github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

[TEST] class test simplified

5c04ffa2f17327641230707a99c1b7a2ffc86ab4 authored over 10 years ago by lars20070 <[email protected]>

[API] renaming from #868 fixed

129596da38078c099e25a49b15a88995754cbcd9 authored over 10 years ago by lars20070 <[email protected]>

[FIX-#890] use compact format for MGF file in Mascot search (fixes #890)

4e9a761eddb567b6fd48640ca3bb92cea657390e authored over 10 years ago by Hendrik Weisser <[email protected]>

[API] renaming from #868 fixed

c35bc3ef3a5e4d3fc8719a2009c18039605fe356 authored over 10 years ago by lars20070 <[email protected]>

[API] renaming from #868 fixed

0df22858fa9c2d3587518a143c8fe59d29396cea authored over 10 years ago by lars20070 <[email protected]>

[FEATURE,PARAM] added option to store MGF files in a more compact format

bae73a3c7cccd08a17748396d81f5a07ef078300 authored over 10 years ago by Hendrik Weisser <[email protected]>

[BUILD] switched to proper find module for coin

* fixed compile issue in LPWrapper

ac79a6eecabb6145e421228f7b65fc334d8f147c authored over 10 years ago by Stephan Aiche <[email protected]>

[NOP] fixed case problem (libSVM -> LIBSVM)

602afaa22172b558befe86bda450d081ed4fc6e2 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] some more cleanups of find scripts

c14d635e7241fd847909b3fd0950092e33668f8d authored over 10 years ago by Stephan Aiche <[email protected]>

[CI,DOC] replaced CMAKE_FIND_ROOT_PATH with CMAKE_PREFIX_PATH in doc and ci scripts

be69e538ccb4addcd1b5fb61d908bf6bf573fdfa authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] fixed find_xerces variable names

c03c2aafdb329a94165cef6520db180d028869d0 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] switched from CMAKE_FIND_ROOT_PATH to CMAKE_PREFIX_PATH as it is the preferred way for giving additional base-directories for find_package

876767e5adbae0f5517653fbc5fad898a4dd5220 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] rewrote findlibsvm to be more cmake like

e1c7ba190dcc51d026abd00cdc4ea1631d7d063a authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] added find module for xerces-c

86690f93f235edb904a0c90c1699a4162b8fe734 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] source files fixed

26277f27c2ff77fc8dce0ad46923a7563f6aa3fa authored over 10 years ago by lars20070 <[email protected]>

[API] old files removed

0055d96c4feeb650d48f7816ab2bd87046fd8a51 authored over 10 years ago by lars20070 <[email protected]>

[API] old files removed

c52c624c8a286f404ce75242f806d23eb39b4fb9 authored over 10 years ago by lars20070 <[email protected]>

Merge pull request #892 from hendrikweisser/fix-pepxml-load

[FIX] Enable loading of some pepXML files that used to cause crashes

03377b64d164c00863e0a73ec8e414541709966b authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #880 from lars20070/feature/fixPeakBoundaries

[FIX] PeakPickerHiRes peak boundaries fixed

52e866f723a61a9b489701a13865bc77c05941c9 authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #891 from WMGoBuffs/MSSimFix

[FIX] converting uniform distributed generators with normal distributions

b709bcf2852f2cd5db55c84f9954f6eab5d9cfe3 authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix-pepxml-load

19ba8e4e53cbf055ad08fd776fc31970a37ba80a authored over 10 years ago by Hendrik Weisser <[email protected]>

Merge remote-tracking branch 'upstream/develop' into feature/fixPeakBoundaries

85f8065bf4a3a940df648351be9e50f73d68a225 authored over 10 years ago by lars20070 <[email protected]>

[FEATURE] added mzid support via DOM parsing

- starting with read functionality on handler level
- new branch(!), after merge/rebase nightmare...

45743b7717043098c83b01107351505478ebc2bd authored over 10 years ago by mwalzer <[email protected]>

Merge pull request #868 from lars20070/feature/MultiplexFiltering

[FEATURE] filtering algorithms used in Multiplex feature finder algorithm

38c40005c8242a8f934ff43451375a6803d3e47c authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #875 from hendrikweisser/AASeq-robustness

Rewrite of 'AASequence::parseString_', increasing robustness of parsing (fixes #818)

1847d4c72f59b9e286dc99d867801eb43651423f authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into AASeq-robustness

60b5e10c905b017768de9b0891bf8f3592d634db authored over 10 years ago by Hendrik Weisser <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix-pepxml-load

Conflicts:
src/openms/source/FORMAT/PepXMLFile.cpp

eb69dd1c304eda2cd4739f744470a25be8ad290b authored over 10 years ago by Hendrik Weisser <[email protected]>

[COMMENT] added explanation for code dealing with numbering of searches

70a06b84d22c5c94f518dad07da4aed839933f8a authored over 10 years ago by Hendrik Weisser <[email protected]>

[API] Cluster() and LocalClustering() renamed

98d2d8240d904c15dfd643a20fff3b334f8abdd8 authored over 10 years ago by lars20070 <[email protected]>

[API] minusOnes() removed

cd4da1da093b2dee292e55a142e9e397a05cfb57 authored over 10 years ago by lars20070 <[email protected]>

[FIX] converting uniform distributed generators with normal distributions

ad3abe2c5d22756190c88b9cb446d8467963dac6 authored over 10 years ago by WMGoBuffs <[email protected]>

[INTERNAL] uncrustified

5827f8fceb7dd199ff7bbce79a203e60f423630a authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] writeDebug fixed

61abde5419c896b952655e3fd36367dc3a9b2ede authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] -1000 replaced by quiet NaN

d4c0e722198599319fb331c989d5e33085463b72 authored over 10 years ago by lars20070 <[email protected]>

[API] Peak2D replaces DebugPoint

5c74c9d7883159cae4501705bdd66732750b6d85 authored over 10 years ago by lars20070 <[email protected]>

[API] API simplified

adf795e4febdd8d525a31980c35f05d37f7c4b6e authored over 10 years ago by lars20070 <[email protected]>

[API] API simplified

292d113b5ae5b07b0aff89ef13d8db1fe56cc9b5 authored over 10 years ago by lars20070 <[email protected]>

Merge pull request #888 from timosachsenberg/fix/#887_IDFilter

[FIX-#887] IDFilter errornousely removed peptidhits in multiple run files

393e18bb793fb41e09dbc6e1e03a34a6dff9f38a authored over 10 years ago by Timo Sachsenberg <[email protected]>

[DOC] typo fixed

8294f03980c03747278291a9677756b078d57e45 authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] pointer removed

c88f869c59bb8ea4563bb30bc0116725a242b295 authored over 10 years ago by lars20070 <[email protected]>

[API] getMZ and getRT corrected

b86214ae30363ebb512a09b2c3c8eed37206ebc0 authored over 10 years ago by lars20070 <[email protected]>

[FIX-#887] IDFilter removed peptidhits if unreferenced in all runs

cfe5e8f6b8ef4db9c389e5069f6c3738cecc6dfc authored over 10 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] more informative exception in MultiplexFiltering

a02a31c0494c5300a0a4bb66fc797f53cef0d029 authored over 10 years ago by lars20070 <[email protected]>

[TEST] MultiplexClustering class test added

55f88ff839442d91ac0ac0992a2344d6959c88b9 authored over 10 years ago by lars20070 <[email protected]>

[TEST] PeakPickerHiRes TOPP test fixed

36ab65e7b1868ad129fdb3e626dad50a2b830891 authored over 10 years ago by lars20070 <[email protected]>

[TEST] PeakPickerHiRes class test fixed

97e6ab965a6414d05a6e1ca84c3937b06e42ef75 authored over 10 years ago by lars20070 <[email protected]>

[API] variable renamed

eac1c9d110dccfbf98cabe051be6a47d0ff5075d authored over 10 years ago by lars20070 <[email protected]>

[TEST] PeakPickerHiRes() class test fixed

9cad595626a4a5fad491919b35653420b3a33572 authored over 10 years ago by lars20070 <[email protected]>

[TEST] class test for LocalClustering() added

ab112f8bc9810077e7270bc5292309ee0fb8b19b authored over 10 years ago by lars20070 <[email protected]>

Merge pull request #882 from aiche/feature/coding-style-improvements

[FEATURE] coding style improvements

2cfdcd6e807b12a9344520d01d9da71ad07a125d authored over 10 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #885 from timosachsenberg/feature/gitignore_additions

[NOP] added moc files to gitignore

e59579d4aab266e7467602a9d54ff3b33fecb65b authored over 10 years ago by Timo Sachsenberg <[email protected]>

[FIX] enable loading of pepXML files where searches of the same file are numbered consecutively across 'msms_run_summary' sections ('search_id' attribute in 'search_summary')

1d21aff231c41dacdfe047ad37b97eff7154c186 authored over 10 years ago by Hendrik Weisser <[email protected]>

[TEST] class test for HashGrid2() added

2495618be701f8449e220e2c06fbe8dc0073f97a authored over 10 years ago by lars20070 <[email protected]>

[TEST] class test for Cluster() added

71bb839dfbaacfb5faee4d86ffe9015db89ee96d authored over 10 years ago by lars20070 <[email protected]>

[NOP] added missing newline

290bc207674b5bdda67f9b3607eb6801c1c9c4d6 authored over 10 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] all functionality roughly tested

fed0ed133dfb6152079ca51b51d69bb8c500bcfa authored over 10 years ago by lars20070 <[email protected]>

[API] MultiplexClustering moved

3a965c058b24c0112881a3bf5e0f87aa6138cd26 authored over 10 years ago by lars20070 <[email protected]>

[API] classes renamed and moved

af4241603156449585104f26d4c888efdacfde5c authored over 10 years ago by lars20070 <[email protected]>

[NOP] added moc files to gitignore

27141ef670088940f7b664a4fd62b9754a0b8ded authored over 10 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] minor changes

ca9dcaa1416f6cc3f4917d0472ffc9571cbb06b3 authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] relax condition for mergin clusters in y-direction

8db245bd6d08c9c4d551628861f3d84f293d5341 authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] extend clusters in Y fixed

66db51b4a4eec987fe886fda215b41ece8bca492 authored over 10 years ago by lars20070 <[email protected]>

[NOP] added cppcheck ignore to false positive

e4c09efdb43d8a605da61c7305237106d24723fd authored over 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #3 from timosachsenberg/feature/coding-style-improvements

[FIX] cppcheck performance fixes @timosachsenberg

1448e48fa42dd6a36a7e1b1ef41b0fcd7a1f8a0e authored over 10 years ago by Stephan Aiche <[email protected]>

[FIX] cppcheck performance fixes

92f16f834631343a0a0d3b2e2622e9886e16a935 authored over 10 years ago by Timo Sachsenberg <[email protected]>

[FIX] enable loading of pepXML files that contain analysis summaries

Some files could not be loaded before due to a segmentation fault.
The problem was that an eleme...

2e59e368050fa96f22094bb182772ce6bb091546 authored over 10 years ago by Hendrik Weisser <[email protected]>

[BUILD,TEST] enabled performance warnings as cppcheck errors

7290bf6792b74081587092616359f302cf0e8c16 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD,TEST] added additional option to cppcheck targets to use inline suppressions

* added inline suppression to false positive in TOPPViewBase

497bb95a4b21894ee1d6ffaa4d1256ae1277cb47 authored over 10 years ago by Stephan Aiche <[email protected]>

[NOP] removed unused SequestAdapter.cpp

3bafc74b860d5a9c6d299bca38e1f8bb08166133 authored over 10 years ago by Stephan Aiche <[email protected]>

[NOP] removed unused QcMLHandler.cpp

ed3d3f1b8c3c0d4ba863ff74711a9a1a45e6ec89 authored over 10 years ago by Stephan Aiche <[email protected]>

[BUILD] use self compiled cppcheck instead of old system version

96f116d3722e3cd0a96718f5d23c0ab05ac49667 authored over 10 years ago by Stephan Aiche <[email protected]>

[TEST] enable cppcheck performance tests

ce21b0f59a1ea732d5d66f82235f34df254628ad authored over 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #2 from timosachsenberg/feature/coding-style-improvements

[FIX] cppcheck fixes contributed by timosachsenberg

71dd3d117d7aede42e282a36f15a5c273272d054 authored over 10 years ago by Stephan Aiche <[email protected]>

[FIX] cppcheck fixes

5cd4c0f94de8e0e204568cdafab44f692e6a610d authored over 10 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] index bug fixed

d3868bd02c3c09ada4e296cfe0cb106879f955a1 authored over 10 years ago by lars20070 <[email protected]>

[INTERNAL] index bug fixed (Point -> CellIndex)

067d4beca7e887214f78ffb56ee66c3e522532a2 authored over 10 years ago by lars20070 <[email protected]>