Ecosyste.ms: OpenCollective
An open API service for software projects hosted on Open Collective.
github.com/OpenMS/OpenMS
The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS
[FEATURE] removed database support
cf6a7a9162b3b0e52cc4973ca8030c6717b748ee authored over 10 years ago by Stephan Aiche <[email protected]>ba000c9e6529c9176b1fdacf32f8008dcc2262d2 authored over 10 years ago by Chris Bielow <[email protected]>
e7c7e007157dc1fc2b9148f66eefbc196bbf041b authored over 10 years ago by Chris Bielow <[email protected]>
[FIX] fix for IDPosteriorErrorProbability on Mascot search results (#740)
367c203e169666ea37d852d86ddbb3f904394b68 authored over 10 years ago by Stephan Aiche <[email protected]>Need the fix of the "prob_correct" option in IDPosteriorErrorProbability.
7a8f8b78985af766c05d237d830d9e8bc0aa1a1c authored over 10 years ago by Hendrik Weisser <[email protected]>Work in progress.
520def7ee03dd3664d0266512de6fad6e70d691c authored over 10 years ago by Hendrik Weisser <[email protected]>40ceb4be115ec4967bc68be87012479e2a6f0923 authored over 10 years ago by Chris Bielow <[email protected]>
07e5d84e3672726a6adb49853883810539ac1449 authored over 10 years ago by Chris Bielow <[email protected]>
d807e3fb3c445643c7c6a89698372e1409f3bfea authored over 10 years ago by Chris Bielow <[email protected]>
Conflicts:
src/openms/source/METADATA/PeptideIdentification.cpp
src/tests/class_tests/openms/s...
Conflicts:
src/openms/source/METADATA/PeptideIdentification.cpp
src/tests/class_tests/openms/s...
small fix to Win install doc for VS2013
5c1276c9e5f21dd328a8193dfb3960461866fae3 authored over 10 years ago by Hannes Roest <[email protected]>
Conflicts:
src/openms/source/METADATA/PeptideIdentification.cpp
8b454be6b16074a66c36a3e1b474a1bee30b69f2 authored over 10 years ago by Chris Bielow <[email protected]>
3ae27df09751e44f450408fb20a8daec364dc11c authored over 10 years ago by Chris Bielow <[email protected]>
92a952e93602f3319053ba9a276a228df84fdf97 authored over 10 years ago by Chris Bielow <[email protected]>
c25c4f36f63ba9ed29461e0703988b899e5da010 authored over 10 years ago by Chris Bielow <[email protected]>
- it is now longer necessary to know the number of spectra and
chromatograms beforehand
b14cef596856b4ec57fb3cb8c626d032d60f89a9 authored over 10 years ago by Hannes Roest <[email protected]>
- write spectra and chromatogram number at the end of the file
- allows to start writing spectra...
4a7be7184643a8df3f5073f4eb22d58bdd216bee authored over 10 years ago by Chris Bielow <[email protected]>
Also made cosmetic changes in PeptideIndexer documentation/log output and added a test for the p...
cf917ad95c414fd5e93af816a3a69f7b5a5f91a8 authored over 10 years ago by Hendrik Weisser <[email protected]>73b06f6b44266eaabd63387bdf1b83e0493de731 authored over 10 years ago by Fabian Aicheler <[email protected]>
17fc1d5a800380c049cb75a0f6ddfc8d524b990a authored over 10 years ago by Fabian Aicheler <[email protected]>
05e93b82cb676b3bdb91a82e177a560ece7f2e44 authored over 10 years ago by Fabian Aicheler <[email protected]>
f2ac37c56ebdecca6871c1d5cc21762a7d730f40 authored over 10 years ago by Fabian Aicheler <[email protected]>
087ff01b7379bc8a697207626b544d67bcb24466 authored over 10 years ago by Fabian Aicheler <[email protected]>
cb06428f896523edb450c8738b3e6fea937a3189 authored over 10 years ago by Fabian Aicheler <[email protected]>
451d12021ed3f35a9a53cb619421a60a93aa5a74 authored over 10 years ago by Fabian Aicheler <[email protected]>
b57ba46b796069ceb0473e9fcc0cde60b5aaa7a0 authored over 10 years ago by Fabian Aicheler <[email protected]>
33064b074fba94ffbc899f7f95d490c30a1bfc52 authored over 10 years ago by Stephan Aiche <[email protected]>
0205736a15273e06a1e50009beb2fca988bd1757 authored over 10 years ago by Stephan Aiche <[email protected]>
87b6ca839370f049f7fca76351308fb4024a746c authored over 10 years ago by Hendrik Weisser <[email protected]>
386efe4931c6e49e665e7254ef0cd495456be5c0 authored over 10 years ago by Hendrik Weisser <[email protected]>
fix speedcheck
ab3f43c75fa5f2893ffb8c92ef9d1104ef194835 authored over 10 years ago by Hannes Roest <[email protected]>d4c22605e74cbf6a2aba5928d2d8944022f513c6 authored over 10 years ago by Hannes Roest <[email protected]>
b8cb483e490b146076bf4a8b962d3e121d877df5 authored over 10 years ago by Hannes Roest <[email protected]>
9b95c60dda602515a88e8a2727db40a5987834e3 authored over 10 years ago by Hannes Roest <[email protected]>
7340f29a10a8ee4999b1892f543183b08ec0d13f authored over 10 years ago by Hannes Roest <[email protected]>
- add new test files (after change by GSL removal)
f65ea0de1daa1cf832a31cd727d2a899279f6c3b authored over 10 years ago by Hannes Roest <[email protected]>- use Eigen splines instead of gsl
0672a478d4ad4c7a25bf2703af452760cece6469 authored over 10 years ago by Hannes Roest <[email protected]>[FIX] VS2013 compile fixes
001beee4bac5e4bac5dad2169f78da997370334b authored over 10 years ago by timosachsenberg <[email protected]>825f1c7fd63b254e1956e4a508d7b89a85d32c19 authored over 10 years ago by Hannes Roest <[email protected]>
- remove test to show numerically compatibility between the
SignalToNoiseEstimatorMedian and r...
- maxima-searching PeakPicker based on PeakPickerHiRes
- this peak picker uses a cleaner interfa...
- replace std::map with two doubles to keep track of current status of
peak
- A SignalToNoise estimator based on median calculation but
significantly faster than the Sign...
934dc0e0281f55298994cafc80dede554c3f6016 authored over 10 years ago by Hannes Roest <[email protected]>
- ammend commit 9500476d59d38b5ffe0520d2d7fec8cc52c91d19 (r12099)
a33517ba4167332fff5c3b3e5bfcf7327fe3b757 authored over 10 years ago by Hannes Roest <[email protected]>b02a86792e1f876208fdf6f0e8469d8b535b2976 authored over 10 years ago by Timo Sachsenberg <[email protected]>
Feature/python3
1289551cf13e14f4b79d4c3cdb3c0bf05826e216 authored over 10 years ago by Hannes Roest <[email protected]>60a74feff4548b783805dc13d9eff52ce77ecd55 authored over 10 years ago by Hannes Roest <[email protected]>
44f4072e31960ebacbe3b77fd26c56855aa98ef4 authored over 10 years ago by Hannes Roest <[email protected]>
- switch to absolute imports
- use print function
- replace cPickle
- switch from str to bytes in addons
354566840ebe418a48528404cd2768ac9057a8d7 authored over 10 years ago by Hannes Roest <[email protected]>- use now bytes in all custom converter classes
74f0fd767d5ae7cc95304346de2dd240250bff34 authored over 10 years ago by Hannes Roest <[email protected]>14b8022e38405d4b7e6bae41ebb2cc177eb9caf4 authored over 10 years ago by Hannes Roest <[email protected]>
fix Cython code that does not use const in a function which will take
arguments of type "const c...
33a7a95700421487460a7cb319fcae6df6f91207 authored over 10 years ago by Hendrik Weisser <[email protected]>
With "prob_correct", use "Posterior Probability" (without the "Error") as score type and set "is...
64c1470848eb1c39345615efe4d74dd8ab28e85f authored over 10 years ago by Hendrik Weisser <[email protected]>924d70df90db890f723f17459531500248a36168 authored over 10 years ago by Stephan Aiche <[email protected]>
2b82528643e38385a8f37863903d60c4ba21e556 authored over 10 years ago by Timo Sachsenberg <[email protected]>
5e7bc0f18f11878151b82d4eb82d86e84c2b9231 authored over 10 years ago by Stephan Aiche <[email protected]>
* allows to compile easily against OpenMS after installation
* fixed some minor installation i...
883156b852f66eac75b8edfc36aec99a38ad0ef7 authored over 10 years ago by Stephan Aiche <[email protected]>
Conflicts:
CMakeLists.txt
src/openms/CMakeLists.txt
src/openms_gui/CMakeLists.txt
src/opensw...
7917e16349aa6cfa43a918abed6784e8daab36f1 authored over 10 years ago by Stephan Aiche <[email protected]>
* e.g., OPENMS_LIRBRARIES -> OpenMS_LIBRARIES
8399fe253ed6df241fd278d3e9492bc87f6e2396 authored over 10 years ago by Stephan Aiche <[email protected]>ffad177312c80c3e6a2bb0c0a191628c9cc19a36 authored over 10 years ago by Stephan Aiche <[email protected]>
7a75774ee7f4655d667623061bc1a7e5f5bee7a6 authored over 10 years ago by Stephan Aiche <[email protected]>
d3dd5cef96845b4badd316e27894aa88dffd568f authored over 10 years ago by Stephan Aiche <[email protected]>
54cd4da6c84aca4435cde4865971220e979f6ac4 authored over 10 years ago by Stephan Aiche <[email protected]>
3e442e8eaf1e353df6803cd44bf71d159801a15a authored over 10 years ago by Stephan Aiche <[email protected]>
* manages headers and system includes
* exports the necessary variables for use by other subpr...
* moved unity build and copy_dll code to add_library_macros.cmake file
0661ba9ce382eea10c630b72245c15d706e4d4ed authored over 10 years ago by Stephan Aiche <[email protected]>5049d2ce8ef02781850b800f0258feafe5e8288e authored over 10 years ago by Timo Sachsenberg <[email protected]>
- store center of a window in a SwathMap
- allow reading of Swath windows in any random order (m...
Fix/open swath fixes
c29f8622b536d2b540b5e3518191ba81c1ca6701 authored over 10 years ago by Hannes Roest <[email protected]>[FIX] replaced DoubleReal and Real by double and float.
4c74c21f9e158921e82eb6e9b95acecc50b95a4c authored over 10 years ago by Hannes Roest <[email protected]>[FEATURE] fix macosx pyopenms errors
07f4e62b5fd6f480bf09d0f0d0a20a5d7d191264 authored over 10 years ago by Hannes Roest <[email protected]>122275f6eb2b2c02e454e0e88de25e9044242678 authored over 10 years ago by Stephan Aiche <[email protected]>
8dd550475e7636e1f3a8dc300c8c75f3679ea1e6 authored over 10 years ago by Stephan Aiche <[email protected]>
6d9dcf2609968d5bb9c2e2399dd07af371f7c2e3 authored over 10 years ago by Stephan Aiche <[email protected]>
dca20c9a2abebdd99b2a6a7303f6442c883ec12c authored over 10 years ago by Stephan Aiche <[email protected]>
daa19b8c53d25e7953b0cd666af9df610f6d96d9 authored over 10 years ago by Hendrik Weisser <[email protected]>
ad4f46bc60d3266c09053de5079040471323a311 authored over 10 years ago by Timo Sachsenberg <[email protected]>
960e5983319a821d3d36b43db3b2232d4c52ccb5 authored over 10 years ago by Timo Sachsenberg <[email protected]>
- OpenSwathWorkflow allows to not specify an iRT input file (it will
simply assume that no iRT...
- perform computation of overlapping features _after_ the boundaries are
re-computed
2f5f47207166192edd2fd457e08ae991bef74db0 authored over 10 years ago by Hannes Roest <[email protected]>
4d40981a248cf4757f2e68668361f8eb68c40c99 authored over 10 years ago by Timo Sachsenberg <[email protected]>
7b3b99b95c138cc954eeb63c6472e14dab190123 authored over 10 years ago by Timo Sachsenberg <[email protected]>
5c0ab7e40dba39bd5178d7ee5d9d871bb427cb9f authored over 10 years ago by Timo Sachsenberg <[email protected]>
[PYOPENMS] changed extra methods on MSSpectrum
dfa1d5af5ba59d6b52a15fdd6966483b0f61f90c authored over 10 years ago by Hannes Roest <[email protected]>
Conflicts:
src/topp/IDPosteriorErrorProbability.cpp
e04c4ff7fc0a301005d88075d16f1af546521c31 authored over 10 years ago by Timo Sachsenberg <[email protected]>
[FIX] typos in the CMake file
d99263d948fefd794b12569f47a7025ca9337357 authored over 10 years ago by Stephan Aiche <[email protected]>d6afeeffcea2af98dcac25fbd9995ecf79e4a8e9 authored over 10 years ago by Hannes Roest <[email protected]>
[PYOPENMS,FIX] fixed streampos->long conversion
9bff51909e9a9547963ee2570919980b85a76df7 authored over 10 years ago by Hannes Roest <[email protected]>[FEATURE] lib superhirn
79bb8e8029cd7481d1b3ab610b29849a098de571 authored over 10 years ago by Hannes Roest <[email protected]>