github.com/OpenMS/OpenMS commits | Ecosyste.ms: OpenCollective

[FIX] mark static methods

542fbc7f254d2fd3f537907a66eafafe768888d4 authored about 6 years ago by Hannes Roest <[email protected]>

debug statement

a31485e7bd4c679714c3c472d5cff3551d9ea29f authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] fix pxd generation script

97264774c59a322988b9641f24dd0f6b5b32c390 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] always output PXD files (even if class already exists)

7549062519ea579dfff207309c11b20c4c57cf11 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] skip const member vars

0fb14d7de6d80b54c876cf325a7a86cab81946a8 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] cannot wrap const member

ea1494946054886503d7b9ede06f5e549c7d18f4 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] assignment operator was deleted

- [FIX] provide previously deleted copy-assignment operator

c9152da47095f00a98773e6d5dd9965ea1992647 authored about 6 years ago by Hannes Roest <[email protected]>

[PYOPENMS] fix

ae3208f5a7660a5d2db7b535220103596a269528 authored about 6 years ago by Hannes Roest <[email protected]>

[fix] Fixed (hopefully) implementation of hash_value for String

d8e5300d2f6a96729c4d1021df303e4706c876cd authored about 6 years ago by poshul <[email protected]>

[ADD] switch to canonical path

d6f7f53fc0ac540df20ca83593d1e896ba2c40ff authored about 6 years ago by oliveralka <[email protected]>

[fix] implemented hash_value for OpenMS::String

4d5ac28748b14b799975789b176a31b0e667a19b authored about 6 years ago by poshul <[email protected]>

[fix] explicitly include Openms::String to RNaseDigestion.cpp

baaf184c189d2e8ab6b7ceeca69c32c8dc11c9df authored about 6 years ago by poshul <[email protected]>

Rename the IsoSpec.cpp/.h files to IsoSpecWrapper.cpp/.h to match the name of classes inside

835c908f1136f5d2ce298f629ad727e49b2f48c6 authored about 6 years ago by michalsta <[email protected]>

Rename IsoSpec class to IsoSpecWrapper to avoid name clashes with IsoSpec namespace

00b6bdcb80f4ab3bc1fca3fcf2e472baccf2bac7 authored about 6 years ago by michalsta <[email protected]>

Bring IsoSpec implementation up to d41e5f89924d12518e0c96904baa88edac37c667

c03bba1c8120ab472f1c48a223099e4813e2ddea authored about 6 years ago by michalsta <[email protected]>

Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

ab503fdada447585bf47bea5683651b0a78c3e94 authored about 6 years ago by michalsta <[email protected]>

Reenable C100 tests

05240d15ed1fdcf798c52d939977da95c8312b7c authored about 6 years ago by michalsta <[email protected]>

Update TransformationDescription.pxd

794740d82f4c0fa9600d2d3f5eda21012ccb6616 authored about 6 years ago by Timo Sachsenberg <[email protected]>

Update TransformationDescription.pxd

42c662bcccfb3b10e1aba2d1a601bee38e8fce44 authored about 6 years ago by Timo Sachsenberg <[email protected]>

Update CONTRIBUTING.md

57c6e378a0e7e7a6d121064182afe3c270632763 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] Change WARN to INFO

25de450553c2530395227c188fb1ac466065d8ad authored about 6 years ago by oliveralka <[email protected]>

[FEATURE] return transformation statistics

7851683adf86a57a9c8547039aa9cb5792691782 authored about 6 years ago by timosachsenberg <[email protected]>

[FIX] typo

[ADD] self-assignment test

c07ac914cc347313f5894299b7a7dd09e386c3ec authored about 6 years ago by oliveralka <[email protected]>

[TEST] again more work on IdentificationData class test (work in progress)

c7c2f6f8abbccffb9b325396603bc4b50ff7a518 authored about 6 years ago by Hendrik Weisser <[email protected]>

[DOC] added documentation for class 'IdentificationData' (work in progress)

59c0d1305567e6c92497f369de673adcb8d25f9e authored about 6 years ago by Hendrik Weisser <[email protected]>

[ADD] handle copy_status

5b911935faecdb260ba98fd63a54cbe974e20c25 authored about 6 years ago by oliveralka <[email protected]>

[REFACTOR] Move copyDirRecursively to File.h

[FIX] style
[ADD] mkpath if targetDir is not available

add5ce1f56172c3b88e86b6636898d0ff9cb3006 authored about 6 years ago by oliveralka <[email protected]>

Merge pull request #3788 from hroest/isotope_dist

Isotope dist

1fa280537cff72343e72648ae887fd0ba0c0722e authored about 6 years ago by Timo Sachsenberg <[email protected]>

[PYOPENMS] add bindings, tests

82dd486a0d5874e4c27433ab83b2883061a099cb authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] style, test

87814635624bc1c6ceddb29e476795f0fddeab18 authored about 6 years ago by Hannes Roest <[email protected]>

[PYOPENMS] fix

881a6333e1212628e3847a4b338243200184dc20 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX,TEST] various fixes and tests

ff4d0625e045945f46a91bba6cac1c867a849b49 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] fix for general case

d09dba96a8a0ef2776d1b192873d9e84e8528dce authored about 6 years ago by Hannes Roest <[email protected]>

Trying to package all non-system dependencies in KNIME plugin to avoid additional installations.

9caa572672d5fc59049f05dea432b9b50578a50c authored about 6 years ago by jpfeuffer <[email protected]>

[FIX] copy directory recursively (sirius_workspace)

34ddb11eb8ccaa0650d9569fd4ab8cc799c3955d authored about 6 years ago by oliveralka <[email protected]>

[FEATURE] add json library as third-party include

usage:
using json = nlohmann::json;
json jtest = "test string"
std::cout << jtest;

a3d598f3201d19476847ce75dab4145fb8ea1987 authored about 6 years ago by Chris Bielow <[email protected]>

Updated contrib to head of master.

62c86606ced6a9c8d0774746a9aa5d2f03c744ea authored about 6 years ago by Julianus Pfeuffer <[email protected]>

Merge pull request #3783 from hroest/fix/bugfix_subisotope

[TEST] Fix/bugfix subisotope

99dc47c8730c28d908245297d6ef20df3d4c9fad authored about 6 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #3779 from cbielow/feat_spectype

enable type query for an MSSpectrum

6f40bcba1f781d51103dc1999db483da37ed02f7 authored about 6 years ago by Timo Sachsenberg <[email protected]>

removed occurences of manual peak type estimation

1debe078d8bcdc1ef4e3353c190a79c0d180aaa1 authored about 6 years ago by Chris Bielow <[email protected]>

[BUGFIX] store a copy in visited

- currently a ptr to the *current* configuration was stored in "visited"
which meant the *same...

b0961249a0e0b2e9cc5779f7113f1da1c5024fcd authored about 6 years ago by Hannes Roest <[email protected]>

Merge pull request #1 from hroest/isospec_2

Isospec 2

b917ae0063c945c826d13c0c039fd1fc8f2e8da5 authored about 6 years ago by michalsta <[email protected]>

Merge branch 'develop' into isospec_2

f2c5a217fbde9c2a107cc4b185b80efd47330d33 authored about 6 years ago by michalsta <[email protected]>

[FIX] Fix issue mentioned in comment https://github.com/OpenMS/OpenMS/pull/3780#discussion_r223198483

ab8b6133ab02551d02325f5498c03402d24fc6f9 authored about 6 years ago by michalsta <[email protected]>

[TEST] fix test

8fbff37e971d77c4dbe2c70b25471430ba5cda60 authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] fix memleak

2435637c2ab00e6e9dbfdf541e224ef8028224e7 authored about 6 years ago by Hannes Roest <[email protected]>

Pull a bugfix from main IsoSpec repo

731f12490545d041694274bee7a3c1c8e7274803 authored about 6 years ago by michalsta <[email protected]>

Avoid some memory copies by having IsoSpec generate right into a vector<Peak1D>

2585ed007eee96bb84461488940dcd19cae059af authored about 6 years ago by michalsta <[email protected]>

Merge pull request #3772 from timosachsenberg/feature/MSstats_file

[REFACTOR] move MSstatsFile to separate class

118d1a7f0757330bdb632ebf0c6d518268606d0d authored about 6 years ago by Timo Sachsenberg <[email protected]>

[fix] converted a!=b to !(a==b) because Boost doesnt have inequality defined for variant

5b72555e16e845c4db8a3fff09f2160e020c7cfc authored about 6 years ago by poshul <[email protected]>

Merge pull request #3770 from OpenMS/doc/ASan

document why a copy is created

c73188b125817790e0a3e022122a8e3f374c9ed4 authored about 6 years ago by Hannes Roest <[email protected]>

Update MSstatsFile.pxd

e69b18c858c321b79b97402e2f55613c144a82e6 authored about 6 years ago by Hannes Roest <[email protected]>

[fix] Added explicit equality operators to QueryMatchGroup

48ee8f01982dc254152fded0f30a1467bae44062 authored about 6 years ago by poshul <[email protected]>

Merge pull request #3778 from OpenMS/isospec

[FIX] memleaks

d442733b2fb879beac532876785630df33b2fc16 authored about 6 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #3775 from timosachsenberg/fix/FFid_ms_ref

[FIX] annotate spectra_data (link to mzML file) in FFid

f369f89769a9049e1608a1ec66ce03bc960e7509 authored about 6 years ago by Timo Sachsenberg <[email protected]>

[nop] fixed whitespace in ModifiedNASequenceGenerator_test added (but left commented out) tests to IdentificationDataConverter_test

d619ea6246f77939c250ebcd19b65917e5bfa301 authored about 6 years ago by poshul <[email protected]>

[Fix] removed dead code from TOPPViewBase, modified copy constructor for IdentificationData

134f6afb45191aaf5b58f0a40884d1dccd256cae authored about 6 years ago by poshul <[email protected]>

Merge pull request #3777 from cbielow/fix_linkerror

[DOC] use x64 link flags for Win64 builds

20453edd44a6bba1580b22f0760e159bd8781dd3 authored about 6 years ago by Chris Bielow <[email protected]>

[DOC, PERF] documentation and minor performance improvements for Deisotoper

9e1ff8532108e31feb73c12d7c55117037679f8c authored about 6 years ago by Chris Bielow <[email protected]>

[FEATURE] enable type query for an MSSpectrum

4b563e31f5a5e10982ddcc359634b3baf9580710 authored about 6 years ago by Chris Bielow <[email protected]>

[FIX] memleaks

53b8c7e3262e8fd8b510bb09b395c4708da84436 authored about 6 years ago by Hannes Roest <[email protected]>

[INTERNAL] rewrite loop over multiple containers

0bef9425612e7d2b5d3ba3ea5c9e1ceeaae20a49 authored about 6 years ago by lars20070 <[email protected]>

[DOC] use x64 link flags for Win64 builds to avoid linker error "LNK1210: exceeded internal ILK size limit; link with /INCREMNTAL:NO" (usually only during repeated incremental links during development)

bed5411cc04213cd241f66428bf9e23b686e2ca1 authored about 6 years ago by Chris Bielow <[email protected]>

Merge pull request #3773 from cbielow/DeconvRename

Rename RNPXLDeisotoper to Deisotoper

81f37959f1d427b4f8f7c9559a463dda3506bae5 authored about 6 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] rewrite loop over multiple containers

edf504eada560f5b10826e88d9a7ef11fa552eea authored about 6 years ago by lars20070 <[email protected]>

Added thirdparty dependencies as alternatives.

2cd992627b024e4c53165833816812c39d120ff6 authored about 6 years ago by jpfeuffer <[email protected]>

[FIX] write out spectra data and update tests

404aa34c70d07fb9094b517c0debd73eda316272 authored about 6 years ago by timosachsenberg <[email protected]>

[FIX] annotate MS run in FFid

c7c67962c1e670f7d1cc091edaa0ce530267fdac authored about 6 years ago by timosachsenberg <[email protected]>

fix

dd94289ef042da02f8ef951065c809de77d581fc authored about 6 years ago by Chris Bielow <[email protected]>

[INTERNAL] make use of auto loops

d4472080728cb864068292f27eadc5ccc6bac0f1 authored about 6 years ago by lars20070 <[email protected]>

[INTERNAL] copy existing peak

5cb4eb51b14e5e789fb4e990265bfe2aa02d8066 authored about 6 years ago by lars20070 <[email protected]>

minor code restructuring

94b72c1de3f286588875ce5548df33f10aee1172 authored about 6 years ago by Chris Bielow <[email protected]>

Update MSstatsFile.pxd

114386ad1e3354c114dcb4b4322edc61ddc1930b authored about 6 years ago by Timo Sachsenberg <[email protected]>

Merge pull request #3766 from OpenMS/isospec

Isospec

37c74d2f2bc5cb707216a7f860dfa690233ca356 authored about 6 years ago by Timo Sachsenberg <[email protected]>

[FIX] memory leak

bcafd184e542ddeb12ae14778813bb5165bc3e43 authored about 6 years ago by Hannes Roest <[email protected]>

[TEST] stresstest

f468277ae4542a5e68d2d702c0ca30e333c69f55 authored about 6 years ago by Hannes Roest <[email protected]>

cleanup

7401fce53056b1b402322b661f0b74be8a53282f authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] performance fix

65670fd1ec3240bff0efe78ada957d58e856b48e authored about 6 years ago by Hannes Roest <[email protected]>

[FIX] performance optimizations

838a52ec418d53372419f3503cd342ad47a3fab9 authored about 6 years ago by Hannes Roest <[email protected]>

[TEST] stress test

3312f85ba1276655636440a91e91ded7a1e2e72d authored about 6 years ago by Hannes Roest <[email protected]>

[TEST] stress test

ef8b18c48da1b0eaf753f44905e93309cf171420 authored about 6 years ago by Hannes Roest <[email protected]>

[TEST] test fix

7c5fed943a98bd110a83c9c8fda49dccc7d95b65 authored about 6 years ago by Hannes Roest <[email protected]>

Update MSstatsFile.pxd

36cb28dc6c83f4026b910ee530f407a48f962431 authored about 6 years ago by Hannes Roest <[email protected]>

Merge branch 'isospec' of github.com:OpenMS/OpenMS into isospec

d4bc64f2c1869e59a7065ecc701a816443b1ccc0 authored about 6 years ago by Hannes Roest <[email protected]>

[TEST] test against sorted data

f0a451a350d06c7c2cf42d02dbd8e3ee2fd651a2 authored about 6 years ago by Hannes Roest <[email protected]>

Update MSstatsFile.pxd

f9120735ac8cb22212d885bf743770911c435267 authored about 6 years ago by Timo Sachsenberg <[email protected]>

[DOC] docu, test

3fbc539ca49c003399ea0f2d3a9213f0ce5e2741 authored about 6 years ago by Hannes Roest <[email protected]>

[Fix] de-shadowed member variables in MolecularQueryMatch

45f5c668098f6ff139d87eb84ced0e2a1049157b authored about 6 years ago by poshul <[email protected]>

[REFACTOR] move MSstatsFile to separate class

051149fa2f987c871d2624bc6e9bbf80aa1f79cc authored about 6 years ago by timosachsenberg <[email protected]>

[FIX] Rework of debian packaging

8efb50d13be9ab53d5b0e95a2507244e48794f04 authored about 6 years ago by jpfeuffer <[email protected]>

style fix

aa9fa361454db49e6a3b8bde31d4242c6c3520f8 authored about 6 years ago by Timo Sachsenberg <[email protected]>

[INTERNAL] make use of auto loops

d62aa4d30ea082323b246ec34016598006172b11 authored about 6 years ago by lars20070 <[email protected]>

[FIX/TEST] Make stopwatch test more loose to avoid random failures (#3771)

0e7e156c1e7c66e5d4720557570e0581fd362f10 authored about 6 years ago by jpfeuffer <[email protected]>

[INTERNAL] reserve memory

be9b942d97c3886f9947a7b0190535f26de02435 authored about 6 years ago by lars20070 <[email protected]>

[INTERNAL] fix end condition in iterator loops

f4ab3ccbd5f358c9d6957c7c3e9cb76341720922 authored about 6 years ago by lars20070 <[email protected]>

[API] pass be reference

1717a012bea44d5b23ab8df1e8f818548b9f6976 authored about 6 years ago by lars20070 <[email protected]>

[RENAME] RNPXLDeisotoper to Deisotoper

e4796b455c262be340a3539c8a77b2c9c793166f authored about 6 years ago by Chris Bielow <[email protected]>

mass trace test parameter testing

6f009863e410f8e04589ed1e1e469a2180f9eb33 authored about 6 years ago by kyowonjeong <[email protected]>

variable scope warning

31371a05b035c7f190650fcd49a1ccbec823371a authored about 6 years ago by Timo Sachsenberg <[email protected]>

document why a copy is created

5b7e07dd37f2df9ca44eabe5854ad57183378f79 authored about 6 years ago by Timo Sachsenberg <[email protected]>