Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Update Uni-tuebingen pypi url

Update to the correct URL

b2d3656eb79fecd2b7ebcab9e63b8ceb7f2a1000 authored almost 2 years ago by Samuel Wein <[email protected]>
Changed for windows

560d8a7b9286f7d7556fc45a69217f04cd2d9855 authored almost 2 years ago by KyowonJeong <[email protected]>
Changed for windows

16f8558fad97f707715ed315074b9f78b8a7e32f authored almost 2 years ago by KyowonJeong <[email protected]>
Synced with FLASHDeconv branch

491609a88b2494c4bba663da03b2f0270a1be9b5 authored almost 2 years ago by KyowonJeong <[email protected]>
Removed all warnings and tested.

8e64503d74c1d759f4b4f40fa8ff31dba97d1aae authored almost 2 years ago by KyowonJeong <[email protected]>
Merge remote-tracking branch 'upstream/develop' into revert-6518-revert-5688-feature/FLASHDeconvOnly

d1891bb8c246d910812c897d704561b1d568962a authored almost 2 years ago by JeeH-K <[email protected]>
Merge pull request #6527 from OpenMS/fix/macdepscript

Fix/macdepscript

c6dd4f67dfcbd4db786b8064a6de548e7632cc4c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Nit

0f2960ea12b261b97e5d7983c811047c36518dcd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
fix the script again

d2d7ff93ee004df38b31e7c520780cc0bf6cb521 authored almost 2 years ago by Builder <[email protected]>
Update src/openms_gui/source/VISUAL/Plot2DCanvas.cpp

Co-authored-by: Timo Sachsenberg <[email protected]>

4ca9fb47edf569a8cb70a93482f8a678d3b8eed3 authored almost 2 years ago by Chris Bielow <[email protected]>
Merge pull request #6512 from OpenMS/jpfeuffer-patch-4

Try ninja on GHA Win

2db8e16deda1f2c1cff00ff52703e61e2c7f86de authored almost 2 years ago by Timo Sachsenberg <[email protected]>
forgot some files

7c5d45dd43c23c87afaa2bf0716124eb1a9443f3 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
apply fixes from https://github.com/OpenMS/OpenMS/pull/6522

a1d1084864056bcebf864a9368a8c051a6c15ee1 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Revert "Revert "FLASHDeconv (only)""

10b1bff776c7f2373348919b171317daa878fa88 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Changed more classes from DOCME to DOCME2

dce1cc9b0e34a10244e523bdf0cfc0028e6926ce authored almost 2 years ago by AmandaWein <[email protected]>
show intensity when mouse-hovering over a data point

89d60e9cdec35bcf29e9f0b59951253b78ae650e authored almost 2 years ago by bielow <[email protected]>
Merge pull request #6518 from OpenMS/revert-5688-feature/FLASHDeconvOnly

Revert "FLASHDeconv (only)"

39e2704019e554e21440a4ccca78b0ccc9c3a0fc authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Revert "FLASHDeconv (only)"

6886281b1cb2d3dec213d4804aa9a70ae745c6f7 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #5688 from JeeH-K/feature/FLASHDeconvOnly

FLASHDeconv (only)

c73839e0ddbe3df187d5ec2cd7a3f86d6c6a64ab authored almost 2 years ago by Samuel Wein <[email protected]>
bug fixing on test

5d0e89d9dff97126f3656bf5974bf0d985c4d336 authored almost 2 years ago by JeeH-K <[email protected]>
bug fixing tests

d141462a8744368afa67b15ea3ed3cfc5c582db2 authored almost 2 years ago by JeeH-K <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

62fc6271c6e7c6e70bf206fae8bb8edaeabbf729 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6517 from OpenMS/update_contrib

update contrib hash

5758fa72fb713d1b5e331ee84aafc657433363fa authored almost 2 years ago by Samuel Wein <[email protected]>
update contrib hash

f0bdc5acfee82198864f063c92f225e45318c542 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
fix plotting of precursor positions in 2D View

18ac15501f6a314ff27f0adb283100186bbcb03c authored almost 2 years ago by bielow <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/FLASHDeconvOnly

f13c4c41a668a9f4a917f97a40b24f08d83609f3 authored almost 2 years ago by JeeH-K <[email protected]>
PeakGroup_test.cpp bug fixed + FLASHDeconv charge off by n artifact removal added

9d1ed4bfc07824a4833a8a19b9c133ced4ac8c6f authored almost 2 years ago by KyowonJeong <[email protected]>
testing DOCME2 for some classes

38020597e94f89215dc6035ac00f7c7ffdeac643 authored almost 2 years ago by AmandaWein <[email protected]>
Update .github/workflows/openms-ci.yml

54a5c8984123bfe3fa9e07b5aff17c8322b4753b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6493 from AmandaWein/patch2

Changed precursorMassCorrector to accept negative charges.

7ab4dd86478ed6d85fb4519f6cc23c58489bd11d authored almost 2 years ago by Amanda Wein <[email protected]>
Merge pull request #6511 from OpenMS/timosachsenberg/boost-spirit-karma-6507

might fix karma issue

e7d08ce5a313e9cb0cac30f3d62117fe1bff4fb2 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
try limit concurrency

5984a3567b7ccef23c9235deefed835388d8a71c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6487 from jcharkow/fix/pasefCachedFiles

[FIX] cached file loading OpenSwathWorkflow

1d872ff64274745a81aefd11fa2d271ae8d9bf89 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
build flags probably not valid. ninja should multithread per default anyway

6e7c332adea01ffc95d99aa95442fc512baa985e authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6505 from OpenMS/cmake_fixes

use automoc only on openms libs, fix asan flag propagation

8e5678486751eecf346bb7b8f96dc5608177e53d authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6500 from OpenMS/jpfeuffer-patch-1

Try collecting GH job status to display overall status

e953dcb34f3fae357126ce9e7c56c255a28d2548 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Try ninja on GHA Win

9c87571650093820d4fa3477c3b0de2dda781707 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6510 from OpenMS/fix/installcmakedir

Use INSTALL_CMAKE_DIR variable

ecdb5064fdc1047eb331d26e9b0b325215e456bf authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Fix rest of messed up SqliteCPP

42d5f3d53bb5b01523bf19a60920dc91eb2802f2 authored almost 2 years ago by jpfeuffer <[email protected]>
Update AddressSanitizer.cmake

119fc2498a60a878f96b347476194aeaa0a32d52 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
enable address sanitizer at target level

1154de527e51767d6df9ac1bbe3483b2e5120034 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use automoc only on openms libs, fix asan flag propagation

1a5c4b7a2d406fa2c71cc07cc15450388025bcb1 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
might fix karma issue

9b6fce4ad026477fb0006d802beede7e512483b0 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Use INSTALL_CMAKE_DIR variable

367c0ac0db2e69dec6bcf7824c9e451daf29f1bd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Update openms-ci.yml

274cb714f098b5e6aa459741e29d6b84c42401ae authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/FLASHDeconvOnly

83e61aba3b37c8caf4c40a16d9437ff1a2d1c567 authored almost 2 years ago by JihyungKim <[email protected]>
Update openms-ci.yml

2fa6c6a57609283e0c60e45e890ab7a5f6279a7c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6494 from jpfeuffer/feat/pkgInstAndLessLatex

[FEATURE] Add pkg installer and faster, less latexy documentation.

467d5f94ecb348d2583c6aa40e73a183a0c529fd authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
FLASHDecon for OpenMS3.0 Sam's PR is reflected. Need speed up a bit + buf fix

2c8f58d3e127613b238a6aca541b4238baeb6ed0 authored almost 2 years ago by KyowonJeong <[email protected]>
FLASHDeconv Only for OpenMS3.0 Sam's PR is reflected.

f09d9642ce94bb347a7142dff556dbe409573c3c authored almost 2 years ago by KyowonJeong <[email protected]>
Merge branch 'develop' into feat/pkgInstAndLessLatex

11ca5454821f3750f2ddd2e71d28ce2dfbfb615c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix/pasefCachedFiles

4a51759397fd9e34ce2b4be0f95b726d94802f4b authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'fix/pasefCachedFiles' of github.com:jcharkow/OpenMS into fix/pasefCachedFiles

bf1e76b173d4ef3329de137cb398fb6ab406b492 authored almost 2 years ago by jcharkow <[email protected]>
[NOP] remove debug print statements

2472874910bc13b92444ade6569d38e1a4678d78 authored almost 2 years ago by jcharkow <[email protected]>
Update dockerdeploy.yml

Update login-action

e92616748a099f859b22d4041a198f173ab5a757 authored almost 2 years ago by Samuel Wein <[email protected]>
use different plugin install on win

447aaa9d6218a9c66a852aee2454835d4a16241a authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Only one bundle per RT_DEP possible.

033bd85b219f7cd2dea114e9926afddc02483540 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Add pkg installer and faster, less latexy documentation.

c24a6e28d5e4ae4b4f89ec5788aad6bf5fb7bda4 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Try collecting GH job status to display overall status

Alternative: Use different workflows.

d2451b3181727381aafb70c0bd199ca60901dc32 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6498 from OpenMS/fix_filesystem

exclude std::filesystem dependent functions

a0e4a0474c709ba845ac4e00d0181f61ce894147 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6471 from OpenMS/docstrings-fixed

Docstrings fixed

b10522613611822417a37c94c1e7d9a84878775c authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
exclude std::filesystem dependent functions

8126a7448c58b4cd267c83fc9c4592b4c5031329 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Update cibuild.cmake

12af1c9242a3473a4590313c8e3d746a3c631617 authored almost 2 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into patch2

e401b4bee5ec580443083800034ff40d3b2ed97a authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6495 from OpenMS/timosachsenberg-patch-1

remove sqlite from linux build instructions

45a1beedec33d99c6562958c3701114978e9818c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
forgot one sqlite occurance in contrib

ed5d002fba43d105844dd9d294f7dbeec656b755 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
remove sqlite from contrib and build instructions

d5a923d824225631aa6abb15835c57447e53e397 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
remove sqlite from linux build instructions

e377ef429ec86c7151870cbde852dada09205a65 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6491 from OpenMS/timosachsenberg/update-build-instructions-6490

remove wildmagic from contrib and update build instructions

a4a411c0af2939f48ce467fc2412440d7f7e7623 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Changed precursorMassCorrector to accept negative charges.

69b32c976127d13266a63aedf0e749f2df0fcf26 authored almost 2 years ago by AmandaWein <[email protected]>
Merge branch 'develop' into timosachsenberg/update-build-instructions-6490

87e9d81af7721ada249657c0f5eeca05bff17ff5 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #6478 from cbielow/fix_sql

Switch from QtSql to SQLiteCPP

b1c47681cad69b5e023e27e4a45f65cac59f1b2c authored almost 2 years ago by Timo Sachsenberg <[email protected]>
remove wildmagic from contrib

79a27f451be0f6e5bfe97cc7e6c4d5b5bf316f8e authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix_sql

f881e8eebcee1d288644d2e00aceead10e099b30 authored almost 2 years ago by Chris Bielow <[email protected]>
moved parseEntry_ to header

e480b048bca2e8b30a46226d93fc690343457992 authored almost 2 years ago by Samuel Wein <[email protected]>
Merge pull request #6486 from axelwalter/feature/sirius-5.6.3-snapshot

[Feature] Update to Sirius 5.6.3 snapshot

cbccabf43fb423a96b556265c2fb7da436e57890 authored almost 2 years ago by Samuel Wein <[email protected]>
remove exposure of private includes

8fafa1e88b2cc57129326e33519c4b5eb189492b authored almost 2 years ago by bielow <[email protected]>
Merge branch 'develop' into fix/pasefCachedFiles

e917908886c079a00f5638c518cf1dd774545bd6 authored almost 2 years ago by Joshua Charkow <[email protected]>
[FIX] cached file loading

OpenSwathWorkflow will not load cached files unless the
-split_file_input flag is specified. Thi...

d7fbf2680e5c0ac494c0560b9e94cbb00180ad44 authored almost 2 years ago by jcharkow <[email protected]>
do not export

dee432d1de9738231ec7df37a0edc1b22716f7eb authored almost 2 years ago by bielow <[email protected]>
remove unneccessary QCoreApp

6cd5dff7c0b83e40cb9d7b0cfd6aa7b63cf60e96 authored almost 2 years ago by bielow <[email protected]>
make SQLiteCPP private (i.e. internal to OpenMS lib)

d834492d4a26368b4676b5b74216c25f82e78d75 authored almost 2 years ago by bielow <[email protected]>
Merge branch 'fix_sql' of https://github.com/cbielow/OpenMS into fix_sql

# Conflicts:
# doc/doxygen/install/install-linux.doxygen

df5ad1af6ffd04adcb8202829ec6e4e0edae592b authored almost 2 years ago by bielow <[email protected]>
update docs to not require sqlite anymore

3cd9b71b0428124c590f1d98f18e30b8e4226119 authored almost 2 years ago by bielow <[email protected]>
undo qsql plugin requirements

597877e69c47b72100b3f10f24cedc5ab8d07c2b authored almost 2 years ago by bielow <[email protected]>
fix value of empty table cells in JSON (shoudl be "", not "NULL")

fc776adf7078d083c7e03c25c5d0cb453f07aef2 authored almost 2 years ago by bielow <[email protected]>
fix empty statements

402ec8502835f55157f456afe3ce0ff16748481c authored almost 2 years ago by bielow <[email protected]>
fixes some (potential) copies (#6485)

* fixes some (potential) copies

* Update src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.c...

4e0d18945199f7f4b7d463dcc547a8260fbccf24 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
update sirius version in files

268b5ed76a4980fcecfc6b5d807d219adb5e0e8a authored almost 2 years ago by axelwalter <[email protected]>
update thirdparty

2b54059abe197e57c3587868b04880bee32e8449 authored almost 2 years ago by axelwalter <[email protected]>
Merge branch 'develop' into feature/modomicsJSON

0b3fe24cd3869b6ec8b9a1cac4586cb7c09a2b89 authored almost 2 years ago by Samuel Wein <[email protected]>
added ambiguity mods. BROKEN

f56e1e6f2eb2425cbcc0156b86de6d70c0ba69a7 authored almost 2 years ago by Samuel Wein <[email protected]>
moved DNA's to Custom_RNA_modifications, fixed tests for updated DB

0e94e2bd22bc68e6f46490ed77e58ecda6983d9a authored almost 2 years ago by Samuel Wein <[email protected]>
updated JSON parsing

52e6fdd2c7a3fe164bc8fc5e3757aca8e755c98d authored almost 2 years ago by Samuel Wein <[email protected]>
prevent life-time issue by returning by value (#6481)

c5cf570efba89bd39dbed50b9480acba4163aac1 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix_sql

939100fb9959b49c857576f4d8f6bb69f7a7e214 authored almost 2 years ago by Timo Sachsenberg <[email protected]>
Fix clang ci (#6457)

* fix svm lib related bug

* update build instructions

5ceb2b2eed8fbfbfca7485a6cf80aeadfe2171fe authored almost 2 years ago by Timo Sachsenberg <[email protected]>
meta values of unassigned peptides were not exported properly (#6473)

* meta values of unassigned peptides were not exported properly

* removed debug code

* don...

94b932f6c7f2bf7870005cd90d03da5ec3e0a2fc authored almost 2 years ago by Timo Sachsenberg <[email protected]>
use PIMPL to avoid exposing dependency

8692e03358a46414aa85852624a11b5832effe58 authored almost 2 years ago by bielow <[email protected]>
remove useless includes

11c47f5b65dde008f88b11d068ff69f5a759ce02 authored almost 2 years ago by bielow <[email protected]>