Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Update openms-ci.yml

769d46a1dd52d7c96f1d4f08981e1d0cc38983a5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
also fix other parsers

a94936af855bbb765fd0a6a9ab28eca64eb6ca8d authored almost 2 years ago by bielow <[email protected]>
Update openms-ci.yml

0e4962c990d95fe6d2cc6102fc697ee82417c9b2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix mzMLHandler to use the correct types

ab337545980648944d7acbbae03c96209da3f737 authored almost 2 years ago by bielow <[email protected]>
add 32/64 bit integer conversion

0b030bacc73b235147434c60108d67055585da90 authored almost 2 years ago by bielow <[email protected]>
Update AUTHORS

Added Amanda Wein

6975926b527740c0d0fcf4f1183dbda6aeb8fe36 authored almost 2 years ago by Amanda Wein <[email protected]>
Merge branch 'develop' into feature/clang_performance

c9091c52eb21fd1c2950971fa34c88015558f9d9 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Added a link to open a new issue.

The new link is in the section "Reporting a New Issue".

3d51aa01d745376ed89afd2139ee65e064e468da authored almost 2 years ago by Amanda Wein <[email protected]>
Update openms-ci.yml

186f06083ccf952731737226a578ac1f0e58f213 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6446 from OpenMS/restrict_nr_processes

restrict number of spawned processes

b18cddad4d67a0b233902f712d2abdcc1ef2681d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6409 from OpenMS/feat/update_uc

update updatecheck url to new cs subdomain

cfa86d80f46ebdfe262f1f3b44586cb1c2fd7418 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] moved qt.conf install to the correct cmake file

9034a14eeb2d3276b35a8d683e0602c859053df0 authored almost 2 years ago by Samuel Wein <[email protected]>
minor

8bf3f8b6173e98d6367175878f8ebf9822796c72 authored almost 2 years ago by bielow <[email protected]>
differentiate between in32 and int64 in mzML

5203480630a89c9062f5918617cebee356adb8ad authored almost 2 years ago by bielow <[email protected]>
[fix] add permissions explicitly

a4206ad18d910a7d87babffe949fa06f50bf8f59 authored almost 2 years ago by Samuel Wein <[email protected]>
[fix] manually copy qt.conf

abb20cc0bb0dfb19031eb6f08ff60b7ce729f4bf authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6436 from axelwalter/feature/sirius-official-5.6.1

[Feature] SIRIUS 5.6.1 official release

63531b1fa6f73c491983aab255add18a9f43ebed authored almost 2 years ago by axelwalter <[email protected]>
Update TOPPViewBase.cpp

c6493c103dfdfa7cb0120b6e2191ed86a4871c36 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6426 from OpenMS/escape-underscores

Escape underscores and other special sphinx characters

0c63cf81338df0bfbc96c1296507836cc85fad74 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix

841724b2790ff9ae92805839334569d98cfb192e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/sirius-official-5.6.1

e20d74c51ca8875da81d684e1808b6c26424e3ca authored almost 2 years ago by axelwalter <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

0e543d98fa065195d353d2a1ac81fa71db4fb8f9 authored almost 2 years ago by KyowonJeong <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

3a1d195c868e5a315cc5ac557e69ccfe623cba0a authored almost 2 years ago by KyowonJeong <[email protected]>
Noise power calculation became a bit conservative. Max signal /10 intensity ones are considered

b4b16ce5bea2046808b3e6d0c3a2e2101074bead authored almost 2 years ago by KyowonJeong <[email protected]>
pass verbosity parameter down to tool discovery

06dbeac4999bf41ac548b988251d3631ed39e705 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
prepare toppview for debug (verbose) option

87cdaf1e691e06b886eb14758c06924540ca753c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Apply suggestions from code review

Co-authored-by: Chris Bielow <[email protected]>

9696a9eabb247a8d142dca5f66cd06e34e86f23f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] move qt.conf file creation into the DMG build

38a099fcd1876104a5219b5e21a3f2969e2b9e86 authored almost 2 years ago by Samuel Wein <[email protected]>
restrict number of spawned processes

8458e9219444df81fab457b89bcdb5edbdfa314b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[fix] add qt.conf for Mac

de65ac27c789577677992dbcf438888918c6ba00 authored almost 2 years ago by Samuel Wein <[email protected]>
First pass

db8abf89b08268d52b09a69f203e66d672f182fa authored almost 2 years ago by Samuel Wein <[email protected]>
DL scoring training implemented.

78605b62090c6606b21b07c0a52b70b1a85447e0 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge pull request #6445 from OpenMS/fix/MzTabSkipIDs

[FIX] Huge bug where empty IDs led to silent cancellation of export

91314f74662df9384e8d823657f776dcc75cc992 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] tests for mztab

f04c112ed67d4544229ff904bb99aebb28bb7a6a authored almost 2 years ago by jpfeuffer <[email protected]>
Merge pull request #6441 from OpenMS/jpfeuffer-patch-1

Update install-macs.doxygen

a8223f3dcee4135624ec56c2ad81f7183a32b1ad authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] Huge bug where empty IDs led to silent cancellation of export

d88a2414d0508799ce3d73af5bbee64d6b055f5b authored almost 2 years ago by jpfeuffer <[email protected]>
fix clang-tidy error

3b209be05e2605cd7885a4636dabbb8adbb848de authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/clang_performance

392b843c2797bc78f155dbf67b620d94929563c6 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

1af55a2162c87c6cf493d7d165b34bfbf8b5db92 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6442 from OpenMS/jpfeuffer-patch-4

[FIX] PLFQ mztab config bug

af09810aaa3d0e5bfe997719fd2bea5d2957b35f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
small clang tidy correction

4864b2b580d08133f8baf21f238ac03168b98225 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6435 from OpenMS/feature/tv_optional_tool_scan

Update TOPPView.cpp

99e0cbbe632dd00c21718e2cc7c7a0865b06377c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FIX] PLFQ mztab config bug

86902d09c1b6f2276b7484c4ab24f0436f9dc2c1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/clang_performance

a5f57b8bea465d06b8015d7e4a25dad3438aa022 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6425 from OpenMS/feature/clang_modernize

apply some clang-tidy fixes

8cccc06db5131147e32c3af7c110877283ff425b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
not sure what the default build style in contrib is only add when from brew

cd8f39900b6fc6ee007a4ea985a39b6afbf5ed97 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update install-macs.doxygen

d2f6f4910d68837da8c66406841f697d13deb9d4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/clang_modernize

a6ae00c8a991cff8e8b5d4201cc49181986ce14b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
ignore ssl in ctest

979e293cd381e933ce490cd05726c9a0ba065e9a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/clang_modernize

a805dd514b4138d4c14d16bb036bc70edbd88570 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
disable ssl check on upload of results

b5d55b59b89b0d50532d38a05fab7e9e3d4af37e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6439 from cbielow/fix_vs2019_version

move unused vars to OpenMS target only to prevent pyOpenMS build failing

dc59267284d5590498a7161e9cb5008d990a0473 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
move unused vars to OpenMS target only to prevent pyOpenMS build failing

7c6d9d54a3a85dc5f211e7098d51fe89e1bc7ef5 authored almost 2 years ago by bielow <[email protected]>
update sirius to 5.6.2

96a0e1134eeed82fd37946bdd48cac92e630f76e authored almost 2 years ago by axelwalter <[email protected]>
update sirius version in files

de1a772558d021013964fe2d228945360dab5847 authored almost 2 years ago by axelwalter <[email protected]>
update to sirius 5.6.1 official release

c60baf48e6d849af9de40a88b456fc198c687585 authored almost 2 years ago by axelwalter <[email protected]>
Update knime_package_support.cmake

b85f7c99abca0af0a231ee41bd84bf925e6ed9af authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update knime_package_support.cmake

80c210171a947d4b20719350a2a9ec6d9bfbcdef authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6438 from jpfeuffer/feat/betterKNIMEpkg

[FEATURE] better KNIME packaging. Ship redist on Win and strip on lnx/mac

52cea87daaa3e4f36a8d13978936a029ebf8f030 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update cmake/knime_package_support.cmake

Co-authored-by: Timo Sachsenberg <[email protected]>

1620799c5667e5d0624ba449483904a07caa9bb1 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
[FEATURE] better KNIME packaging. Ship redist on Win and strip on Lnx/mac

8c9a7fda4a377985d58ad7a8515e86a41ad3b26a authored almost 2 years ago by jpfeuffer <[email protected]>
some style corrections

f2e1c1e9074edf5dfee3cba4d8e32f2a7b945482 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into feature/clang_modernize

7a0370ea27ff1f3ec33f463d2d036e9448749078 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

8385ab205dd3176634b09de4d91d438e1f376cb0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

c311bf42f9655c86c1e5861a1dec30595fb23296 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update TOPPView.cpp

8124b5adbb024034974e7206ae2b1037ba2c66bf authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6430 from OpenMS/fix/plfq_idconflict

pLFQ keep only best scoring ID per consensus feature

1ef10686cb905e43fb7548f1b5f1332a07c92383 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
update tests

86e0abd5a57e41f84c81c2075726bfe9ba957e30 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
pLFQ keep only best scoring ID per consensus feature

fixes a regression

401f316dca70a329a14a00c89b100710de4af620 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
DL encoding added and AVG PPM error bug fixed (minus plus compensated before)

8a2a9044e50253960af63ab742b69d013be8eb05 authored almost 2 years ago by KyowonJeong <[email protected]>
Merge branch 'develop' into feature/clang_modernize

8c64e8968356d9e7fa5c2c89cc05199f945ee06f authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6268 from jcharkow/feature/OswImCalibOutput

[FEATURE] [FIX] Support for Ion Mobility OpenSwath Calibration

ac715864a0385985af1eedc02d361641f08a2006 authored almost 2 years ago by Hannes Roest <[email protected]>
Update Exception.cpp

e51c131ceb7e9e094bf7432a7f140c56296625d8 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[NOP] fix whitespaces

e6a85b8eb8fe6d37b47296dd3f2f092682d66824 authored almost 2 years ago by jcharkow <[email protected]>
Update Exception.cpp

f9f086080344a27b24d4520e5b1c38ed6243b414 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
make parameters const references if possible (according to clang-tidy)

a18eb8d78f90bdd51c9f11892f7589b718185adc authored almost 2 years ago by Timo Sachsenberg <[email protected]>
apply some clang-tidy fixes

40e6b194a6d0d66daa2736c67af7bd63e4d1a39d authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix

cd0e472a7d96ded6d24a937cc9793e887fe725f0 authored almost 2 years ago by rahul799 <[email protected]>
Merge pull request #6357 from axelwalter/fix/sirius-uncompressed-output

[Fix] SiriusAdapter adaptations to Sirius 5

e3e9db61d16cd352cf6aff8eae4cb976b813eee9 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into fix/sirius-uncompressed-output

5673dd8d68af53e9016e2223c6a36a41ca07f242 authored almost 2 years ago by axelwalter <[email protected]>
update test descriptions

82edb5295a4d1baeaec42fa2305e43c6f445214b authored almost 2 years ago by axelwalter <[email protected]>
modify whitlists

- remove whitlisting all masses and adducts in test 1 and 3
- add one mass for test 8

f5a4ad17d8723b55eadfc2e68088c6b63d36525a authored almost 2 years ago by axelwalter <[email protected]>
Add basic phosphorothioate ribos to Custom_RNA_modifications

d9f9a333a7da8ce76267f9d56b4db290a37fe751 authored almost 2 years ago by Samuel Wein <[email protected]>
remove explicit definition of thiol's from Modomics, update changelog

a3240bbd34f22a1c17a20ce8d741e774bbe54670 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge branch 'develop' into feature/new_thiols

bc2d7888470f4a2349cae7d51e06fb7b1dafe0c8 authored almost 2 years ago by Samuel Wein <[email protected]>
use apple CI test files as reference

b686199e0f0131fcc544ad0b48c21405297a17f5 authored almost 2 years ago by axelwalter <[email protected]>
pyoms docs

8b571fd367e72e41a3828e909df004855d71a856 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Pyopenms docs

9ac412c949bfa9d109ebbba7b77a85f62980d52f authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

d942fda3bb948236dda2dceaa6f51b0d20d0c5e9 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6139 from cbielow/refact_toppview

Refactoring TOPPView

573987ebdf832aa2a4dfffb1db3525dbc552f238 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
[DOC] small pyoms doc fixes

d58895066e65121e3afe873ad653ccb4105efa48 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6422 from cbielow/fix_vs2019_version

up the minimum required VS2019 version

a3ede1f44d0154553911e4118bce9b2ecc54139c authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6421 from jpfeuffer/upd/knimepkgplugins

restructure and fix knime packaging. mainly on macOS

3decf8a82974d0ad6b6141c901935489a65b948c authored almost 2 years ago by Samuel Wein <[email protected]>
update whitelists

0b7b34c3c7d71d6c2f9346b22c43d872d0102d1e authored almost 2 years ago by axelwalter <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

43cc55cf2cd4a16b454cb30f90db827f309d5676 authored almost 2 years ago by bielow <[email protected]>
fix warning (unused typedef)

6d04e20faa31f17708395261a412ef1ec976d911 authored almost 2 years ago by bielow <[email protected]>
whitelists for Ubuntu specific tests

9dfdd33f21830cb3e303c8e9464ee7af345d2fe4 authored almost 2 years ago by axelwalter <[email protected]>
up the minimum required VS2019 version

959c743e33ca98488658f830d06f4b4627b384c4 authored almost 2 years ago by bielow <[email protected]>
Merge branch 'refact_toppview' of https://github.com/cbielow/OpenMS into refact_toppview

8582a101cbae10da8cf5b866a85e6d4632cb31ef authored almost 2 years ago by bielow <[email protected]>
fix linker error

698c98c9828d23e4f47b17b87dc64d85f4362ef8 authored almost 2 years ago by bielow <[email protected]>