Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
06133849299d348676cd9399e98fd23b228025cc authored over 10 years ago by Hannes Roest <[email protected]>
5afaac54ae98f2bf3b00f1f9800b37f2669d9a07 authored over 10 years ago by Hannes Roest <[email protected]>
1b2074fde6a0e22c43006a15caf84c5158efe4cf authored over 10 years ago by Stephan Aiche <[email protected]>
* -Wdocumentation-unknown-command
* -Wdocumentation
15fe2327e8c744a5700f191a9947db566b0d3250 authored over 10 years ago by Stephan Aiche <[email protected]>
1d970b111902fe5325b34dfa116dbb928236a6c7 authored over 10 years ago by Stephan Aiche <[email protected]>
c5022bb17d943c71661c301bd1db8e087918ec7b authored over 10 years ago by Chris Bielow <[email protected]>
17d585dc5b57d259108ad1fc94b38a83eefb825f authored over 10 years ago by Chris Bielow <[email protected]>
* we now distinguish between internal and SYSTEM includes and instruct the compiler to ignore s...
a04e806f8a214b62ebb12a9bb29a47fee0a61dad authored over 10 years ago by Stephan Aiche <[email protected]>079beddfda3bc5ce34d3dcd7428563891135be44 authored over 10 years ago by Stephan Aiche <[email protected]>
31e9189e7a45dbddcf13998a852bc3076178218b authored over 10 years ago by Chris Bielow <[email protected]>
[INTERNAL] cleanup of iostream includes
a4e0f520c930a5f93a02ffa3f3b60e4ca2c643bd authored over 10 years ago by Hannes Roest <[email protected]>9b6cf20aaceaf361751fa20e06a8886802aac917 authored over 10 years ago by Chris Bielow <[email protected]>
fix several issues reported by coverity
aad59111152461edb220296f4c7993aca788ec44 authored over 10 years ago by Stephan Aiche <[email protected]>4831027ddca2de262369541491781dbc92b69abd authored over 10 years ago by Hannes Roest <[email protected]>
- get final changes from c8ca7c1 in main branch
ec353b606df54ed3d9c520fed5d5bde603701a22 authored over 10 years ago by Hannes Roest <[email protected]>fix Coverity
- introduced in 2011-03-13 18:48:23
112221ce92c18b8dc2b1cfbc0832b645ba0652b9
fi...
96ee74906181f13064e4fa09c47bd105295148ee authored over 10 years ago by Hannes Roest <[email protected]>
Conflicts:
src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h
Coverity fix
fixes 1182336 Uninitialized scalar variable
Coverity fix
fixes 1182337 Uninitialized scalar variable
Coverity fix
fixes 1182544 Non-virtual destructor
- introduced in 2009-10-07 04:11:05
7dc2749...
- match new[] with delete[] (see inside LibSVMEncoder.cpp for the new[])
- introduced in 2006-0...
3c0e4a48a391d76a085bcdb1ad6a499eac5b2485 authored over 10 years ago by Hannes Roest <[email protected]>
Coverity fix
fixes 1182546 Use after free
- introduced in 2009-08-26 15:44:26
2d77b9b5e5afdeb...
2c55bb610038e63d6fb92694a86d6f1aa92c9898 authored over 10 years ago by Hannes Roest <[email protected]>
Coverity fix
fixes 1185792 Resource leak
- introduced in 2013-10-19 14:49:51
cfdadd4ad8795200...
26a4af0c5ee9cdf06f3dea8d428111aeaac976cb authored over 10 years ago by Hannes Roest <[email protected]>
Fix/misc
be982e276f93d66cff27e4e85277a6550e806ce5 authored over 10 years ago by Hannes Roest <[email protected]>2590d44432a8a76f79e48ac0ced1861efb374c78 authored over 10 years ago by Chris Bielow <[email protected]>
e2be0dae3d4316afec30efea72cf456bb08f252e authored over 10 years ago by Stephan Aiche <[email protected]>
- make OpenMP variable signed
1e38dfa0528d09583943d336de0fea826f2b3dc6 authored over 10 years ago by Hannes Roest <[email protected]>44d325559229a944981d930005774c7e55ec7845 authored over 10 years ago by Hannes Roest <[email protected]>
648a895c1a35be6a0df745f7c4c51519f82ffac6 authored over 10 years ago by Hannes Roest <[email protected]>
- add docu to structures introduced in pull #702
02b159d0397a1a2a48973ac0583eff559128d811 authored over 10 years ago by Hannes Roest <[email protected]>9d30ef441e52ffdd754c260547862eaeccc1da35 authored over 10 years ago by Uwe Schmitt <[email protected]>
f6138c657ee45343abe30b8364fd968e91c2a554 authored over 10 years ago by Uwe Schmitt <[email protected]>
includes Python implementation of IMSDataConsumer interface
Conflicts:
pyOpenMS/setup.py
971d1bca1e464c8d67dd8cfb5f645ed27a750c0e authored over 10 years ago by Uwe Schmitt <[email protected]>78013bbeaf9361d24f88c9e433903361fd04be27 authored over 10 years ago by Stephan Aiche <[email protected]>
c8ca7c1d9f09acff6723c18914be438db74af913 authored over 10 years ago by Hannes Roest <[email protected]>
e1c54dd13ff3c398336206134951b088f558d123 authored over 10 years ago by Hannes Roest <[email protected]>
25e13bfe669168f4643e9abfdcff331be4d5e524 authored over 10 years ago by Hannes Roest <[email protected]>
cf8d1ed6acda64db7b0e2364a29863eaa3232a25 authored over 10 years ago by Hannes Roest <[email protected]>
164db6a796cac4a8e2c343048dda3cf24856de30 authored over 10 years ago by Stephan Aiche <[email protected]>
Conflicts:
src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h
* avoids global inclusion of iostream
05a98fecb5bcc2e606a631b730b2abc7576f5d64 authored over 10 years ago by Stephan Aiche <[email protected]>87d792bd9b50088681dc9fffa1b0dcdd2607edf7 authored over 10 years ago by Stephan Aiche <[email protected]>
be49852f13cca9dc890af7093c419bbbb3b71730 authored over 10 years ago by Stephan Aiche <[email protected]>
* removed Param::checkDefaults() ostream argument and replaced it with a internal LOG_WARN
6dc5eac44acf060ad94c8491d180400227d49f2b authored over 10 years ago by Stephan Aiche <[email protected]>* this avoids the permanent inclusion of iostream via Types.h
77867e326ba8aa0f88a870390db546f71981ab3e authored over 10 years ago by Stephan Aiche <[email protected]>6ca186e7b43d103a9a87ec0e6259478fc0b1805d authored over 10 years ago by Stephan Aiche <[email protected]>
e7d74413f85bc7e28575e245639ea437a5cf7224 authored over 10 years ago by Stephan Aiche <[email protected]>
abddf52fa3deeb3b8b407dd74501e783d2c7b4be authored over 10 years ago by Stephan Aiche <[email protected]>
- upper window is more reliable since it will also work with broken
SWATH files (e.g. files ge...
Resolved Conflicts in:
tools/lnx-cibuild.sh
[CI,FIX] fix travis contrib clone problems
261255cf4362ff189a134c8c199fb31e38c2beb4 authored over 10 years ago by Hannes Roest <[email protected]>e34126e5d1b45b9da89910244aaf95a7693329dd authored over 10 years ago by Stephan Aiche <[email protected]>
* introduces the ENABLE_TUTORIALS variable in the mac package build
a6d7ced6ff5723e832d1d80a968a2df29ec4bd34 authored over 10 years ago by Stephan Aiche <[email protected]>32f9981ae9d236ac6b338d7b4e222183892492e1 authored over 10 years ago by Stephan Aiche <[email protected]>
5d35dae1bd7ee4939ba750226cf89fcd303736ec authored over 10 years ago by Stephan Aiche <[email protected]>
Feature/parallel reader
f381706585ada5e3818df79175a30c7e251e1759 authored over 10 years ago by Hannes Roest <[email protected]>Feature/pyopenms wrapping improvements neu
bd9c9bb03e8a1a9a3532df57fbf55b7fabd3898d authored over 10 years ago by Hannes Roest <[email protected]>
- use const DataProcessing object when operating on a cons
Spectrum/Chromatogram
9c78c99cb5d974155c3a892e4e1665e9fb4d88fc authored over 10 years ago by Hannes Roest <[email protected]>
fixed 32bit memory limitation of OMSSA by chunking input data
ca79a5b8d3d29f65c55a3f3881707214273bba2b authored over 10 years ago by Hannes Roest <[email protected]>[FIX] fixed misleading warning ('Removed x peptide identifications...
a8e0aef519ed23a8f8afe7a9cbc99deab647d353 authored over 10 years ago by Hannes Roest <[email protected]>43355682d1c3bb7efbe0ab99d647f44dd5d25bed authored over 10 years ago by Stephan Aiche <[email protected]>
91b12dbf55ee7542b6e0f10e281c7a74f0d0cef0 authored over 10 years ago by Stephan Aiche <[email protected]>
ea747cab32134726868fd78ca63fa0a0a80658a6 authored over 10 years ago by Stephan Aiche <[email protected]>
9632fc4f066f3ebb8c7bcbdabbacd299a449b52a authored over 10 years ago by Stephan Aiche <[email protected]>
7759709d45117e3c4d6df38361bc3b6edb8192d4 authored over 10 years ago by Stephan Aiche <[email protected]>
- do not call populate in the destructor since this function might throw
373775cdc9aefc760c76932e694de9a17772d458 authored over 10 years ago by Hannes Roest <[email protected]>1ed8a51057123a92d3073fda3cdc5c65a255fc2d authored over 10 years ago by Chris Bielow <[email protected]>
35017d099d4f8717ad791ea0507ab884ebb3662f authored over 10 years ago by Chris Bielow <[email protected]>
8e20ca05f67e09cd5f69a948e781ba688878e91e authored over 10 years ago by Chris Bielow <[email protected]>
1e532159ad27d2651d2e9bfe89de80c5ecc5eee3 authored over 10 years ago by Hendrik Weisser <[email protected]>
d3286698a8ff1ddb4c3bad1f8525e7f2ebd9d722 authored over 10 years ago by Chris Bielow <[email protected]>
7b04473c27102bc7b6d9a3f3e4712b059090142b authored over 10 years ago by Hannes Roest <[email protected]>
Feature/aa sequence tpp
b02cf4e0c67befc601b67ace080c19c17f915830 authored over 10 years ago by Hannes Roest <[email protected]>489ef016cec3e41f05ae28d7ed9f3cbe2b31847c authored over 10 years ago by Hannes Roest <[email protected]>
[API,FEATURE,INTERNAL,TEST] updates to FeatureFinderIdentification and the TraceFitter classes
73ecc3b846356020b250e95615623e5ba41f32f8 authored over 10 years ago by Stephan Aiche <[email protected]>fd9c99bf8a6679795a03eb9e75b10e9791eb1a8b authored over 10 years ago by Hendrik Weisser <[email protected]>
Improved intensity profile computation
9f7eb5ccd1a87aa5332bf1f722b12d3128b1150c authored over 10 years ago by hendrikweisser <[email protected]>[BUILD] fix build system bug related to contrib finding.
e7649835f539c14d56c077fce3ab8bf8156bd251 authored over 10 years ago by Stephan Aiche <[email protected]>[NOP,TEST] clean up MRMDecoy, add more tests
bab46f34fd81428080cef903b66e47fad8544123 authored over 10 years ago by Hannes Roest <[email protected]>33238695e8f5425c0582e9bc0568b258f020564d authored over 10 years ago by Hannes Roest <[email protected]>
[FEATURE] variable stylesheet support for qcml
62bebc0cac069fcfcb603060b753fe993a7dcc2f authored over 10 years ago by Hannes Roest <[email protected]>[PYOPENMS] setup.py as minimal as possible + other improvements
e4439295268bacf4943903bf1f645587475c231d authored over 10 years ago by Stephan Aiche <[email protected]>a4acda8e008850a4801a715279d5b19b25e08adb authored over 10 years ago by Stephan Aiche <[email protected]>
* moved some code from header to source files
* is faster then the previous map implementation...
pyopenms.Chromatogram -> pyopenms.Interfaces.Chromatogram
pyopenms.Spectrum ->...
2bf435418e389d5daac3f7f74ad3c227e5550267 authored over 10 years ago by Uwe Schmitt <[email protected]>
added base class DefaultParamHandler and its methods
eb0c14ab971f427619f746795abf8bb972857c0b authored over 10 years ago by Uwe Schmitt <[email protected]>5bdb5e9f65db606b83321002a716b6c3c2e4def4 authored over 10 years ago by Uwe Schmitt <[email protected]>
131c02cbabd9dfa38a7da65ea501de5668ef1191 authored over 10 years ago by Uwe Schmitt <[email protected]>
Python class Param now has additional method get() which works
in the same way as get() ...
in case of invalid value type, conversion to Python raises internal
exception. replaced ...
if a C++ method is not declared with "except +" and throws an
exception the Python inter...
cfd146afa9c1db664df75124aea5538b9a8e534b authored over 10 years ago by Uwe Schmitt <[email protected]>
moved ResidueType.AIon -> Residue.ResidueType.AIon
same for all other members of enum ...
8fdd2538ab39bb66beef9beb7f64aa7ae270ebcd authored over 10 years ago by Uwe Schmitt <[email protected]>
a3b20784665047a3db684a9915953d397ee15ea3 authored over 10 years ago by Hendrik Weisser <[email protected]>