Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Try dependabot automatic submodule updates (#6715)

9c36657a4a12cf5dc52913f08b1da8d85b60e83f authored over 1 year ago by Timo Sachsenberg <[email protected]>
update contrib (#6714)

ce0da1e141072bcbb1860ab315424c10cce97ea7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6671 from axelwalter/fix/gnpsexport-negative-mode

[Fix] GNPSExport negative mode issues

e727fc362f3e7b2ec17e825d2dfc00856130e0bd authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #6708 from cbielow/fix_doccmake

Fix Min Cmake version

4c4b0139d22985ddc3317cb21868068d7d23ba61 authored over 1 year ago by Chris Bielow <[email protected]>
split example from Note

58423720443f1288b5e0e7b17b0cbae17ddee503 authored over 1 year ago by Chris Bielow <[email protected]>
update Cmake version

e041fb6182b8cf5d801b9a07b1c224b0d50a8868 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6703 from cbielow/TV_fix_ctrlw

TOPPView: fix Ctrl-w and Ctrl-a not working and support recent dir for File->Open

2fec799ac03c12c72b162046d1d72aeaaf8916c1 authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into TV_fix_ctrlw

c2749f4262118d569da5675f5d53d37b306d08d3 authored over 1 year ago by Chris Bielow <[email protected]>
avoid passing '0' to openFileDialog. This enables the 'open recent path' feature again.

175900d4c48d0ca79802ffc9ddfa57c4d44e4da8 authored over 1 year ago by Chris Bielow <[email protected]>
remove useless code

bc7aa1047f830d7e4bdafd1ef82e69e813662adf authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6702 from cbielow/develop

update contrib for XERCES-ICU fix on Windows

1731019a6d1877f24c0839c27a0cf824bb354c57 authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into develop

8f28fe8b27cf496338a5e5bfb9913e7aea2b45a2 authored over 1 year ago by Chris Bielow <[email protected]>
FIX typo in knime properties

04c5d804816a5b34304f549eac5c23e5bba486bf authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Ctrl-B instead of Ctrl-A to avoid collision with "Annotate with Accurate Mass Search results" in main menu

a8c1c151c43c707387fc4038d572eb86813418dd authored over 1 year ago by Chris Bielow <[email protected]>
impl

1befd5c3ceab93beb50826f4f30f92ecfc24d715 authored over 1 year ago by Chris Bielow <[email protected]>
add new subwindow interface which does not introduce a system menu for the child

5f6e577e48a3b316435c97d48946cd5f8730f7ec authored over 1 year ago by Chris Bielow <[email protected]>
update contrib

9335d8b381890b4415fc26b7e3f996bbe52855f6 authored over 1 year ago by Chris Bielow <[email protected]>
[Feature] OMS file format read/write speedup, v2 (#6699)

Reimplementation of #6147 due to merge conflicts.

Merges the DataValue table into each _MetaI...

25ec4fc15b1fa80046f49dc9164fcdcbc3b9264f authored over 1 year ago by Eugen Netz <[email protected]>
also copy description and copyright to knime features

546c72020179d0113876818862376a8bc9a03241 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into feature/update-sirius-5.6.3

f2e866f920632d905ca3db81dc16ec420b74f044 authored over 1 year ago by axelwalter <[email protected]>
revert to sirius 5.6.3

4dc3c76107c3fb01c5f308d3202672b8375853ed authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #6694 from axelwalter/fix/pyopenms-assets-dont-copy-folders

[Fix] pyopenms assets don't copy folders

b28b5c37fc4d79f2ed6a23eee69e26f3b72c2692 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[FIX] fixed the use of a non-ASCII character, second case (#6695)

* [FIX] fixed the use of a non-ASCII character

Fixes an issue mentioned in #6676

Replaced ...

b6ddc738df7b344dc7f18786454779f9a9de72ec authored over 1 year ago by Eugen Netz <[email protected]>
pyopenms assets don't copy folders

3d7a28de476b1cd7302af423b83061f77045fc9e authored over 1 year ago by axelwalter <[email protected]>
update THIRDPARTY

7c82f94862edf3b457ba0f4f75b5c9518f90ef1c authored over 1 year ago by axelwalter <[email protected]>
Merge pull request #6692 from poshul/fix/thiolmasses

Fix/thiolmasses

370c73241d0daa2ea891762cee4cce2a5a1de683 authored over 1 year ago by Samuel Wein <[email protected]>
[noop] remove debugging

ef4b8773b1c18b2e0630519f2a1d486cd84dba97 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fixed extra H

b7c102ea9d98c58d0679f74d11dce755d551eb78 authored over 1 year ago by Samuel Wein <[email protected]>
[nop] fix whitespace

e79a9a63bf53cc39bb5b28b36b1eb2989f4de195 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fix

e036852b33dd9099040d9c297a727f9f46b7c749 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] more fixing

9ff9cfcb308134b94a745cf25383f885170ebec4 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] fixed issue with w and x ion masses for thiols

67b1494e98e7da3f3f032ba986413de8be0aaf59 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6689 from enetz/fix/xquest_nonascii

[FIX] fixed the use of a non-ASCII character, mentioned in #6676

1dc6178fd167ec037724d27526d6243252c1b07b authored over 1 year ago by Eugen Netz <[email protected]>
[FIX] fixed the use of a non-ASCII character, mentioned in #6676

Fixes an issue mentioned in #6676

Replaced the use of a non-ASCII character in XQuestResultXMLH...

e4c2fef313b1fac466fdcd292ec3792cacd6853b authored over 1 year ago by enetz <[email protected]>
Merge branch 'develop' into feature/update-sirius-5.6.3

6c33e6ba09dbfdaa3d92be7370d17323bb41828f authored over 1 year ago by axelwalter <[email protected]>
Fix/topp view ms2 only (#6646)

* [fix] fix LayerDataBase assignment of non-MS1 spectra with no chromatogram

* [fix] better h...

b0b01eb27377a60dcae7905b1f8dd61d96df3aec authored over 1 year ago by Samuel Wein <[email protected]>
update test files

fc7947eb99b9b517b1857d4a1549cd3bcfc159e3 authored over 1 year ago by axelwalter <[email protected]>
update to sirius 5.6.4-snapshot

7facc7e35627b528c986b4b3d9a78359aeb5b402 authored over 1 year ago by axelwalter <[email protected]>
use MacOS CI test file results

fe56bd8b6f34ffad032bb59888b549c9a52d39c7 authored over 1 year ago by axelwalter <[email protected]>
update SiriusAdapter test files

291f069393acc76c0bc6e7853350af68922992c0 authored over 1 year ago by axelwalter <[email protected]>
Improves the design of IdentificationData a bit (#6682)

* first attempt to remove some of the dependencies

* dependency injection of filter code

*...

3dc94c3b1acf0ac9919a375b4d31abf97e240fd2 authored over 1 year ago by Timo Sachsenberg <[email protected]>
remove SiriusAdapter test 8 and 9 masses from whitelist

5d369a58448ddac005d5e7f15a08ac08991a5770 authored over 1 year ago by axelwalter <[email protected]>
make hdf5 optional (#6677)

* make HDF5 optional

* also in source files

* Update sources.cmake

* add generator expr...

00171d3ba5b433920c3fa53ae377af2343c71f1a authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into fix/gnpsexport-negative-mode

9b26a767ccaf4a1ae42e4b8df50c31ce5f440fcc authored over 1 year ago by Timo Sachsenberg <[email protected]>
fix #6638 and not opening a 1D view (#6684)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

b87b35e9d87f4fc9255217911b8662bd7727a1a0 authored over 1 year ago by Chris Bielow <[email protected]>
and _in suffix in runTOPPTool_ (#6683)

8d8ad4ab1539d1427cc4caa93d5392b81e6e6acf authored over 1 year ago by Timo Sachsenberg <[email protected]>
[FIX] knime compression with cmake

e38a7a2e4fb095a666de0a3b12c7215a60671e62 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
update thirdparty with sirius 5.6.3

7c1e5768c7622cb1ff30f1ce81334fd5c566401d authored over 1 year ago by axelwalter <[email protected]>
TOPPView: fix selection and name of chromatograms (#6673)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

293755fd96d2f8da2c9abb988472282566ae82b2 authored over 1 year ago by Chris Bielow <[email protected]>
[FIX] Variable order in knime packaging

2342b8dc29c72ff55654519abb096de20e998bfb authored over 1 year ago by Julianus Pfeuffer <[email protected]>
use "de.openms" as knime plugin ID to be backwards-compatible

12987bb2b47f28bca6215c3bff3e33ecea300dc8 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
annote negative charges in gnps mgf file

111ef8ff9099896bb9b91cc26b7f8d4e1fbc2637 authored over 1 year ago by axelwalter <[email protected]>
[FIX] All Zero MS1 Feature Scores (#6664)

* [FIX] empty MS1 Feature Scores

* [FIX] Remove unnecessary brackets

13b285e97ab7aeb32aeb297a72096b480e2a140d authored over 1 year ago by Justin Sing <[email protected]>
Merge pull request #6662 from poshul/fix/DPHD_fix

[fix] added missing includes

be2814f4cb9cb0d69641537166f9cc8b9ec9b450 authored over 1 year ago by Samuel Wein <[email protected]>
[fix] added missing includes

3de724127d083b7f8133f5b41a248419161a5a03 authored over 1 year ago by Samuel Wein <[email protected]>
No prebuilds until we decide what to do with gitpod

2c846986462a47157cbd3cc93d9fad80fc6c3f96 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6660 from matteopilz/develop

[Fix] pyOpenMS Plotting Documentation Errors & Warnings

427e582860006be06b1e86652cc4c9a352df9f97 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
adapted function docstrings to sphinx format

1ea7504835bfe20e42e555ec774249bcf21aab08 authored over 1 year ago by matteopilz <[email protected]>
Merge remote-tracking branch 'matteo/develop' into develop

911edec445e11088129e2e84849717bf9e34210a authored over 1 year ago by matteopilz <[email protected]>
adapted function docstrings to sphinx format

827c96b8281982caba4bef67231c9522f4db7875 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

f90005f999ff0ab0e09eb379178b8d418d2c3d6b authored over 1 year ago by Matteo Pilz <[email protected]>
testing module docstring

beab4d43500a26ff55f4488a25e19c45ae33cda2 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

ccaf3827471e9bd395d33f9a1c8c4bf8338fb318 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6466 from AmandaWein/patch1

Updated DefaultParamHandlerDocumenter.cpp

599a0832fec1d5a421624cebaf05b73cb2027763 authored over 1 year ago by Samuel Wein <[email protected]>
IDMapper feature maps compare absolute charges

b5253c9fbe08cbc28d3025ea8887f180f255af87 authored over 1 year ago by axelwalter <[email protected]>
Output FAIMS information in FileInfo (#6640)

* Add files via upload

* output FAIMS CVs in FileInfo

* add FAIMS output test

* only ou...

828ef952d2f2281ebd4a85b19a4a57c6f5339bc4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
return mutable peptide sequence (#6644)

613f34359d8ccfc1a4669c3fbfdccfec4a9e4d34 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fix TOPPView 1d store bug and some warnings (#6641)

* fix deprecation warning

* fix bug which leads to segfault when storing visible 1D spectra/c...

a1213b93fa646e71d260771d78b7f918587dd60e authored over 1 year ago by Chris Bielow <[email protected]>
testing module docstring

c49123015861ad5e1383446e995b31e2426b94fa authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

9f9217adc33c139566d8f058f8174da0732873c9 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6645 from OpenMS/revert-6615-jpfeuffer-patch-1

Revert "fixes #6614"

7531454cd5255de98dd5c5e0ad4d42fc7662aa35 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Revert "fixes #6614"

53824c4c66748448bfd76267d16d3332b91a5c2a authored over 1 year ago by Samuel Wein <[email protected]>
testing module docstring

274f7c3d8f4fa49d6943616c7ead42d2b11cc015 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

e568feed73182677ac8850e14b6dc6cbc909faa4 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6632 from cbielow/fix_doubleparam

Fix duplicated parameters

6fe12cf05b207e53ec5c0bcb912b7809bfa16612 authored over 1 year ago by Chris Bielow <[email protected]>
Merge remote-tracking branch 'matteo/develop' into develop

dbedf4ef1b13a43ce7f98efe05522beffb44ca03 authored over 1 year ago by matteopilz <[email protected]>
testing module docstring

7d63fbbfddb437cb74320f702b279a0ebfeef931 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

e04ccc95e7fa217d51ac00b6d05149290222cc05 authored over 1 year ago by Matteo Pilz <[email protected]>
Merge pull request #6615 from OpenMS/jpfeuffer-patch-1

fixes #6614

48bd8eb1428c5f0a0a88ffe96f105f0087a3930c authored over 1 year ago by Samuel Wein <[email protected]>
Apply suggestions from code review

Co-authored-by: Julianus Pfeuffer <[email protected]>

f4b6654ce9cc4688024b3596136b983a5b8b784e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' of https://github.com/matteopilz/OpenMS into develop

c5f070cb715eac78db4b5e9f08e2fba240700dc9 authored over 1 year ago by matteopilz <[email protected]>
Merge branch 'OpenMS:develop' into develop

78f4f755d546a7d30c18b8f652e9fac470068a28 authored over 1 year ago by Matteo Pilz <[email protected]>
testing module docstring

2d49f49ac11b41df275fb106ed27f28849a18d86 authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6635 from jpfeuffer/feat/splitKNIMEpkg

[KNIME] Split KNIME plugins into TOPP, lib and thirdparty

aa37d393474379a47774537f1b0435285936a62d authored over 1 year ago by Samuel Wein <[email protected]>
testing module docstring

c836865e990662affeba1d2e635584deed78756e authored over 1 year ago by matteopilz <[email protected]>
Merge pull request #6627 from OpenMS/fix/wininstAllUserNoDocs

[FIX] WinInstaller Default Alluser and no docs

979fa3bcdf5c62e8c03a3d5965c07706b648cefe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' into fix_doubleparam

455f0963245e64250c227493906950e85525522b authored over 1 year ago by Chris Bielow <[email protected]>
fix test

05892d354bfad5332a2854c9a62b597dbba99dee authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6634 from OpenMS/timosachsenberg/file-download-broken-6633

use http in test

91f0d45b759bd2ce2ea2bc5982af6dea11f8f815 authored over 1 year ago by Chris Bielow <[email protected]>
small fix and comments

fd26556d3130e64844ebfd7d7f887d878e6cba36 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
rewording

a8304ca9753e25bb89d36766a6724e0a47fcf8ad authored over 1 year ago by Julianus Pfeuffer <[email protected]>
First working version of the split

41b87142968b19293b9a7903b6893807e7323cb1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
switch to http (because SSL might not be compiled into qt)

ff77847c1390b6885e4a5e553cdc1a40b31bb43b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6630 from OpenMS/fix_cibuild_exit_code

Update cibuild.cmake

b5044cdda21bc01a78a46ad2c4e7e21ccf32e510 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update citest.cmake

89d6df70cc2723e2456588cbdd925079545eadb7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
remove duplicated flag

7e2822c9393be29649658ac8c39c7117caa8c941 authored over 1 year ago by Chris Bielow <[email protected]>
remove duplicated flag/option 'post_processing_tdc'

a9f7f0cfb11947cbac5ef55e1d98051a5087b6b0 authored over 1 year ago by Chris Bielow <[email protected]>
modernize a bit

3b614c7522ed89f7196f4f64dbb5c4ac0b6d1cec authored over 1 year ago by Chris Bielow <[email protected]>
remove duplicate parameter from FFMetabo

d4a0c7e338a3c328abdfaf172fece19c1b3a4ab0 authored over 1 year ago by Chris Bielow <[email protected]>
format

d14c62667cac19c48bedd19259f65c3e0c994331 authored over 1 year ago by Chris Bielow <[email protected]>