Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

specify Linux as UNIX but not APPLE

e64480e3492e7ea78207ae0737063832202ce8c9 authored almost 2 years ago by axelwalter <[email protected]>
dbg msg

051a048920423ed06473496e0116291917c5015f authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
debug msg

daeb97fee8f895c900c758bcb9b733b5b110c78d authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
restructure and fix knime packaging. mainly on macOS. allow Qt built with RPATH (new default in brew). remove Resampler since it pulls in GUI libs.

cdcb131ec3c8f4090c23a8fa8e40e66ef0702f4a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
check for OS Ubuntu in sirius tests

4276657e2886474f811861f49b41fba3132f6e02 authored almost 2 years ago by axelwalter <[email protected]>
test SiriusAdapter 8, 9 and 10 on Linux only

b630f6a8d4f8c9e0a1f35099d7d6006f89d18bcf authored almost 2 years ago by axelwalter <[email protected]>
reverted some changes to sirius related files that should not be on this branch

aa715b9c714a5e7081c1eff22246dfd2529e9ff0 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'OpenMS:develop' into feature/new_thiols

c43d6768dfdccf3a8b15c7d0d1185d726bfc90fb authored almost 2 years ago by Samuel Wein <[email protected]>
change OS name to UNIX

66fed11af3a03a1db12fc77aa8b94a8d71ebfe8e authored almost 2 years ago by axelwalter <[email protected]>
test SiriusAdapter 1 and 3 spec only on Linux

34720cf186a017a1f23413d22df9af03eb163509 authored almost 2 years ago by axelwalter <[email protected]>
add sum formulas again

0b19a1509ab97c10fc23da87f3e10cbbf0b2f5bc authored almost 2 years ago by axelwalter <[email protected]>
more whitelisting

78eb90d262d7d786febaa2ae812cd363d6378588 authored almost 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into refact_toppview

36c52d61db127322571bf7636c02ef4cd6b4d8fd authored almost 2 years ago by Timo Sachsenberg <[email protected]>
add more whitelist items

135258a4412230c4f1e2ba1a4ae36e305f4e3e9c authored almost 2 years ago by axelwalter <[email protected]>
Merge pull request #6420 from OpenMS/update/linux_buildinstructions

Update linux build instructions

5f8bfdb19cdcb1b8ed6e62d626a65883cdc1617c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
sirius test whitelist updates

3e9c3ea8432189d42ddca22f0cc1efc773a1a048 authored almost 2 years ago by axelwalter <[email protected]>
Merge pull request #6415 from OpenMS/fix_mac_signing

Remove signing for mac dmgs, as it is broken

4a8835662d7f71290eea21c888c08772a702bc79 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6114 from hendrikweisser/idfile-json-export

JSON export for OMS (SQLite) files

961f4167ee0c25e7b954982e671e8c5bc9a974ec authored almost 2 years ago by Samuel Wein <[email protected]>
update sirius test whitelists

307b260dfca3a53e300c386175b3bf262cc14165 authored almost 2 years ago by axelwalter <[email protected]>
Update package_dragndrop_dmg.cmake

Try to keep pretty cpack

fe07d37af16f9828cc109f95414960e165f34abc authored almost 2 years ago by Samuel Wein <[email protected]>
Revert "Update package_dragndrop_dmg.cmake"

This reverts commit 9a96697c18f35b3923c361bc804ca47cbf76aa0b.

f92a2a7322e830d0013a80f095d6396444a93dcb authored almost 2 years ago by Samuel Wein <[email protected]>
Update install-linux.doxygen

b7b134c03b28ad10d723398796dc165c85d36f5b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into idfile-json-export

da3106cb680b9926cd7d5149e8ada4c1de1525bc authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

Remove unused parts

9a96697c18f35b3923c361bc804ca47cbf76aa0b authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_mac_signing

06a5ae19b476ba5acb894c8dcf6891d8be182195 authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

comment out signing behaviour

8bac6894a133bb3558259288211e5e73f3b73f22 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6416 from OpenMS/poshul-patch-1

Fix install-qt-action

051d6f90829b33051dcf4ee5a46020d5a8676801 authored almost 2 years ago by Samuel Wein <[email protected]>
Success in using libtorch inside FLASHDeconv.cpp

30ff7e85117de21f867eb34a9158c6465fb9d4ec authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6414 from OpenMS/fix/pyoms_docstrings

[FIX] pyopenms docstrings

2da1067140598fc2e8823f3bb8a05e303a2ad2ed authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

c96cc4f17fb53a8be63e04c1efc144656b66fd6e authored almost 2 years ago by bielow <[email protected]>
fix more compiler warnings

61b954cc862c68c3fb33fcc6f74ea4315d40095f authored almost 2 years ago by bielow <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

5688f8d1fd760f9fac697f80890011c4603a7d6e authored almost 2 years ago by Samuel Wein <[email protected]>
Update package_dragndrop_dmg.cmake

dd5c4b504aefcc4ac522673af02223ec431ae6f6 authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

add qtbase to archives

3cbf25df3e9ae3800a29d5b2ee8ce8cf8dcb9305 authored almost 2 years ago by Samuel Wein <[email protected]>
Update pyopenms-wheels.yml

More changes to pyopenms-wheels.yml

57fe56793c6f4469729fb12f2878e0eed0120287 authored almost 2 years ago by Samuel Wein <[email protected]>
hotfix for jurplel/install-qt-action/tree/v3

jurplel/install-qt-action/tree/v3 changes the `cached` keyword to `cache` for... reasons. Update...

50674e6627157a4da36da179fe7dc78c7a9fc319 authored almost 2 years ago by Samuel Wein <[email protected]>
estimateFromRNAMonoWeight and estimateFromPeptideMonoWeight are implemented in CoarseIsotopePatternGenerator.cpp

0cb05f4f10fc090053c65e5568e071da03073f91 authored almost 2 years ago by KyowonJeong <[email protected]>
update SIRIUS test whitlists

925d6d1f5de2f5bf004db7868e8c58f54a66467d authored almost 2 years ago by axelwalter <[email protected]>
[FIX] pyopenms docstrings

d901857ad922725b37c88723afadcbda7dc499d0 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

aaec4d5749837bec406cbd052bd2b01aaaeaf1f5 authored almost 2 years ago by Samuel Wein <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

5ab422a626485607e5d829d6e44b670ad41d5fdd authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

fe2abd77a016b52a8248a3e8cb9c52d396333732 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

9afbc077beb57c197af93c30dc30d9c78db01309 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6390 from jpfeuffer/tmt18plex

Tmt18plex

4e56919175af4bdb1a4146195a1fbd0da4e846ce authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6407 from poshul/fix/bump_cmake_min

[UPD] Bumped min cmake version to 3.15 to match with pyopenms

b4f3d95564df231a4737b6faf08d550db19b7d6b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

52cf3cd32a124e8fcd536372b63263d5f227d7b7 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Isolation windows crawling reimplemented

92f1f7844355ea9e7fdb6b6cffe5e9a966b12138 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

593b8bec965a9e39a38c31bc4a8a3eed065c07ec authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

67acfe2879dd2a1cdf70feb1ac14046c1215e76a authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Upper bound bug fixed

d9bfdc75cce3bcfac7b4a5d11ea00aa5ffac8048 authored almost 2 years ago by KyowonJeong <[email protected]>
add new test

7e8375116660b3dbedd9ad16c6fb373c36f59c43 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Target mass bin bug fixed..

174007edcebddd69ce7f5e12acd42085d9d66f6f authored almost 2 years ago by KyowonJeong <[email protected]>
fix pyopenms

c59093235cec76c890763ec1f7d5185c7cab73b7 authored almost 2 years ago by jpfeuffer <[email protected]>
fix docs

c71ce3fa1ceef6a1612da292f69f0da12c651887 authored almost 2 years ago by jpfeuffer <[email protected]>
fix tests

c02724858d9ec6fe81c5f06f3b9ea974cf2ab870 authored almost 2 years ago by jpfeuffer <[email protected]>
fix old classes

814fcb294f012ee428c29b311f66ae231c942b35 authored almost 2 years ago by jpfeuffer <[email protected]>
allow any number of corrections

d5cefabaf8953ed8cfa2d13a0c99b1a376a3e546 authored almost 2 years ago by jpfeuffer <[email protected]>
more fixes from code revie

e52e4ee639fa87f35125a543e511b1950d07d1ac authored almost 2 years ago by jpfeuffer <[email protected]>
fix last tests

fe6f1f562181ed95bcc8e31c672871f5bfe77ae5 authored almost 2 years ago by jpfeuffer <[email protected]>
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

9edbf4155b3d3f67b8390f4d0e27e7fbac686e3b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Add missing includes for documenter

3f818837f68075c50b3496dcbf786d9da0245d9b authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix pxd

f2df99fcd5dd543e398363588a692ef90b47280c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
code review

6ae258944924f17a17f7ae6c7166ca873a89e6cf authored almost 2 years ago by jpfeuffer <[email protected]>
Update src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h

Co-authored-by: Chris Bielow <[email protected]>

62ca9f0a196a0d0f2f824a53c3954c86e0d7e776 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
First crack at adding 18-plex support

73bd096042392c6d2f3516135989f5bf73011062 authored almost 2 years ago by Radu Suciu <[email protected]>
Fix 18-plex isotope correct test matrix.

Note that I'm still not confident about the correction matrix itself. This commit just adjusts t...

510582ebd8bc9ff44fdfca4ad53a12b2b858a52c authored almost 2 years ago by Radu Suciu <[email protected]>
Update correction matrix

2def54f3c63bffeb6be75fff9cdfcd3bc749b14e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6408 from OpenMS/hotfix/pyx

Hotfix/pyx

d92400b680de68cca76131b9f44089339fec86a1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Target mass bin bug fixed..

de662926d315f042f6c862c901d79db90237a8cb authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented. Target mass bin bug fixed..

1caa47cb06156ac93781b45f2f316a5f6aa4f6bb authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHIda inclusive exclusive targeted mode implmented.

bce0efbf204add13ad5311f5eee92d04844c2c00 authored almost 2 years ago by KyowonJeong <[email protected]>
[HOTFIX] wrong variable pyx files

c50cfaf3e9e5119f6e9d9355ed3cbad9ff762ae0 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update updatecheck url to new cs subdomain

37d625ecd662c083d137fcdf2b3a3f0f4d65eb9d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[HOTFIX] wrong variable pyx files

f749c8a09058759ee4cd2275fe43a61bd623a7d3 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix/bump_cmake_min

78cd4734d021f304d5ce292b3973d3ffbd5d4ff1 authored almost 2 years ago by Samuel Wein <[email protected]>
[UPD] Bumped min cmake version to 3.15 to match with pyopenms

805750ecc5c010afbbb32e6e8958a5790c96cb48 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6406 from OpenMS/poshul-patch-1

Update openms-ci.yml

2876447dcbd52d0c703af381de4d82e0342ade83 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6369 from rahul799/fix-docstrings-2

fixing docstrings - 2

432a4d0c5fca4b407df600cdd9179e10f99ebbea authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into refact_toppview

c2185daba568f6f93f04e9db65fcbe3429549b5b authored almost 2 years ago by Chris Bielow <[email protected]>
extra line chr removed

f426b4dce2e77246a3cc8d6981c4a77fcc1cc1e2 authored almost 2 years ago by rahul799 <[email protected]>
Update pyopenms-wheels.yml

update actions

25f20bd3442a46ef409293b8cb1bb8c6bbcb7e4a authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format_add_and_commit.yml

update actions

c02074fed48f5d38b6e240888c092678c64c8bdc authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms_clang_format.yml

update actiona

e57db2b172e3809c8593c6f8e109e2392b7b33d8 authored almost 2 years ago by Samuel Wein <[email protected]>
update fingerid test

3a86233e9c640dab066feccb8a683ed4af01cfdc authored almost 2 years ago by axelwalter <[email protected]>
Update openms-ci.yml

update jwlawson/actions-setup-cmake for node 16

e62e56246e1baaa2aaf3159964c7a7ae942a0664 authored almost 2 years ago by Samuel Wein <[email protected]>
turn SIRIUS test off

local test will fail without login

5a23c04f679afbc5d51efbc8b45e012e95179db6 authored almost 2 years ago by axelwalter <[email protected]>
Update dockerdeploy.yml

update actions

3428c29de09276be47726163292325df2c6c9c02 authored almost 2 years ago by Samuel Wein <[email protected]>
Update cppcheck.yml

update cppcheck versions

4101d32ee34eb1a3f966e6a9c9b84669bf455f20 authored almost 2 years ago by Samuel Wein <[email protected]>
Update openms-ci.yml

Bump `actions/cache` and `actions/checkout` to v3

3465b9775e5afc2f0a720dfa2d34ddc780fbc55b authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6393 from poshul/feature/new_cyclophosphate

[feature] enable 3' cyclophosphate as a RNA mod

348b4ad6b5c6da7026f668a3f9aac3b0e44ba342 authored almost 2 years ago by Samuel Wein <[email protected]>
fix nightlies

2f63f3f3418fe174d3673b6f627667f64ad7c233 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into refact_toppview

d55a2dbe9d1e53053c640b14b41e275fd3cadc5b authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6396 from OpenMS/feature/count_ics

Feature/count_ics

be3cbd39d26e7d94dd21b4aef59a89feb9519403 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6401 from OpenMS/fix/pyxWarnings

[FIX] fixes some signedness comparison warnings in pyx files

1b50da23dbe7ab3e81fb5c6b3e43ccd31f180829 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6402 from cbielow/fix_dtor

add d'tor to fix LNK2001: unresolved external symbol "public: virtual…

350762eb38e603a33608d6604a64410576556d81 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix_dtor

23f13d89b03416c3d6dbdd025fcb696b0a0fe042 authored almost 2 years ago by Chris Bielow <[email protected]>
add d'tor to fix LNK2001: unresolved external symbol "public: virtual void * __cdecl OpenMS::MSExperiment::`scalar deleting destructor'

some code rearrangements
some docs

961a198047ae248c0fade14fd6e1f7412bc794cb authored almost 2 years ago by bielow <[email protected]>
Update src/pyOpenMS/pxds/EnzymaticDigestion.pxd

Co-authored-by: Julianus Pfeuffer <[email protected]>

5666786c16f03c75bd450af54cf58a04f4da4548 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[nop] Removed lots of commented out code, a lot of this looks probably worthwhile to keep on a separate branch, but should not be merged

bc849f2cd70a542b052c1ab0ebd3d938b7e3b947 authored almost 2 years ago by Samuel Wein <[email protected]>
minor C17 refresh

b56ec1b38b0c084f30d92d15a9348ac6fe50f4f9 authored almost 2 years ago by bielow <[email protected]>