Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
- use std::streampos which allows to address also larger files
96dea04d92a16610ec34e909f1176f5ae568be02 authored over 10 years ago by Hannes Roest <[email protected]>50cce9e71035fbf0e5a771b0cd242a28c3de890c authored over 10 years ago by Hannes Roest <[email protected]>
- use std::streampos to store positions in filestreams
- check for error condition before resize...
- catch error when seekg cannot go to the requested position and
re-throw a sensible error mes...
- also adopt header files and changed API in pyOpenMS code
a360280006a0e2818fc05f54f8d65816324e9ee7 authored over 10 years ago by Hannes Roest <[email protected]>Typo fixes in documentation and licence files
033411ff140e6f1bc9364831476ea324c1ee5394 authored over 10 years ago by Hannes Roest <[email protected]>38aa225bfbdd2506d9facd12c11a6803b42ddc58 authored over 10 years ago by Chris Bielow <[email protected]>
7f6cc1ce50e24f42c41f658d428eea8d29f95f36 authored over 10 years ago by Chris Bielow <[email protected]>
[INTERNAL] Feature/CachedMzML fixes
1d9746684253cb91af5c3561f6dafa8b821abbe5 authored over 10 years ago by Hannes Roest <[email protected]>
- remove non-ASCII characters
- comment out unused parameters
- Fixes an error introduced by multiple threads: under certain
conditions the global variable ...
- [TEST] test error conditions
- [TEST] make test faster
- fix header guards
- remove MAGIC_NUMB...
2b7122857248d80a4a2d9b2c6ad30b7171d8ab0f authored over 10 years ago by Hannes Roest <[email protected]>
fd7ac4de56b20f6d024e766500ca58f66ef2bd63 authored over 10 years ago by Hannes Roest <[email protected]>
67ef638c5bd28c3f657ee7848a98daa0eaaa3ba5 authored over 10 years ago by Hannes Roest <[email protected]>
dac5e0ebd80b05ca62c02caa0b1736b2f81314b1 authored over 10 years ago by Uwe Schmitt <[email protected]>
8fe59ad1f22b7aee730248d6206291bb766f405a authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
113bacd5ac738bd2dc2ce1fec4d8fe22f880dcfb authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
ff462d639d82154b205e5069679cd75fa1e8592f authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
c12df8cc942d9d61aec3ababefabb24d0644dba7 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
5d87e6ba743246dea9f17a18736792e6bf0f7431 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
ea900a36e5822097e369c9ca58f540de899baebb authored over 10 years ago by Uwe Schmitt <[email protected]>
ba2264581b29ff191a57d7249ba6b4febb80d1e6 authored over 10 years ago by Uwe Schmitt <[email protected]>
Resolved Conflicts:
src/tests/topp/CMakeLists.txt
[FEATURE] ib spectra format export
b48250afc490a20183a9cf7aecb2480ac87e71b1 authored over 10 years ago by Stephan Aiche <[email protected]>[FIX] fix how swath files are annotated
95ff308b880dc4dffd52384c67dac2d593c9f84d authored over 10 years ago by Hannes Roest <[email protected]>
building files for distribution + building extension "in place"
in one step. this is fas...
Fix coverity errors
3b30eeb5dd410e673d48d36132d82f0c8d6cea26 authored over 10 years ago by Hannes Roest <[email protected]>
- fix broken mapping between swath file vector and swath annotation file
(no MS1 map annotatio...
moved codegeneration and moving of files needed for
pyopenms distribution to new file cr...
87be6feecd567e9a298a765ae5c599b3078dab0e authored over 10 years ago by Stephan Aiche <[email protected]>
boost::random::uniform_int_distribution -> boost::uniform_int
boost::random::random::mt19937_64 ...
61623f177bb1d3df6d3485cb9f3c8ac022f8d90a authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
f908c7a56da787652893eae34ef236e639ae6f7d authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
05b445498568f56ea259fb49667546435634bd9b authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
f89ecf9987441c989ded25e3d9e9d182b2831811 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
008c54a9cbe5612bfb93e41533200cb8998fa47b authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
* the test should fail if the tools were not properly registered in ToolHandler
bc20ad5f6830e1c8b468338523c2d427cc170e07 authored over 10 years ago by Stephan Aiche <[email protected]>82847fb9bf1e2e5d498d388c4e27aec2c37382e6 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
7ca061b9376dd9747926f0f6c4af73d2fc7ac8aa authored over 10 years ago by Stephan Aiche <[email protected]>
7e9341d96fae64f756c9ffc9a3f56a394275f633 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
210ad5fffe2e49900aac14ce17b843e2a9cd2b73 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
c80b6448075eefe7c6830b393b685bbb33ec06ed authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
e45c6b60ca26a21c11585db8e8061c22c1015bcf authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
240866ef742dbceedebe4247c4056d2704f5efe9 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
de99208e6d7bff78b7b2ee2637cdc796a4e2957e authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
dd5448d5ea9aa18bbf1d3d3f90adf147707a613f authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
271a5adbffd729ccf6ce3b567a643ae93179c4a5 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
changed PeackWidthEstimator spline
changed linear-fit
changed gsl_multifit_linear
changed quadra...
a1b6dabec7cbd45a0575b28ea0f7a3f59666e069 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
66fb11aa009861fa818962fb880fcce8839c4ab4 authored over 10 years ago by Stephan Aiche <[email protected]>
removed gsl_linalg_LU_decomp & _LU_solve
removed gsl_lanalg_SV_devomp with Eigen SVD
removed gsl...
wrapped all function and replace function calles with wrapper functions
consistent namespace
...
0378bc6781ed848df852dc3c32cce92fcb59ac07 authored over 10 years ago by Stephan Aiche <[email protected]>
removed gsl_pow.h
-replaced gsl power function with the std power function
moved gsl-wrapper fi...
f725b556813180824599cde27e24ac6bc8cb6065 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
* eigen3 is header only so no integration into target_link_libraries required
da44a83fb6f9261c2e82d4bd218c7986626c5f95 authored over 10 years ago by Stephan Aiche <[email protected]>018453eca3e3e9a2606cf5615626464d82da1ba3 authored over 10 years ago by Stephan Aiche <[email protected]>
784d71f21ac04f6f4999efa9d2e31a280a0a3757 authored over 10 years ago by Stephan Aiche <[email protected]>
* should allow direct merge on github
* Merge branch 'develop' into feature/ib-spectra-format-...
1eb77786e6de9ebaeb003afd485eee5f823904b1 authored over 10 years ago by Stephan Aiche <[email protected]>
[NOP] added support for travis-ci to OpenMS
71eeff0c70890e25bcd9e5576956b54839d6bf0f authored over 10 years ago by Stephan Aiche <[email protected]>21c1e9b793be49c3cb122e611d32630818c8f76f authored over 10 years ago by Stephan Aiche <[email protected]>
[BUILD] improved handling of boost in OpenMS build system
94b0e3c91d3dbad624c331a502f4a2570e5f6c16 authored over 10 years ago by Stephan Aiche <[email protected]>[FIX] fixed AccurateMassSearch_test
90c5180f68f7cacba560e8f7d1f721b9cec1dced authored over 10 years ago by Stephan Aiche <[email protected]>e3c2ca5989765cc57fa1c39efae20e1a6b246f80 authored over 10 years ago by Timo Sachsenberg <[email protected]>
51ae27da67662540d50765716c9b0e1308ab0f3c authored over 10 years ago by Stephan Aiche <[email protected]>
* fixed boost compiler errors from boost1.54
* added proper dependency for MRMTransitionGrou...
* for now we ignore AccurateMassSearch_test and GzipIfstream_test
24ec553065dfab2bab17f322cc6312281214717d authored over 10 years ago by Stephan Aiche <[email protected]>d3433dc62b92d459c62fe62bec4c388db4aaa8fe authored over 10 years ago by Mathias Walzer <[email protected]>
d6ad59fb891226052d675036da07bcc1df5aac97 authored over 10 years ago by Stephan Aiche <[email protected]>
* added conversion code to FileConverter
* added corresponding topp tests
* fixed minor issue...
* IBSpectraFile can directly convert cXML to ibspectra format supported by isobar
* includes t...
304235fa9081a6b2ee7d4b6368434a1b2102b1e0 authored over 10 years ago by Hannes Roest <[email protected]>
- add test cases
- fixes coverity bugs 1079407, 1079409, 1079410, 1079411
- fix copy paste error
- add testcase
1746f2aed2f47999bb7015354972b17c632a1f24 authored over 10 years ago by Hannes Roest <[email protected]>
coverity 1079515 Resource leak
coverity 1079514 Resource leak
a2567cda27576ebf006707823c63e66856deaa85 authored over 10 years ago by Hannes Roest <[email protected]>
[BUILD,TEST] build system fixes / cleanups
af05c7206f8ee2f037cb923b033336eb0b7c087b authored over 10 years ago by Stephan Aiche <[email protected]>* addendum to 7a3fc78aa507abe294850fba42719423f81c0d5c
5150e953b002fcf1797f26906b849ba8c07693a4 authored over 10 years ago by Stephan Aiche <[email protected]>96322916e4f48c5ac42601a0d4be9a417427e44d authored over 10 years ago by Stephan Aiche <[email protected]>
5700325e02048863a7ee1ec6e180503853252b11 authored over 10 years ago by Stephan Aiche <[email protected]>
00cc0b89f1c096432c4f13b43da68ee229a6e304 authored over 10 years ago by Stephan Aiche <[email protected]>
* see #648
e24db976030cbde7848671802742f8208f56b4a0 authored over 10 years ago by Stephan Aiche <[email protected]>743ed85be1c36f85d54593df6f860c0f9e2824dc authored over 10 years ago by Stephan Aiche <[email protected]>
84bc2936291958e3d7c98a3c7aac3f2e70a52cda authored over 10 years ago by Stephan Aiche <[email protected]>
22f0156cc7de1c3a4feb9b1031c66a55187992d3 authored over 10 years ago by Stephan Aiche <[email protected]>
[NOP] replaced c like file ending C with cpp
3ca33daee74a669b6c719192265b8152177677e0 authored over 10 years ago by Hannes Roest <[email protected]>9bc8d670e939bc5dc77c34ba09eccb62054aad6d authored over 10 years ago by Stephan Aiche <[email protected]>
f73f53329579ec997cf4561036419c789a07f69b authored over 10 years ago by Stephan Aiche <[email protected]>
[BUILD,PYOPENMS] simplify pyOpenMS build system
8b3e6709317102e7d3fe14aa8ae6ce6a72c2f9b3 authored over 10 years ago by Hannes Roest <[email protected]>
- do not copy all files separately into build folder
- add gitignore statement
- add debug Pytho...
CMake and docu cleanups w.r.t. to the new layout
36feabdbcec6dce4ef49ead14101e656b551631e authored over 10 years ago by Hannes Roest <[email protected]>* incl. further cleanups related to the repo restructuring
cc3d07d8f2c54c31571f97670550bebc0bc20ec7 authored over 10 years ago by Stephan Aiche <[email protected]>
* removing the test_build related infos from the targets target
* updated the pyOpenMS cmake t...
[FIX] fix Cython 0.20 compatibility issue
aba32a089783618815e8c7f726f2ac26b31dbd90 authored over 10 years ago by Stephan Aiche <[email protected]>
- This patch makes the code work also for Cython 0.20
- Cython 0.20 seems to be pickier with emp...
Repository layout restructuring
7f053021bfde4af4f552d08d7519bcb03b838312 authored over 10 years ago by Hannes Roest <[email protected]>6c53e278922960525c00439358cac5af45218150 authored over 10 years ago by Stephan Aiche <[email protected]>