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An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

Merge pull request #6883 from JeeH-K/FLASHDeconvFix

[Fix] bug fixing on FLASHDeconv

9464bc169aa9b105cbe054810d8018576f3680a0 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6917 from OpenMS/timosachsenberg-patch-1

remove unicode character from description in MSFraggerAdapter.cpp

b31e9f0eca079df806c193ff19b110b9a488e776 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MSFraggerAdapter.cpp

9071a64bb3978190d72a6cf7e68eb3253a9035d9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into FLASHDeconvFix

7cc744177fb8d61da41bbb0f0c59394476ee8044 authored over 1 year ago by JihyungKim <[email protected]>
A few minor bugs fixed. And functions have been refactored. A bit of documentation added + one possible bug with static varialbe fixed...

6ca7d144d62ebf2c639f552c64a3fc9e67f06345 authored over 1 year ago by KyowonJeong <[email protected]>
A few minor bugs fixed. And functions have been refactored. A bit of documentation added.

53375234c0b6a302a8a19a09f2dbbe96aac535f5 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6916 from OpenMS/fixMRMfloatingpt

Update MRMTransitionGroupPicker.h

ec2ff8e81b50152c21eecf8402dd199ed338041f authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge pull request #6914 from OpenMS/fix_floatingpoint_IsobaricQuant

Update IsobaricQuantifier.cpp

fb8a216e51bfd55beeb0c3d42fd9dd070460ec4e authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge branch 'develop' into release/3.0.0

1b75c29fc4d528dd08a69b7d5b7e57d62145764b authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MS3TMT10Plex_test.consensusXML

b8be45da410c5703ff00c707678a979b6c3ae7c9 authored over 1 year ago by Samuel Wein <[email protected]>
Update TMTTenPlexMethod_test.consensusXML

40bd0ecf5ee9fc74d089bbcf0f6f93bde391334a authored over 1 year ago by Samuel Wein <[email protected]>
Update MS3TMT10Plex_test.consensusXML

Update test

3c4b51376f8426192bc7dd7089a25e8738237541 authored over 1 year ago by Samuel Wein <[email protected]>
Update MRMTransitionGroupPicker.h

Accumulate should start from 0.0

6cff3e0a162850c9673de54e57c1bf85c3b3a96f authored over 1 year ago by Samuel Wein <[email protected]>
Update MRMTransitionGroupPicker.h

Fixed unintended consequences of cat-keyboard interaction

bdb6dd479594169c6e7dfd75ceb481144cb7d56f authored over 1 year ago by Samuel Wein <[email protected]>
Update src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h

cb6b36446c735899631d33d1f7629522cd3049c4 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update MRMTransitionGroupPicker.h

Fixes issues where behavior diverges between architectures due to floating poin weirdness

715c6b9133a547b683f1764f445e2fbc11922439 authored over 1 year ago by Samuel Wein <[email protected]>
Update IsobaricQuantifier.cpp

Set intensity < 1e-11 to count channel as empty

eb70ab98bc2c23ef2bfba24fe96236dbd04ac4b5 authored over 1 year ago by Samuel Wein <[email protected]>
Merge pull request #6912 from OpenMS/dependabot/submodules/src/pyOpenMS/pyopenms-docs-577aca4

Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `577aca4`

47474d164bf4425c0c567d35df9daa81ebfa20be authored over 1 year ago by Timo Sachsenberg <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `8c1f161` to `577aca4`

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `8c1f161` to `5...

31713c6e820eda6cd5d6dc8e2349cb8d1551fbda authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Merge pull request #6911 from OpenMS/develop

update release branch with latest changes

6a89e56c08df8b65f98f443df90e60dc51cf8bc5 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Fix slow string conversion (#6910)

* fix very inefficient string conversion

* remove unused function

09ee2053ff28a7c4817d38de8c41eed3c3bbdd74 authored over 1 year ago by Chris Bielow <[email protected]>
Feature - reading parameters via JSON file (#6879)

* fix-test: let us close that CTD stream before checking

* feat: adds parameter import via JS...

58b767034c603f6184d3de2e41d296f567f7face authored over 1 year ago by Simon Gene Gottlieb <[email protected]>
Merge pull request #6909 from cbielow/fix_msg_icon

fix bogus icon message on Linux (where we do not embed icons)

734547246965cf00a58edb5efb740efe3078ec39 authored over 1 year ago by Chris Bielow <[email protected]>
Merge pull request #6884 from OpenMS/RDB-logs

Better logging in RibonucleotideDB.cpp

81ec3896cc2ed615dff81a57dd57b96499ba85a7 authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

862565a22055d07c626370226259472044c6b75b authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

d883d29977ec3aaf215fc90be44a2741a00992c9 authored over 1 year ago by Chris Bielow <[email protected]>
Update src/openms/source/CHEMISTRY/RibonucleotideDB.cpp

948d88b24575c1c82fa3264cf91027b6b4eb6f1d authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into fix_msg_icon

fadd2ddcecb13de9606e3f6a639788bf75e938c6 authored over 1 year ago by Chris Bielow <[email protected]>
fix bogus icon message on Linux (where we do not embed icons)

582f8736427cdf044d63ed1bbb0c80a0a3b86f87 authored over 1 year ago by Chris Bielow <[email protected]>
Merge branch 'develop' into RDB-logs

55e81b8eadc34a588aca1cf3ec2bc2099b28d7a7 authored over 1 year ago by Timo Sachsenberg <[email protected]>
A bit of refactoring done. Build version. Windows error fixed3.

5c0b3a37e697b3fdd1c26df1d92700c0ce914025 authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build version. Windows error fixed2.

5e4025bd3b0467d71b5f5c393218a5d17659857c authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build version. Windows error fixed.

e28b19957e490b774a221578e16c28704a472661 authored over 1 year ago by KyowonJeong <[email protected]>
A bit of refactoring done. Build verions

287b7ccd0bead03cf67a6790b741680819836e43 authored over 1 year ago by KyowonJeong <[email protected]>
Negative isotope implemented!!! Now let's go with refactoring.

24cf1eb5fc5bc7eebf7adf4a9c662f22923b0965 authored over 1 year ago by KyowonJeong <[email protected]>
Base version. Need to implement negative isotope intensities.

867c92d753a6f52d333855d9b3af9b8e178bb8a6 authored over 1 year ago by KyowonJeong <[email protected]>
refactoring FLASHDeconvAlgorithm

9fd428411539a84ac956b1ef5b448ff1d3c0922e authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6908 from OpenMS/pyopenmsJenkinsfile

Update pyoms Jenkinsfile such that it checks out into a local branch with the same name

ca9d22141819aba4ea9ea628dedde6bae0b9509d authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update Jenkinsfile

fddf2875452baf4c74b53260dea727dd1dc8f255 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Merge pull request #6905 from OpenMS/pyopenmsJenkinsfile

Pyopenms jenkinsfile (for macOS silicon)

9e609261b77ded98878fff54dbc9ad76ce6aa0a2 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
forgot to remove

6ed117c734f9cf631a20c153f427e6ed83d76675 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
complete release branch

95d9a7db8512b58db85678242a3f89ea74c35139 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Dummy for FDR estimation is optimized. Get ready for PR. First we will build this version for release.

553652da0605f2973b7dda5cdbe44a6fd9a33431 authored over 1 year ago by KyowonJeong <[email protected]>
conda activate

c6fa0edcd9d86e2300b547d6301920eff3a22afe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
single quotes

aa77c1d817766992f188d7dab1cc64a748444a72 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
escape dollar

8d09913280cc820d004c4d64f3519087951dacbe authored over 1 year ago by Julianus Pfeuffer <[email protected]>
no conda needed for twine. installed with brew now

5c2405f01951d1d55828c89facdd41e40624350a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
make similar to GH actions

bc3454fb9a13f29f01a5149fffc1e0223b0e5468 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix some py scripts

d00faa80c10d765b2e6a42a6c2856a8ae85ce36a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Update Jenkinsfile (#6906)

448e3a664376040f787d743f134730ff8a5657f9 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update Jenkinsfile

387772df8c03c439f676a46e55b0b7af6233088e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
activate conda again

d556d9ad77fba277704dfa035801a651d581c373 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
fix error in test

7fa49062f81759a6743f2d5de5201c351fa90156 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
creds

042a95031e7289220258822c1f4e084f9c291864 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
qt5dir

3386c9bb8538898febd438a08ff75a5084b08c18 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
source conda init

27166254fc48ec13234438c44f47e24928e96707 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
init?

ed57898045f49732b8ccf1841c0f50764f8c9a98 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
zsh?

28f5a86e15a2b9d8cacb6c4e6b5f78f38235cc0a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
conda

4f4a0de988d89db28d90144aa9b06350da8ca761 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
steps?

17963daff2da5bcaa75eb56f235616833542c008 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
delete all

70716092c5f68edec898f1e1045c8308330e7f2e authored over 1 year ago by Julianus Pfeuffer <[email protected]>
delete

e27069c74409a974de845cd38eebb06c17e11ae1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
compiler

90e5fc688b06bd0e5a9910ee4b106eb1436b5d97 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
copmpiler

bdb314c30a184ca632fb7eccf515939c3765fa85 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
submodules

9471bbf29ff01921a82c322cbbfdf81bf0ab7f25 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
contrib

d9974a8c45b5456f3847b3d99fad93f3102eb7b9 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
path

99b86a7c29b8490b51eb16229ee67baae574fc67 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
steps

dda71a4537bb65c5d250da7aef8ac9fd359dcac1 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
steps

e152c305666d441ae3b6b324e95d26cca59430d0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
checkout

5f095c1b6c1d9e0aeca31c7ff26d10015e914e7a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

45bf9f0773ed110ad21d8cfba714fbbe1ef330c6 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

8e3c499db73a82cde83e1ad479cce1afe4e9f68a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
agent

e1c90403efcb761431c9f16dee9a858b5e9e1fc3 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[pyopenms] add jenkinsfile for silicon build

0b532508cc227ed6976424640e4a131dfd2645a0 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
[fix][pyopenms] adhoc sign libs that are copied into wheel (#6904)

591d50edb9cfceab534655406f855b71aff601a4 authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Stable version - all scoring functions fixed. Ready to do DL

feb8ba7d8b5c9db3352808a631f53786dc99d90a authored over 1 year ago by KyowonJeong <[email protected]>
fix error related to empty spectra in bruker files (#6897) (#6898)

Co-authored-by: timosachsenberg <[email protected]>

bbee91221397f4214fdbe2955222015b5609354d authored over 1 year ago by Timo Sachsenberg <[email protected]>
fix error related to empty spectra in bruker files (#6897)

Co-authored-by: timosachsenberg <[email protected]>

42ced88371fb297da9e88141c97867184fe13462 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin/develop' into release/3.0.0

46d136421365ad901ed56553a44325d68ef31380 authored over 1 year ago by Timo Sachsenberg <[email protected]>
proper container name

02f6044cfa9ec60f7aa39c01ce1046debf4cf409 authored over 1 year ago by Timo Sachsenberg <[email protected]>
push release contrib container

f53caf5dac1926dc062fb3954642308af4e38720 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update containerdeploy.yml (#6895)

dd5ffb2152a6144598dfdcbc9f9468b98d86001a authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

d9fb0faa55859d1fb2658cea8e174d554d3bf266 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

fd87ba43914ddbfe1cff020ddc0691d033000a1a authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

7ec9b45b1c3fa9991866bf5075410097b6226251 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

44246f043eaf27f24b9c1ad4d9d8337e8f56ed81 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

1190e3f2fad37b602db2140498beb9a5b19e2473 authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

a354e2e104c08ebe34e0c2f172b36bcbf4853494 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Merge remote-tracking branch 'origin' into release/3.0.0

60f9ed0abce4c56830aec923306d693a439818cb authored over 1 year ago by Timo Sachsenberg <[email protected]>
change context

d9e3cf86d56ee214e16646d2970f1e78923e63aa authored over 1 year ago by Timo Sachsenberg <[email protected]>
Update containerdeploy.yml

a93a19cb9fa1e7a212ba61ce33cc3ceedcb2b680 authored over 1 year ago by Timo Sachsenberg <[email protected]>
build contrib container from SHA of submodule (#6894)

b69650187f5aa5444555ffc4e55fd5f369cdb3b5 authored over 1 year ago by Timo Sachsenberg <[email protected]>
Bump src/pyOpenMS/pyopenms-docs from `fd4ceca` to `8c1f161` (#6891)

Bumps [src/pyOpenMS/pyopenms-docs](https://github.com/OpenMS/pyopenms-docs) from `fd4ceca` to `8...

eed26794eb6e37cf10fedf99c20da72d0986d2a8 authored over 1 year ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
some missin includes for newer boost versions, more vcpkg fixes

5f0b471c002919605bb0cf64cc1979206a0cab5a authored over 1 year ago by Julianus Pfeuffer <[email protected]>
Mac test failure fix

4fde58086887b32d8519812076fa147d15589a56 authored over 1 year ago by KyowonJeong <[email protected]>
Windows test failure fix

35c042c0eaa953afb3b6425d7e86e691706c3194 authored over 1 year ago by KyowonJeong <[email protected]>
Last touch for ASMS2023 tutorial.

cc595c4d95901ed1faab6873fcc1667a508c5021 authored over 1 year ago by KyowonJeong <[email protected]>
Merge pull request #6889 from cbielow/fix_sse

Honor MissedCleavages in SimpleSearchEngine

2e08c07c5ac16817011e5095efad1497387ad839 authored over 1 year ago by Chris Bielow <[email protected]>
FLASHDeconvDevelop branch merge ready.

afe2ce4edb2b917ae6d5f5fbb2231da32944a8fb authored over 1 year ago by KyowonJeong <[email protected]>
fix some warnings

77928671f8f838ec97fc67a536b1c71a06c45c88 authored over 1 year ago by Chris Bielow <[email protected]>