4a124f1161b6a06f9 authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] enabled setting of inclusion charges for featureXML input

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11742 6adb6e08-d915-0410-...

63b2bdb22c9a5dc3fc5dc941b6e3cefb77f2b25f authored about 11 years ago by Alexandra Zerck <[email protected]>

Merged bug fix (11739:11740) from Release1.11.1 to trunk

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11741 6adb6e08-d915-0410...

e8981df65916246d5f7386d51fb7e2cf905aa6d7 authored about 11 years ago by Johannes Veit <[email protected]>

[FIX] mzML was not listed in the supported file types of XMLValidator

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11.1@11740 6a...

daa78d72154fe91721db57bdaf05795563148eda authored about 11 years ago by Johannes Veit <[email protected]>

[FIX] fix build error

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11739 6adb6e08-d915-0410-...

dc157b582a5fde32c6708a640e7664295da1baed authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] fix pyOpenMS

- add PeakPickerIterative
- add PeakPickerMRM
- fix SpectrumAccessOpenMS

git-svn-id: https://op...

e835b7bd3d910cc5788daf0154240df51626db1b authored about 11 years ago by Hannes Roest <[email protected]>

[NOP] minor fixes, typo

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11736 6adb6e08-d915-0410-...

81ea878fa3dfaa3611762fef07028ead15bfa4a4 authored about 11 years ago by Hannes Roest <[email protected]>

[REVERT] undo removal of PeakPickerRapid (r11639)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11735 6adb6e08-d915-0410-...

89d03b11325e93e9b1923a2a74f45d7558625b97 authored about 11 years ago by Hannes Roest <[email protected]>

[REVERT] undo 11709, re-add files

- re-add LowMemPeakPickerHiRes
- re-add MSDataWritingConsumer, MSDataTransformingConsumer and
...

eea598694b2097856df8183090f4a4f86cb5d165 authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] fix typos in the docu

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11733 6adb6e08-d915-0410-...

9ce619e54c694abd0b4b9b077862734293c186b0 authored about 11 years ago by Hannes Roest <[email protected]>

[NOP]nop

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11732 6adb6e08-d915-0410...

9d31b0b7e66c2e54d19cc3a915b369f2831baad1 authored about 11 years ago by Johannes Veit <[email protected]>

[FEATURE] Rotate TOPPAS edge labels by 180 degrees if arrow points from right to left

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11730 6adb6e08-d915-0410...

e1c3e769623f504ccd32d9170ba6a4c4f6bb36ae authored about 11 years ago by Johannes Veit <[email protected]>

Merged bugfix release branch 1.11.1 back into trunk (11724:11725)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11727 6adb6e08-d915-0410...

6be54eda36b478be562edb0bc1f72f4c8b118346 authored about 11 years ago by Johannes Veit <[email protected]>

[FIX-#606] Fix TOPPAS crash during edge creation.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11.1@11725 6a...

1f8761a93cea7f2deafb309676d5853f6c846f94 authored about 11 years ago by Johannes Veit <[email protected]>

[NOP] created potential 1.11.1 bug fix release branch

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11.1@11724 6a...

8f3850d38e5411531ed6d9031a1eb132c2753f40 authored about 11 years ago by Stephan Aiche <[email protected]>

[FIX] fixed small bug in jumping window mower

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11711 6adb6e08-d915-0410-...

7ef8174b0a422b9efd26bc02dbfcde87f86b187f authored about 11 years ago by Timo Sachsenberg <[email protected]>

[BUILD,FIX] Trunk compiles again from merge [11708]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11709 6adb6e08-d915-0410-...

3a409d97e1b7b496f697595cf042dcabdda65080 authored about 11 years ago by George Rosenberger <[email protected]>

Merged release branch into trunk 11472:11703

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11707 6adb6e08-d915-0410-...

2b77d3ac7a2b8e34e532b139731a39940c683582 authored about 11 years ago by George Rosenberger <[email protected]>

[DOC] added #603 to list of fixed bugs (addendum to r11699)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11700 6adb6...

108c0f189810db5eb6a897ff843559a582122825 authored about 11 years ago by Hendrik Weisser <[email protected]>

[FIX-#603] showing peptide IDs now only shows peptide IDs, not feature indexes

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11699 6adb6...

4d2f3fccf3922e930acca85e610621585ddef2e8 authored about 11 years ago by Hendrik Weisser <[email protected]>

[FIX] fixed version info of pyopenms to 1.11

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11698 6adb6...

9a2e71444687140986c628ce79789b882e0ef4a0 authored about 11 years ago by Uwe Schmitt <[email protected]>

[FIX] preliminary fix for non matching libboost_math-* filenames when building pyopenms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11697 6adb6...

36f3b5a335c2522e90eb24110de02b445ae8cc81 authored about 11 years ago by Uwe Schmitt <[email protected]>

[DOC] added #598 to list of fixed bugs, improved appearance of the list

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11693 6adb6...

b27d90a2c2e73f8b5d9b498bf168b5c07d53509c authored about 11 years ago by Hendrik Weisser <[email protected]>

[DOC] minor doc improvements for macosx readme

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11692 6adb6...

b85113329f3e3fa307c9c2f8692fe5a3bae29fe4 authored about 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] added explicit template instantiation for windows dll required by pyopenms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11691 6adb6...

654642a813310ac5dc4ff2c7329f43134bb79cdf authored about 11 years ago by Stephan Aiche <[email protected]>

[FIX-#598] added check for incompatible parameters (and debug messages) (on behalf of hendrikweisser)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11690 6adb6...

efae59658f1acebe24745258b03f7d1ad45e4915 authored about 11 years ago by Stephan Aiche <[email protected]>

[DOC] small docu fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11688 6adb6...

9d90584c1697228750f2362638b0a50368281aa7 authored about 11 years ago by Hendrik Weisser <[email protected]>

[NOP] added missing item type to param schema

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11686 6adb6...

f472f892d63465396ef8587d761ff063b057268b authored about 11 years ago by Stephan Aiche <[email protected]>

[FIX-#595] by disabling OMP

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11685 6adb6...

eaef8575d72f66932c6546c2e46aabce4a505cee authored about 11 years ago by Chris Bielow <[email protected]>

[DOC] updated doxygen config to 1.8 and disabled markdown support to fix doxygen 1.8 related problems

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11677 6adb6...

417800286184f4180779c96bde651f0ed975da05 authored about 11 years ago by Stephan Aiche <[email protected]>

[DOC] removed listing of developer names on main page of documentation

* the list is mostly outdated
* also maintained on http://open-ms.sourceforge.net/team/contrib...

87741bac4df62aa9688becd42b33ff85b6fa2975 authored about 11 years ago by Stephan Aiche <[email protected]>

[DOC,BUILD] merged internal and global doc

* removed doc_internal target
* internal documentation is always build

git-svn-id: https://...

0abb713fe63284dce79e4084c49ca20ccf6106d3 authored about 11 years ago by Stephan Aiche <[email protected]>

[BUILD] stop cmake when MinGW or MSYS are detected

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11673 6adb6...

ccc5eb03c78b1a9c64743a647db07fcfe3b130fd authored about 11 years ago by Chris Bielow <[email protected]>

[TEST] additionally test findDoc() for build tree

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11671 6adb6...

4b6f25bfafa2e4d0349c74659c44e9276d52c810 authored about 11 years ago by Chris Bielow <[email protected]>

[FIX] File::findDoc fixed for non-doxygen platforms; addendum to [11666]

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11670 6adb6...

243cae33f9d8a6ac2b9293dd88d398e41f6dee3b authored about 11 years ago by Chris Bielow <[email protected]>

[DOC] explicitly mention MinGW as not supported

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11669 6adb6...

e1ff9d3a6b05163efbceb032a3dc4a364b6f4d7d authored about 11 years ago by Chris Bielow <[email protected]>

[FIX] Parameter updates of all TOPPAS example pipelines (to avoid warning messages and missing parameters)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11668 6adb6...

9e51eef0d6ff27f701891ff04925fa04d9f1449c authored about 11 years ago by Chris Bielow <[email protected]>

[FIX] TOPPAS ID example pipeline using correct data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11667 6adb6...

acc450fbdaf16d0ce347e982c4c2237301139f3d authored about 11 years ago by Chris Bielow <[email protected]>

[FIX-#523,API,TEST] fixed showURL behaviour in TOPPAS and TOPPView

* added File::findDoc method to search doc locations (incl. test)
* fall back to online docume...

daf5ba04b06eb54d700dc63b9083884c6b89beac authored about 11 years ago by Stephan Aiche <[email protected]>

[NOP] typos

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11665 6adb6...

99c5cc7bc83179259362f01711178bedeba36319 authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] added 1.11 CHANGELOG

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11664 6adb6...

2b86f30443c14fae2197a2fce820395c704911c6 authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] better error message for PeptideIndexer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11663 6adb6...

6c680f3424f53a2475417f05949bcc115880f31f authored about 11 years ago by Chris Bielow <[email protected]>

[FIX] fix pyOpenMS: push_back -> addSpectrum

- also add documentation
- replace the base url with /current_doxygen/html/

git-svn-id: https:/...

3dd2b5c5f4801e455c3e3f3a6961a6c052f520d4 authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] implemented correct handling of tabs in attributes in paramxml

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11661 6adb6...

b40fd09ddfe54367cc4b1a25130c64359041b293 authored about 11 years ago by Stephan Aiche <[email protected]>

[FIX-#593] workaround for TextExporter. The bug still remains (at least on Windows)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11658 6adb6...

eaa936071a287bbbb909ef808c6482ce09f692bb authored about 11 years ago by Chris Bielow <[email protected]>

[FIX-#583] work-around for Mascot 2.4.0 bug

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11656 6adb6...

86f74e18db22e8ab225dcf2d5388f38747adb87b authored about 11 years ago by Hendrik Weisser <[email protected]>

[FIX,BUILD] fixed problem introduced with switch to find modules instead of OpenMS' own find macro

* find(ZLIB|GLPK|GSL) did not search for debug libraries which lead to conflicts on win32
sy...

a3d6d0c1fe67a3d9e99383c22be167cbd03295ed authored about 11 years ago by Stephan Aiche <[email protected]>

[FIX] addendum to r11597 and fix for compatibility between IDFileConverter and MascotAdapterOnline (RT extraction)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11653 6adb6...

5e972e9f3a8f865ef7b85586bd9eaba00329467a authored about 11 years ago by Hendrik Weisser <[email protected]>

[FEATURE-#592] Lazy loading for indexedmzML

implements lazy loading of indexedmzML using the IndexedMzMLFile class.

- IndexedMzMLFile allow...

09973f2c597f7ffa452c28ccc082fadd827cb50e authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] pyOpenMS docu generator with link

the pyOpenMS documentation generator will now include a link to the full
HTML documentation of t...

aa7c88df8857b950742c1a1e5767ea2aaa0c26ff authored about 11 years ago by Hannes Roest <[email protected]>

[NOP] fixed some cppcheck warning

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11648 6adb6...

89362627d9ee9a17f86f910c0ef61d8a5f11a59b authored about 11 years ago by Timo Sachsenberg <[email protected]>

[NOP] cpplint style fix

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11647 6adb6...

e402683ea504110cb1a8443fcbbe9c20a9d210d9 authored about 11 years ago by Timo Sachsenberg <[email protected]>

[FIX] fixed compile issues with VS versions <9

* std::map::at is not supported in older VS versions

git-svn-id: https://open-ms.svn.sourcefor...

cb15652bc0e1624f1bda30bb90ca0a0cd91784c2 authored about 11 years ago by Stephan Aiche <[email protected]>

Fixed code-style violations in QCCalculator and QcFile.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11643 6adb6...

3356958452dcb5b258aa6d3900d08126df3a2455 authored about 11 years ago by Mathias Walzer <[email protected]>

Fixed QC tools to fit CV and extended pipelines. Added test for QcFile.

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11642 6adb6...

028a519bf13e1e9a0709c5968a9dc56e78eee060 authored about 11 years ago by Mathias Walzer <[email protected]>

adding a cv for qc

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11641 6adb6...

4022be084d294a7ac88f5ba3780586df0718cff4 authored about 11 years ago by Mathias Walzer <[email protected]>

[REMOVE] remove PeakPickerRapid from 1.11 Release

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11639 6adb6...

0e0cfbda0e351352a18cae6c6005caf9c54d933e authored about 11 years ago by Hannes Roest <[email protected]>

[DOC] new images for TOPPAS and some other GUI tools to reflect updated look and feel

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11638 6adb6...

bcbedf6fe8f580f4a91a2406ab7afa6066d702f8 authored about 11 years ago by Chris Bielow <[email protected]>

[TEST] indexedmzML test, FileFilter option

- FileFilter can now write indexedmzML or mzML
- test for both behaviors is added

git-svn-id: h...

cb5b05d60360a8aa2a77595316b7127e8ffd58d2 authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE-#581] ability to write indexedmzML

- getWriteIndex and setWriteIndex in PeakFileOptions control whether a
mzML or indexedmzML is ...

1590af276643ad3390a17d36c525a834bcae5eaf authored about 11 years ago by Hannes Roest <[email protected]>

[TEST] add test data for PeakPickerIterative

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11635 6adb6e08-d915-0410-...

969b57c160446b77c382f2b3333acd5ef7744703 authored about 11 years ago by Hannes Roest <[email protected]>

[FEATURE] PeakPickerIterative

- new PeakPicker for high-res TOF data

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/...

94ad22b3dc8a99e5d46c64e1b5545189db1ac19b authored about 11 years ago by Hannes Roest <[email protected]>

[FIX-#591, TEST] detect our own MGF files by file content

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11633 6adb6...

82abc96042b04b6f28ebd168e3221e3057cf2d97 authored about 11 years ago by Chris Bielow <[email protected]>

missing usage of boost shared pointer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11632 6adb6e08-d915-0410-...

9de879c9f440c5de9fcb268eed148af075dff62a authored about 11 years ago by Christian <[email protected]>

[FIX] extend MSDataWritingConsumer to chromatograms

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11631 6adb6e08-d915-0410-...

61870e453462d2f90f969d28c21d57632b4b7fb4 authored about 11 years ago by Hannes Roest <[email protected]>

[FIX] allow better control of PPHiRes parameters

- allow to set the SignalToNoise parameters
- allow to set the max spacing parameter

git-svn-id...

46d8223c67fabe4b5f4a7e65a0517fc4752523bc authored about 11 years ago by Hannes Roest <[email protected]>

[NOP] whitespace changes in comments

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/OpenMS@11629 6adb6e08-d915-0410-...

b21e132c12f9e3d8a12f41c231c8e40795aac1ee authored about 11 years ago by Hannes Roest <[email protected]>

[TEST] extended test for PeakPickerRapid. Seems some peaks are not collected as it should produce same output at PeakPickerHiRes file

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11627 6adb6...

61331ee65f291aabcbb62e2233aa9905f08c3a60 authored about 11 years ago by Timo Sachsenberg <[email protected]>

[FIX] fixed unnecessary dependency on win32api python module

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11625 6adb6...

f521a6a5ed85b0c04065b28b99689c8603238e07 authored about 11 years ago by Uwe Schmitt <[email protected]>

[DOC] typos and correctness for PeptideIndexer

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11623 6adb6...

780c32f5bb7436bb24306342249f6438436e40f5 authored about 11 years ago by Chris Bielow <[email protected]>

[FIX,TEST] addendum to [11621]; added test to build system

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11622 6adb6...

fe00eaa37ac186707b350bb089502bb3ae06ac97 authored over 11 years ago by Stephan Aiche <[email protected]>

[TEST] Added PeakPickerRapid_test (not finished yet)

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11621 6adb6...

dcfa2c52f0af7e8ebadc3d338845d63e85f99a49 authored over 11 years ago by Erhan Kenar <[email protected]>

[FIX] amend 11603, fix type

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11618 6adb6...

0d7a6fa56c8bbf8e49250a3b0074c04d0b6f7b16 authored over 11 years ago by Hannes Roest <[email protected]>

[FIX,LOG] added support for email field required by public mascot server

* includes some nop reformatting of the corresponding header
* improved error message when no ...

4dde106cbf79eeeee8993e93db0332d17e2f4d48 authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] made result_path an argument of getResults to clarify the program flow

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11616 6adb6...

27312a70ee13cc043f84233a86abb51452729bfe authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] removed obsolete access to hostname param since we have a member for this

* made boundary a proper member instead of permanently accessing param_

git-svn-id: https://op...

b326306a83e821b2f20575d31cccb3936160d05d authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL,DOC] documentation improvements explaining the overall program flow of MascotAdapterOnline

* only show error message in debug mode

git-svn-id: https://open-ms.svn.sourceforge.net/svnroo...

5141b64438618757d3238559115154dedbd03266 authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] MascotAdapterOnline now returns upon error instead of falling through to default signals/sots

* avoids overwriting mascot_xml_
* fix early return

git-svn-id: https://open-ms.svn.sourcefo...

e6b683f46c1b62c5e4ab2b2151ecff36637d1318 authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] remove non-asynchronous signals

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11612 6adb6...

9b9c22d3d0bcc6b34a79e74596e3d8cf8684ec9a authored over 11 years ago by Stephan Aiche <[email protected]>

[INTERNAL] improved mapping of scan ids to RT

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/open-ms/branches/Release1.11@11611 6adb6...

014e2260febeedcae5c94142f2d9479573f19dde authored over 11 years ago by Stephan Aiche <[email protected]>

[FEATURE] added support for ssl connections to MascotAdapterOnline

* removed debug define and comments

git-svn-id: https://open-ms.svn.sourceforge.net/svnroot/op...

9dbd08b3211b136ab55b80c8ce3eed930cd8923f authored over 11 years ago by Stephan Aiche <[email protected]>