github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

[TEST] add test for BSpline2d

de1caaf7454993fa34049cb83adf03039fbd65bb authored about 10 years ago by Hannes Roest <[email protected]>

[FIX] fixed unitybuild problem with eol-bsplines due to missing namespace

f4cee64e547789b522e79658aa3160f1c8f70b6a authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX,PYOPENMS] fix tests

45b7066e664560b09e8ffec4bc2c50cee16913d1 authored about 10 years ago by Hannes Roest <[email protected]>

[CI] disabled unity build as it regularly leads to errors; for now it is commented out as we may want to re-add the tests if OpenMS got a bit smaller

87ed6974a58c010259faa845933e242e8fa2a0bc authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixed symbol export error occuring when compiled with gcc

0b705e6a76393c58dd7b5a1bc0c4392144895158 authored about 10 years ago by Stephan Aiche <[email protected]>

[FEATURE] add bspline

204ddd92bc8e3e5f945e7f315bf625b4b7fbd8b5 authored about 10 years ago by Hannes Roest <[email protected]>

Merge pull request #990 from aiche/feature/transformation-model-fix

[FIX,FEATURE] TransformationModelInterpolated readded

172b938658f862ba8bb91ea21486c8e8455cb743 authored about 10 years ago by Hannes Roest <[email protected]>

[FIX] fixed some compile warnings

22bcce0797a83afcf3457835c080e2bf27d04dcf authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #1014 from cbielow/feat/TV-intensity

[FEATURE] TOPPView: group separator for mz,rt and int values in 1D and 2D canvas

74e7898b79ba8afa6da7dfa77ccbea87cd96a15d authored about 10 years ago by Stephan Aiche <[email protected]>

[CI] fixed invalid build naming in CI

69be5a448bfe8131b05407efce30d554c0855e8c authored about 10 years ago by Stephan Aiche <[email protected]>

[PYOPENMS] adapted pxds to reorganized transformation models

a805c5ec5e3bbcc122d9278e7b8261dc8ea2455a authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixed integration of Fido tests

b8d06e0b1fc2eed89b60d44bad3e85dc990ba876 authored about 10 years ago by Hendrik Weisser <[email protected]>

[INTERNAL] added WITH_GUI define to OpenMS so tool handler can decide on his own if he integrates the GUI tools or not

7c553068aa58c42040c8edb918e69efd8b6ce242 authored about 10 years ago by Stephan Aiche <[email protected]>

[CI] reduce number of parallel jobs to avoid getting killed

07c2e1b38efdc5d1690b54dba6820367bd8b4ef0 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixed failing ToolHandler test; removed ImageCreater from test since it can be missing when compiled with WITH_GUI=OFF

06bee75b6573673b0cfdbdea211aeada1ba38394 authored about 10 years ago by Stephan Aiche <[email protected]>

[INTERNAL,DOC] cleanups

90f541befe41fcb5eb202aa428d1d58dc6c18721 authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] re-added GUI tools to VS source groups

edea3463516ea8565d15af16542f34409bb92b19 authored about 10 years ago by Stephan Aiche <[email protected]>

[CI] integrated non-gui builds into travis build matrix

bbabb5b223fc635ea643ded7b74355910f427d9d authored about 10 years ago by Stephan Aiche <[email protected]>

[TEST] also disabled the corresponding topp tests if the tools are missing

e06ca34e9b289977acf6646b85a210dcddfdbb41 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixed moc warning/error for GUIProgressLoggerImpl

d0ee97bcf1592070434f2ccfae0bad92ed3c5e8b authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] append gui tools to topp/utils list if build with WITH_GUI=On

e2d2de5df355c619819056b24bf4e0b34e7ae9f5 authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] added WITH_GUI option (default ON) that, if set to OFF, disables all GUI parts of OpenMS allowing to build without qt-gui

8c3a1cafee105b210db9e3d8a6f6e7d479ee08f3 authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] removed dependency to QtGui from OpenMS

4c72b66c7a9a540e9c380286824c085684d5cc69 authored about 10 years ago by Stephan Aiche <[email protected]>

[INTERNAL,FEATURE] moved GUI based progress logger to openms_gui

* registered at factory during QApplicationTOPP startup
* access to logger GUI in OpenMS leads...

2e127a579772b1743ef3021e8d05feb08065a090 authored about 10 years ago by Stephan Aiche <[email protected]>

[INTERNAL] removed QTextDocument based html->text in mascotremotequery

* needs fixing to avoid showing html in case of an error

a6c6fa74b8462e679b6ed30668123420d7a7a6bf authored about 10 years ago by Stephan Aiche <[email protected]>

[INTERNAL] moved ProgressLogger implementations (CMD, NONE, GUI) to separate classes

* cleanup of ProgressLogger header
* minor cleanup in TOPPBase

c604c8d5fec175f21247575ca2de5ae4e6dd8648 authored about 10 years ago by Stephan Aiche <[email protected]>

[INTERNAL] switched to factory to hold the different ProgressLogger implementations

83c014ae08d867fcb35aa596439adccd9d40dd52 authored about 10 years ago by Stephan Aiche <[email protected]>

[TEST,INTERNAL] switched from QRegExpValidator (from QtGui) to boost::regex in tests

b752011d8d4ba0f453ecf71b4f3a8461a059a195 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #985 from aiche/feature/eol-bsplines

[FEATURE] bspline support using eol bsplines implementation

20649ffd0004cfb248260af26a74a0d49b57a8c7 authored about 10 years ago by Hannes Roest <[email protected]>

TOPPView: group separator for mz,rt and int values in 1D and 2D canvas

8916ea08c58b3986b9e033ce3d8b01b02194dfb1 authored about 10 years ago by Chris Bielow <[email protected]>

some const changes

6244ea7fb673803a961a03d6a64952b6f5f33b8c authored about 10 years ago by Chris Bielow <[email protected]>

[TEST] added (small) test case for FidoAdapter

2a72da7e85022a21c9c124a60a5a0afead88b98d authored about 10 years ago by Hendrik Weisser <[email protected]>

[RESOURCE] unimod #99991 to #99995 added

741d7de289046118c5e2ce159ec90ce2c167a541 authored about 10 years ago by lars20070 <[email protected]>

[RESOURCE] typo fixed

404c97b75217daf3b3125049c48fddfe01a38c3f authored about 10 years ago by lars20070 <[email protected]>

[TEST] ModificationsDB class test fixed

b33445ea0fbbec1b152ede08da3276b71d7c5fd5 authored about 10 years ago by lars20070 <[email protected]>

[INTERNAL] more instructive exception message

20b543bfb27e41a039d4ac61849fcecd1da68ec5 authored about 10 years ago by lars20070 <[email protected]>

[BUILD] renamed directory with test data from 'SEARCHENGINES' to 'THIRDPARTY' to reflect more general use

fa859a4bca2b3700f32e9a65ca84afb3b7945fb3 authored about 10 years ago by Hendrik Weisser <[email protected]>

[RESOURCE] unimod #320 modified #1414 added

9df0d25c868ba63c01550e7446633d60161a44e2 authored about 10 years ago by lars20070 <[email protected]>

[RESOURCE] Palladium added to Elements.xml

0906af92092f0a15af40f68350fe10ff8d23596e authored about 10 years ago by lars20070 <[email protected]>

[FIX] fixed compile error

571d86ec26b1543ddee7edb0e52065b0d897545b authored about 10 years ago by Hendrik Weisser <[email protected]>

Merge remote-tracking branch 'upstream/develop' into fix/methylSILAC2

0624b30f23c2086ef8065727696cd965f8be7e1f authored about 10 years ago by lars20070 <[email protected]>

Merge branch 'feature/eol-bsplines' of https://github.com/aiche/OpenMS into bspline

d8739d58e0d6f086c3006644487d1872a7b24323 authored about 10 years ago by Hendrik Weisser <[email protected]>

Merge pull request #1012 from cbielow/fix/feature_class_size

[FEATURE] decreased memory footprint of Feature class by up to 44 percent

fe393c877868bb809ee7f3b3e6065557478eb136 authored about 10 years ago by Stephan Aiche <[email protected]>

[NOP,TOOLS] added bash script to apply uncrustify to all non-test cpp and h files changed in the current branch (w.r.t. develop)

95f76e016c78a1c6d7df75d15b412aacf5b2242d authored about 10 years ago by Stephan Aiche <[email protected]>

[NOP] uncrustify(ed) all files touched in this branch

1f0204d300ea9072f7ad8297bd12499fb3e7e788 authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] renamed directory '3rdparty' to 'thirdparty' for consistency with existing directories

f1f79b43c2036f25477e152fe6d71511b3607acc authored about 10 years ago by Hendrik Weisser <[email protected]>

deleted SimpleSeeder and SimpleExtender as well

56e6b12adf8227102d87fe05d3ca5d2cb5745f75 authored about 10 years ago by Chris Bielow <[email protected]>

Merge pull request #1011 from aiche/fix/external-project-doc

[FIX] external project doc

3a4b94b00dd6f838def0f79cb4885736fa7eb561 authored about 10 years ago by Hannes Roest <[email protected]>

missing model tag in featureXML is non-fatal, fixed tests

f44ce15a86d3cc2a2b7ae139ea6e4c37afb4b039 authored about 10 years ago by Chris Bielow <[email protected]>

[DOC] improved documentation for external projects

bb6bae375da540c98dd718f9ee3f0676d101f4aa authored about 10 years ago by Stephan Aiche <[email protected]>

[DOC] renamed README to README.md to enable rendering as markdown on github

2686e9a072480db772fb9f90d704793caa8f6cc1 authored about 10 years ago by Stephan Aiche <[email protected]>

removed dependent classes which were deprecated before

2b14a6113d157da913df9e871c50cb7800e16ba7 authored about 10 years ago by Chris Bielow <[email protected]>

Merge pull request #1010 from aiche/fix/external-code-tests

[FIX] external code tests updated/fixed

c90928f5368f34cbb88a45c2eba51981f7656aed authored about 10 years ago by cbielow <[email protected]>

[NOP] added check if include directory variable is defined

e3d93f5f9ad444fe2c88d116195cce221c7cdd32 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] updated external code example in share

d2df9cc604e319ccb68c76b3591523e3a18b6e20 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] updated external test project to new OpenMS layout

15d3c82bdd73c27e0f731c778b8bea0436dcc1d3 authored about 10 years ago by Stephan Aiche <[email protected]>

[NOP] removed trailing whitespace

f75b5bc72e11a9d4740601cc3732f2424bc2aef2 authored about 10 years ago by Stephan Aiche <[email protected]>

[BUILD] moved test files to src/test/external

abb2ed212d7fc06bed8ddcd6dc4a4e00215b5891 authored about 10 years ago by Stephan Aiche <[email protected]>

[NOP] remove two mistakenly added files

5427d2a3041e0a6ae2230ca85127feb9ffee634e authored about 10 years ago by Hannes Roest <[email protected]>

remove ModelDescription from Feature, saving 152 bytes per Feature, i.e. 44%

4f22044738b2876093c5af207958506ed3c3ae46 authored about 10 years ago by Chris Bielow <[email protected]>

[RESOURCE] removed (R) tag as in a118d59

43ef11ab3c5085ce43f2dc9ec361e5e7a3275670 authored about 10 years ago by lars20070 <[email protected]>

[RESOURCE] unimod.xml updated with newest version from unimod.org

5e8dafb9259fb1802b0751b39f3eb16f78636d59 authored about 10 years ago by lars20070 <[email protected]>

[INTERNAL] removed unnecessary != 0 check before calling delete

3eb810ee28e7702064fc863b543cec6cdea886b4 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #1003 from aiche/fix/MSSim_test

[FIX] fixes random fails of MSSim_test

5660df4e5209380df8d3ea10e500b61b319a1570 authored about 10 years ago by Hannes Roest <[email protected]>

[CI] some minor travis-ci improvements

eacc057c013b62ff6bebb909545f2f98c29ed64c authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixed some "old-style-cast" warnings and added StringUtils to sources.cmake

fbc85863478c7b1a9bf64a8c508c1f7d12ad39a6 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] fixes randomly failing MSSim_test due to multithreaded generation of random numbers

8580f18ef92f5ad848857f81e00f8b9e35a5d994 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #1002 from hroest/fix/pyOpenMS_fixes

[pyOPENMS] wrapped more functions and classes

6a0d39b473e501c5b4ab30d31d3a353eed19a873 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] re-enabled interpolation models

7c63806952c01a4552e7decb14f556fa8c48f568 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX] tmp: will be changed as soon as bspline is back

* since we changed the underlying cspline implementation slightly different values are reported...

792c62f7995ae0c6a6ad88f1f9c2098c3210933d authored about 10 years ago by Stephan Aiche <[email protected]>

[DOC,NOP] documented use of PIMPL idiom in BSpline2d

4e2945af23aa8aa0865419139d84f9826fdae040 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #1001 from hroest/fix/pyOpenMS_test

[FIX] fixes for failing pyOpenMS tests

4e771a5a42341f5390cae05fb2e6f432c4f72877 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge pull request #996 from lars20070/fix/SplinePackage

allow for SplinePackages based on just two data points

429e38e9557f4f7a2905a1ea5505cd5898b27051 authored about 10 years ago by Hannes Roest <[email protected]>

[FIX,TEST,PYOPENMS] fixes last tests in FeatureMap

6bcbfee9ba968d337ce0a5bac1c57c4b34f6712c authored about 10 years ago by Hannes Roest <[email protected]>

[TEST] checking linear behaviour in case of two datat points

5c3662d19175d4b3adadb5556ee61aad5795b0aa authored about 10 years ago by lars20070 <[email protected]>

[FEATURE,PYOPENMS] add JavaInfo class

b53075d48a78d6935d5294d756d2c07357000474 authored about 10 years ago by Hannes Roest <[email protected]>

[FIX] re-add DIAScoring pxd for return values

c30d72601d225e077546323397c3cd46b10514cc authored about 10 years ago by Hannes Roest <[email protected]>

[PYOPENMS] wrap additional classes

ab159b9ffb50480e6603ac9d918d1be2d5afba33 authored about 10 years ago by Hannes Roest <[email protected]>

[FEATURE,PYOPENMS] wrap getName for quantitation method

e7a26d01375affb19347a8203c4e4583d8e9d632 authored about 10 years ago by Hannes Roest <[email protected]>

[FEATURE,PYOPENMS] wrap contains of EmpiricalFormula

8f52f81e7a4ec71d3ff198510537ce05b34b073d authored about 10 years ago by Hannes Roest <[email protected]>

[FEATURE,PYOPENMS] wrap PeakFileOptions functions

fd9d152d60bd26c3f58d52bc36b24d6ebe165a65 authored about 10 years ago by Hannes Roest <[email protected]>

[FEATURE,PYOPENMS] wrap two new classes

f8ff30f0c6a9b0272aec7ceb81688055f32bbe3f authored about 10 years ago by Hannes Roest <[email protected]>

[FIX] add const to constant functions

246a551c15b692ee32c7ac0a4362d4ed181a7d03 authored about 10 years ago by Hannes Roest <[email protected]>

[FIX]Fixed mwalzer:#3 - now all PeptideEvidences are kept.

15a9d261466c36a90c3bb504861aa0db46543791 authored about 10 years ago by mwalzer <[email protected]>

Merge pull request #1000 from uweschmitt/pyopenms_fix_template_problem

fixes problems with ">>" generated in nested C++ templates

841c5ccb4bcf2cfc9f0f31b3e29c0a156f4da691 authored about 10 years ago by Hannes Roest <[email protected]>

[COMMENT] comments removed

fda642ae322936ef502c38427a0c2f68cf9e8d6b authored about 10 years ago by lars20070 <[email protected]>

[TEST] testing SplinePackage constructor with one and two data points

78217ecca7aedb931121f68449e2e5d2a73b5a7b authored about 10 years ago by lars20070 <[email protected]>

[INTERNAL] fixed comments, formatting and precondition

57d3c6705f43aaf03d7a5aec197f5af7dfd12618 authored about 10 years ago by Stephan Aiche <[email protected]>

[FIX,TEST,PYOPENMS] fix after pull request #959

- fix errors in 4308f5f7d60982ef9f73931b7d0fa914088253b7 (see #959)
- typos

e6f003d2626bee0324ceb005995fc2504f526b60 authored about 10 years ago by Hannes Roest <[email protected]>

[FIX,TEST,PYOPENMS] fix after pull request #988

- testfix after f9cfd1269c268a72c835c2d0da3f0094cd78adae (see pull request #988)
- hasElement wa...

af25243837d061801fda53db58044a3aaba4cc23 authored about 10 years ago by Hannes Roest <[email protected]>

fixes problems with ">>" generated in nested C++ templates

at least clang-503-0.40 refused to compile experssions like
"std::vector<OpenMS::DRange<...

5635b5f12334ef295b491b536e8ff26855bc5793 authored about 10 years ago by Uwe Schmitt <[email protected]>

[TEST] fixed small test compile issue

1fca32e492889fd119fa9e5bd6085cc31f2aac34 authored about 10 years ago by Stephan Aiche <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into FidoAdapter

Conflicts:
src/tests/topp/CMakeLists.txt
src/topp/PeptideIndexer.cpp

fdaff2dc61712afe2f79f6e0210ee038c02a3a6c authored about 10 years ago by Hendrik Weisser <[email protected]>

Merge branch 'develop' into feature/transformation-model-fix

Conflicts:
src/pyOpenMS/pxds/IsobaricQuantifierStatistics.pxd

3dbab67059ef71d181d728cdea18c75742f7a28d authored about 10 years ago by Stephan Aiche <[email protected]>

[DOC] clarified usage of parameters when running Fido instead of FidoChooseParameters

df4315331eb403dadadad364d2d19be2b30b4245 authored about 10 years ago by Hendrik Weisser <[email protected]>

Merge pull request #968 from timosachsenberg/feature/TextExporter_exportPT

[FEATURE] export PT value analogous to predicted rt value in TextExporte...

a79c4de3e8df43ea5d861d2e42eeb152fe23029e authored about 10 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #993 from timosachsenberg/feature/sort_on_load

Feature/sort on load (mzML, mzXML)

2d25cf5d66b73f7aad8e8fad954f89ae7b096720 authored about 10 years ago by Hannes Roest <[email protected]>

Merge pull request #995 from lars20070/fix/CubicSpline2d

fixes CubicSpline2d constructor exceptions

b6dac1b6ed81311699ee19586163fdfab052d2f8 authored about 10 years ago by Hannes Roest <[email protected]>

Merge pull request #994 from lars20070/fix/FeatureFinderMultiplex

fixes mass traces in featureXML output

a55d592485218c081c4c3dea90d5e9e185e16ef2 authored about 10 years ago by Hannes Roest <[email protected]>

[FEATURE,PARAM,DOC] added option to run Fido without parameter estimation; added saving of parameter estimation results

0ff85175ada8f433c27f7a7f5984731b236aaa2f authored about 10 years ago by Hendrik Weisser <[email protected]>