Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
Fix for pepXML loading bug (#710)
d2fe883de745eaac5547070a9b13d899baf7ae11 authored over 10 years ago by Hannes Roest <[email protected]>
* removed doc from ALL
* added installation check (incl. a more helpful error message) to chec...
984f104d9547b983aa241cdadbca8e23f468a3f0 authored over 10 years ago by Uwe Schmitt <[email protected]>
2c7963861b3b75ef1ff289056cf2e49b79494b8e authored over 10 years ago by Hendrik Weisser <[email protected]>
10eba5194ef323f6090a2f56e46fa1f8ca1f4090 authored over 10 years ago by Hendrik Weisser <[email protected]>
When working on pyopenms existing shared libraries in pyOpenMS/build
might be out of dat...
6eb9f4f5831762a48f6800d9baff8f332899f695 authored over 10 years ago by Uwe Schmitt <[email protected]>
+ the name now combines open-ms version + timestamp of built
of pyopenms.
(this ...
85605ebce799855dac9f279728af396ba7b20f64 authored over 10 years ago by lars20070 <[email protected]>
27253e4cff89121a9085bc92195403cb2f411e94 authored over 10 years ago by Mathias Walzer <[email protected]>
e9902378178e482136c2c47110616975ed76355b authored over 10 years ago by Hendrik Weisser <[email protected]>
054fe734d932eb22bc2b2ba5754e66f03fb7dbf5 authored over 10 years ago by Hendrik Weisser <[email protected]>
2bbde09b3d0f931177f63c4b5064063d0b9861b9 authored over 10 years ago by Hendrik Weisser <[email protected]>
* moved general package defs to separate file
1476b609482502c3bfa415e04aa46acef7b43dfe authored over 10 years ago by Stephan Aiche <[email protected]>* some general documentation improvements (e.g., replaced svn with git on the touched pages)
90a6a558a9f13516fa4b6ae80a3ec3b7552d6600 authored over 10 years ago by Stephan Aiche <[email protected]>4d9d26fff8f96ff6daa38990cd0778d90fbe8151 authored over 10 years ago by Stephan Aiche <[email protected]>
fc2b8e92c2ae6ef0d407be24cd8ab90be4aaab4e authored over 10 years ago by Stephan Aiche <[email protected]>
* note that this doesn't necessarily allows compiling against the installed
headers, since t...
* since doc is now part of ALL and doc needs a GUI we need travis to run with an X Server (xvfb)
4e33621005e04c456fe225e880b49a76c7ba2873 authored over 10 years ago by Stephan Aiche <[email protected]>1f41e2e6e736b5375f57a76f64038ecd17dda39f authored over 10 years ago by Hannes Roest <[email protected]>
* doc is now part of ALL to ensure that the documentation is ready when it is installed
42f7532027904a345d301b18ba8ee7b0a6ca82cc authored over 10 years ago by Stephan Aiche <[email protected]>* Note: Installation is completely disabled for now
090235a9c139b0cf5b0631453419f30fd26e445f authored over 10 years ago by Stephan Aiche <[email protected]>279cf12b6c232829af1dc4bb32e7de04b131a23e authored over 10 years ago by Hannes Roest <[email protected]>
b0138310adb219fc0ffce45bd8da4a18dca49207 authored over 10 years ago by Hannes Roest <[email protected]>
6052a669807a93ee65dfe616f690c875d0207619 authored over 10 years ago by Hannes Roest <[email protected]>
be552f02bd3f68e52a90a559519cb887d1ba91ec authored over 10 years ago by Hannes Roest <[email protected]>
- possible to turn on/off the use of Chauvenets criterion
cddaa291bc339c39e9ec92787b1a8d4527ab38b8 authored over 10 years ago by Hannes Roest <[email protected]>Fix/misc
0d9c77a1a14ef6c693a49b70004bb1db4c35d396 authored over 10 years ago by Hannes Roest <[email protected]>132a2bb2cbda228deecff0d1fedf3dbad56be0f0 authored over 10 years ago by Stephan Aiche <[email protected]>
f8bc72f42ee9aab0d54e0ddd4b6b52800081c089 authored over 10 years ago by Stephan Aiche <[email protected]>
35007633828a714ffbeff75f878c33ec9084d8e3 authored over 10 years ago by Hannes Roest <[email protected]>
- option to sort by window before annotation (opt-in)
9be4796143bf539d8c7f3f64570125c46f744901 authored over 10 years ago by Hannes Roest <[email protected]>5d0e735d674c857bfce0df22d6077aec853d5f18 authored over 10 years ago by Hannes Roest <[email protected]>
* the header is only included by File.cpp to avoid unnecessary access
* added some more commen...
[FEATURE,FIX] Added min/max values to go-to dialog
d8c0222c03471637adafe37bf828df333f915c7a authored over 10 years ago by Stephan Aiche <[email protected]>6d9ca6d4efd25c81494ece91fd456fdb38ae31dc authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
887fc5bfb23ab45a5f5f3d4647a9c1d643ad6a1e authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
8aff026cdfc473e010e09ecdf7a78c74b7eb508d authored over 10 years ago by Stephan Aiche <[email protected]>
- use OpenMSBuildSystem_externalLibs.cmake on top level to find correct
include paths not only...
[FIX] Propagate metadata in OpenSwathWorkflow
bd7fe72d2618f5ec310a6ff77e5dbf7aad2588b8 authored over 10 years ago by Hannes Roest <[email protected]>465b61eb89370c1bb5c033c5452deca4e5549e94 authored over 10 years ago by Mathias Walzer <[email protected]>
0503bba8c0c0405be557165e649585f0fd1f8167 authored over 10 years ago by Mathias Walzer <[email protected]>
f01eaf44f763eb0d9e6c993cc42ab8666a069c34 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
074b28f5732fef776333c1f366e3a5d7f42feeb1 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
a7996262d6d3bc9ee9a2a48c9565596dba884eac authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
ea6f4862f27e02f4da56bd4b57edfdd8996b4bd6 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
9a5f675eae713a816c82e47940a53bf4bcad3a49 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
6b2a37fa83a16de20508297c209c6cd3fc145e12 authored over 10 years ago by Hans-Christian Ehrlich <[email protected]>
8aa1140d86a062af61b67de69efc7223a731e29e authored over 10 years ago by Mathias Walzer <[email protected]>
ac53ec4eed96f7cb1e9716707d9caf4c3fe6677c authored over 10 years ago by Hannes Roest <[email protected]>
d773abec211cd851f273cc2c2627f8b0d0000ecc authored over 10 years ago by Hannes Roest <[email protected]>
- correctly handle meta data and propagate from spectra to chromatogram
file
- add test for pr...
be1d70da3645711f8d69147386dbdf7b0f334e57 authored over 10 years ago by Hannes Roest <[email protected]>
- parse modifications in TPP format:
- allow parsing of modified peptides in TPP/SpectraST form...
c17753532b22139cb9500f8c2f0e40ab306978d3 authored over 10 years ago by Hannes Roest <[email protected]>
- correctly handle update of shared variable
- move PeakType out of loops
229fc43a428ffd5f1d66a757cc6ff8d4bb20ea32 authored over 10 years ago by Hannes Roest <[email protected]>
ef29811c6109297985f27a7b4834d4675b16fdf2 authored over 10 years ago by Hannes Roest <[email protected]>
6d6b74424720804d2779138e6ec749c75f9803e4 authored over 10 years ago by Hannes Roest <[email protected]>
- while reading, the spectra are decoded in parallel which allows for
faster read times of the...
- while reading, the spectra are decoded in parallel which allows for
faster read times of the...
- extend PeakFileOptions by an maximal_data_pool_size_ parameter which
specifies how many spec...
- replace sizeof(streampos) with sizeof(streamsize) since only the
latter is guaranteed to be ...
[FIX] fix RAM usage when adding dataprocessing to chromatograms
29f19f57d4cad31566df9ed801ba0fc26d0d6674 authored over 10 years ago by Hannes Roest <[email protected]>[FIX,TEST] fixed OpenSwathDecoyGenerator / MRMDecoy
74a8b78b54a36d18be3825964278919236554b71 authored over 10 years ago by Hannes Roest <[email protected]>[FIX] disable OpenMP again for ILPDCWrapper (see also #595)
54d90bdef0a679802fd11842623eea5b96116156 authored over 10 years ago by Stephan Aiche <[email protected]>[FIX] proper usage of map in ControlledVocabulary
adfc4f044d60913c78883f330e3088f834be91cc authored over 10 years ago by Stephan Aiche <[email protected]>470ef2502dbe2275eca752742d629ee2fc5e896b authored over 10 years ago by Timo Sachsenberg <[email protected]>
- instead of copying all chromatograms, add the dataprocessing directly
to each chromatogram
f9ec491cd49ab1eb657406648a8766442791a862 authored over 10 years ago by George Rosenberger <[email protected]>
[FIX,TEST] fixed MRMDecoy_test
[FIX,TEST] fixed OpenSwathDecoyGenerator tests
fce18bbd6a96f6b1b090aca789f470c64e791108 authored over 10 years ago by George Rosenberger <[email protected]>3bccfe721b1bd037587c59eb47da3f5b70b04320 authored over 10 years ago by Hendrik Weisser <[email protected]>
added missing index file for OMSSA test, which gets recreated when runni...
68b63dd2bbf51f7ccc988c7b9f5506784730629a authored over 10 years ago by cbielow <[email protected]>Major speedup of String --> Double conversion
4cdb7aff37da9b664c3131bca263636eee0ea23f authored over 10 years ago by cbielow <[email protected]>ec6dcac6af1cba796637cc2e6d5fcc901d09d30e authored over 10 years ago by Hannes Roest <[email protected]>
- cacher would not properly remove tag from chromatograms after
converting back from cached st...
b417e58a921ef4d38d19ce11fefd24ded947a447 authored over 10 years ago by Hannes Roest <[email protected]>
1c16cd568ead9f07398fcd2f1e263c5557b12ef1 authored over 10 years ago by Hannes Roest <[email protected]>
45b5cdead5624a96414cf8facc82281b17576b75 authored over 10 years ago by Hannes Roest <[email protected]>
49c8ec216c95e93bad349a05f07e61dc9a1d994f authored over 10 years ago by Hannes Roest <[email protected]>
- fix equality operator (make sure that we compare the actual contents)
- this can still segfaul...
- instead of storing a full DataProcessing object for each
spectrum/chromatogram, only store a s...
5bc0fd94ceabc720b996058dace5ff3659c5b658 authored over 10 years ago by Stephan Aiche <[email protected]>
- new method "getValue" to evaluate the model at a point
- more robust estimation of initial par...
47750e62d4d62409f304ed4459af12f308ebafa0 authored over 10 years ago by Hendrik Weisser <[email protected]>
6a15db7f3d30fde195876018a3dbf2cf1cc2b9b4 authored over 10 years ago by unknown <[email protected]>
cf479cddafdaafaf5dcedd371dda147bd647d530 authored over 10 years ago by unknown <[email protected]>
Checker/Test fixes and adds test for CTD writing
95709ffce78879eb18286d07608708d6555ee65d authored over 10 years ago by Stephan Aiche <[email protected]>318efd15e8eca07c3e71e7b8acc32fcf4bf64582 authored over 10 years ago by Chris Bielow <[email protected]>
[FIX] fixed missing std:: for vector
cecb4a02254bf3d27cfc009607d377b64c98f1d5 authored over 10 years ago by cbielow <[email protected]>* also applied uncrustify
d53eac45ba2f640573a36459efa606239216c7ab authored over 10 years ago by Stephan Aiche <[email protected]>722ec4deb62aa8cd3ad84810ad122588ce0f1e42 authored over 10 years ago by Chris Bielow <[email protected]>
further improvements to MGF::load()
349ec48d88083f83d2121f29c116a0be318b78a0 authored over 10 years ago by cbielow <[email protected]>afede0990ea77ca190877e068cb0b30ecb3f689c authored over 10 years ago by Chris Bielow <[email protected]>
Fix/file size limit
eaff9322f778b85c5ec33498cabd77a18c4b225e authored over 10 years ago by Hannes Roest <[email protected]>ac1fac4463dd925d7e77ff2cc3ecc5a7f20ca8df authored over 10 years ago by Hannes Roest <[email protected]>
[FIX] Bugfix for threading issue in MascotGenericFile
877a27eb53dc7374029ab200644dc96ba2f1205d authored over 10 years ago by Hannes Roest <[email protected]>
- it was re-enabled in 0ce469d0ee54f70ee5848639f02537e5451ad44a however
the underlying issue s...
7351c7de9772eea990ab1c69f024dde4e8b771da authored over 10 years ago by Hannes Roest <[email protected]>
34ad7814e3476869534a5fd0bb2ca9630f1a8db5 authored over 10 years ago by Hannes Roest <[email protected]>
32e2760df75858fcf20cc7348d30b8cc6c07197a authored over 10 years ago by Hannes Roest <[email protected]>