Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/OpenMS/OpenMS

The codebase of the OpenMS project
https://github.com/OpenMS/OpenMS

parameter optimized

2b25a19a1ce5a2ffd0888e612bfe92dcc3c0b615 authored over 5 years ago by kyowonjeong <[email protected]>
added nominal feature finding part. Need to be polished...

7dd328b896387ac39080786e02f66e98920c64ff authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #3963 from cbielow/fix_contrib

update contrib (MSVC14 coinor Debug libs)

a775ad66e6903668da1b80c699853ceece515b7b authored over 5 years ago by Hannes Roest <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

a72ab32c7f7d31f4275f02e835a01852a760d8ba authored over 5 years ago by kyowonjeong <[email protected]>
added nominal feature finding part. Need to be polished...

9128ad3d518455bdd539e4aa5de6914ed70fffc9 authored over 5 years ago by kyowonjeong <[email protected]>
Merge branch 'feature/TDdeconv' of https://github.com/JeeH-K/OpenMS into feature/TDdeconv

error correction for Jenkins build

fd20017f786a9779425640862882eb7c34395b51 authored over 5 years ago by JeeK <[email protected]>
error correction

ca4bd7ee25c7162264a2a3ddbaba30f8db4ff151 authored over 5 years ago by JeeK <[email protected]>
Changes in executables.cmake (for alphabetical order)

6afb9a4443416cbed03886c600b5ce3273946ac5 authored over 5 years ago by JeeK <[email protected]>
Error correction for building on Jenkins

c251ccda24dae58ce9904a9296a07b4fab2156a5 authored over 5 years ago by JeeK <[email protected]>
update contrib (MSVC14 coinor Debug libs

be91e75e57d605d3ba48814372f47e04a1b79df3 authored over 5 years ago by chris bielow <[email protected]>
added nominal feature finding part. Need to be polished...

3d3f4d8b42ebfe1b496d33bc14fff9935cfe3c29 authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

fe0cf05fd486ed8464c7e5229a7564af7087acbe authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

e6a402711e659b36d11ddbb0259ecf1805c8d0c7 authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

c9966bd43e51b202145f9b389c54b7ab5147fe27 authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

bf2128b9d10cc41bc018eb26fd34e158aeac7446 authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

33dfb780268160ffb68d99ec96ca4f9f4ddaa170 authored over 5 years ago by kyowonjeong <[email protected]>
progress bar added

86c208cd2126d1d9ecb1d0d26386c6185236c2a3 authored over 5 years ago by kyowonjeong <[email protected]>
infinite loop in mass count trimming removed...

0b1a7c074bda2c3707b03251757c7bd3c0afb7b9 authored over 5 years ago by kyowonjeong <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

edab76e4cfbf4da2a2b5fdabade9ee0c4b60fea3 authored over 5 years ago by kyowonjeong <[email protected]>
infinite loop in mass count trimming removed...

7d920f8638dd3d5d4af82d8c596e6777d566c3bd authored over 5 years ago by kyowonjeong <[email protected]>
Merge branch 'feature/TDdeconv' of https://github.com/JeeH-K/OpenMS into feature/TDdeconv

syncing with upstream (OpenMS/OpenMS)

93a38313582bd3cd429b0f7a4bee44896be59f31 authored over 5 years ago by JeeK <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into feature/TDdeconv

7ea8af248944d502ded320906f9e1a53ae3398be authored over 5 years ago by JeeK <[email protected]>
peak isotope index offset error fixed..

43f0842facb1c5fe54411cc5f9c632659a61f300 authored over 5 years ago by kyowonjeong <[email protected]>
output peak mz charge iosindex mass intensities added

d1a48a23bf67b5111adf6516d72866e277e5ea70 authored over 5 years ago by kyowonjeong <[email protected]>
output peak mz charge iosindex mass intensities added

870d9a851b8a2f6e147b8d289f4d3b5f1f379b6f authored over 5 years ago by kyowonjeong <[email protected]>
cleaned up

65961974880056e3db641e3fcecc953c2e9b9ddc authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #3959 from hroest/feature/aa_nterm

[FIX] bugfix

342395ba8b05ec653669429ce31670ec5cc90672 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #3958 from cbielow/develop

[FIX] ElementDB segfault

5b647def330f24cdbbd57c6f23ec2c4d4deb4cad authored over 5 years ago by Hannes Roest <[email protected]>
All warnings have been resolved.

e1ad2dfede6d543431a8436fdb99149e0eec3a78 authored over 5 years ago by kyowonjeong <[email protected]>
[FIX] bugfix

2c2be79a3ddb1113096131150c8bc10ae1742ada authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] ElementDB segfault

8cc23249740fd1af66199211fd4531163132741e authored over 5 years ago by Chris Bielow <[email protected]>
Merge pull request #3957 from hroest/feature/aa_nterm

[FIX] fix for N-terminal modifications

d0430ea3eb28a705896f5edcbf493d38e2c19227 authored over 5 years ago by Timo Sachsenberg <[email protected]>
Merge pull request #3955 from enetz/fix/TOPPView_export_labels

[FEATURE] TOPPView: export annotations and hide columns for export

f35d26d68d4bc830687d2e88cc82f4189af92c52 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[TEST] add test

902d95c8bf4104a7fa5780521fb10d547fef3017 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] fix for N-terminal modifications

- fix for N-terminal modifications that are only allowed on specific
amino acids, they can now...

1eda69063c51c43b1c736ce3b5c63c43e105ed95 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] fix for N-terminal modifications

- fix for N-terminal modifications that are only allowed on specific
amino acids, they can now...

4aeb1bafcfa729d14c2317a321dc5094654e7254 authored over 5 years ago by Hannes Roest <[email protected]>
directory mzml file read implemented

f050100d6c433ed05e1fadcb5187d2436a3570ee authored over 5 years ago by kyowonjeong <[email protected]>
directory mzml file read implemented

fa60b9f255d6fce869706f1ab0d6005d5c881ba8 authored over 5 years ago by kyowonjeong <[email protected]>
[FEATURE] TOPPView: export annotations and hide columns for export

PeakAnnotations are not shown in the TOPPView IdentificationView directly,
so they were not expo...

95d63d6326689db1e3cc9cf5a2673d575ec0816a authored over 5 years ago by enetz <[email protected]>
directory mzml file read implemented

042866eefc939742f58c159bf30f5c8d6b4f5d12 authored over 5 years ago by kyowonjeong <[email protected]>
directory mzml file read implemented

39eda8db9f392235727ab235df446afa7be7630c authored over 5 years ago by kyowonjeong <[email protected]>
directory mzml file read implemented

953a59abcdd0c8f5bd8a3afb126e2f2de2043424 authored over 5 years ago by kyowonjeong <[email protected]>
MzBit wrong access bug fixed.

07f6270a2b4fe7a4b02474d73f0c8de3c182067b authored over 5 years ago by kyowonjeong <[email protected]>
MzBit wrong access bug fixed.

14dba93de82d7420276de7b229a3f44af64fa13f authored over 5 years ago by kyowonjeong <[email protected]>
Enable to get input file as directory

ae58861ba509c7ba5d9c7375e0278c9dc33c3128 authored over 5 years ago by JeeK <[email protected]>
MzBit wrong access bug fixed.

7dc3ad14de8331e6f537893902507c13fb930f75 authored over 5 years ago by kyowonjeong <[email protected]>
Output file formatting complete. Random output due to wrong vector reserve resolved

6a9a268c2dd16fb59fddb9d917faa0cbb2d68d25 authored over 5 years ago by kyowonjeong <[email protected]>
Merge remote-tracking branch 'JeeH-K/feature/TDdeconv' into feature/TDdeconv

1c4e2587434357fa5e0e7d400a1a88a8dc948cd3 authored over 5 years ago by kyowonjeong <[email protected]>
Output file formatting complete. Random output due to wrong vector reserve resolved

bb0246c30499e5b64d1ff379246f5b13ad72d923 authored over 5 years ago by kyowonjeong <[email protected]>
Changes for completing test

b842a4f7e4cd105f10d711c369ad3c26116bc618 authored over 5 years ago by JeeK <[email protected]>
merged with option selectin. renamed to flahsdeconv

802a28117fd244bbb4ee4394207d678178d48709 authored over 5 years ago by kyowonjeong <[email protected]>
merged with option selectin. renamed to flahsdeconv

3e8793a2744d9d5d486e9bf54fd7a41b8eeba134 authored over 5 years ago by kyowonjeong <[email protected]>
merged with option selectin. renamed to flahsdeconv

40c2ab76c2f63fa90a8eaa201b315c73bab856c8 authored over 5 years ago by kyowonjeong <[email protected]>
Adding user options

67d115bd5009d4195b0267be0442fd8ed256d575 authored over 5 years ago by JeeK <[email protected]>
Merge remote-tracking branch 'origin/feature/TDdeconv' into feature/TDdeconv

# Conflicts:
# src/utils/TopDownOnlineDeconv.cpp

8bf2d3ed8fa7f12977b8a723894e02af21de6bb0 authored over 5 years ago by JeeK <[email protected]>
Adding user options

8c63fd45e41506f7320ad57bf5c3eb66ee0d03c0 authored over 5 years ago by JeeK <[email protected]>
souce code rearranged..

145ed5a03465f67d5a448a46f18c38824df28b4d authored over 5 years ago by kyowonjeong <[email protected]>
including usage options

36b4423d1ce9f9939be2dc7bcf4e82bc0650a8d1 authored over 5 years ago by JeeK <[email protected]>
souce code rearranged..

7963c493a729b81c2a740ea6ce5c6d2614e763aa authored over 5 years ago by kyowonjeong <[email protected]>
souce code rearranged..

bba8f0109e782b400b43b325b5d68180511971df authored over 5 years ago by kyowonjeong <[email protected]>
ASMS2019. Deisotope improved - more focused monoisotope.

8d6a8944742234d2d7286207e584db40905bdf15 authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #3950 from oliveralka/fix/LuciphorAdapter_pep

[FIX] LuciphorAdapter

f663f88a3a20e841fa3bb1fabfe39c2af11c2e1a authored over 5 years ago by jpfeuffer <[email protected]>
[FIX] PepXMLFile, Percolator pepe score, LuciphorAdapter

24bb0ed595e1d7c375109d73c5eb9b5559df049e authored over 5 years ago by oliveralka <[email protected]>
Merge pull request #3949 from oliveralka/fix/LuciPhorAdapter_SpectrumLookUp

[FIX] LuciphorAdapter - ConsensusID

360b4b140d5b57ed2aefdce9987308bdd61658b1 authored over 5 years ago by jpfeuffer <[email protected]>
[ERR] add error report

692f92c0b4626a7bee3947e1f56646775992df0b authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] test fix?

4bf7aaf62dc21a34edf58da0f362b29cf69bbba0 authored over 5 years ago by Hannes Roest <[email protected]>
[ADD] set min value

48915c32241016faeccb88c70ae94ca2b3712e03 authored over 5 years ago by oliveralka <[email protected]>
[FIX] parameter: rt_tolerance

ea12ae9dd131d63663c8b9d6b84ff0c52c0a1940 authored over 5 years ago by oliveralka <[email protected]>
ASMS2019. Deisotope improved - more focused monoisotope.

39f8ba036490ad3beb118054b4a729c55199074e authored over 5 years ago by kyowonjeong <[email protected]>
[FIX] backwards compatible implementation

dfe164e5a7a345484e5221ecb069765cbbddcb31 authored over 5 years ago by Hannes Roest <[email protected]>
[NOP] whitespace

9b936b7dc228dc189aabbd59ddcf2f2a9023ed92 authored over 5 years ago by Hannes Roest <[email protected]>
[FIX] add file format version

742d45e63e03fa918ba2f4027282b205efb2b514 authored over 5 years ago by Hannes Roest <[email protected]>
[NOP] cosmetics

d5f4fcd9bf84ea973326976f33b2023ff327c2de authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] also test pqp input file with ion mobility

26ec9e7f0f17a8c8803b706debc568f0b324affc authored over 5 years ago by Hannes Roest <[email protected]>
[TEST] add test for PQP

9a36a269f85af0cbaf582366203bafd63757041c authored over 5 years ago by Hannes Roest <[email protected]>
[FEATURE] add drift time to PQP

- retrieve drift time
- store drift time

7104c4ec9ca08799ccdaa007c66a0d0a587beb0e authored over 5 years ago by Hannes Roest <[email protected]>
Merge branch 'develop' into feature/pyopenms_string

c45fd13c9c466b25e98512adbcd31f3f122543af authored over 5 years ago by Hannes Roest <[email protected]>
ASMS2019 version3 Isotope bug fixed and increased running time. ... will be added for a few days..

92b79d64d78e13db527a4c1c5bdbdf040368aaf6 authored over 5 years ago by kyowonjeong <[email protected]>
Merge pull request #3946 from timosachsenberg/feature/RNPxl_logReg

Feature/rn pxl log reg

31d4cb84cae561148489fc9d09a497b1c0102b6e authored over 5 years ago by Timo Sachsenberg <[email protected]>
[TEST] for IDFilter

23ef5893c4c537b237048425852f443c6f899927 authored over 5 years ago by timosachsenberg <[email protected]>
[NOP] fixed some style issues

0fee1c64b9798bf328a87dc22fadae055aeddcf9 authored over 5 years ago by timosachsenberg <[email protected]>
[FIX] made RNPxlSearch a bit more sensitive again

92bd2fa0641852695457984f6de56da60ce8e910 authored over 5 years ago by timosachsenberg <[email protected]>
Merge remote-tracking branch 'upstream/develop' into feature/RNPxl_logReg

51b8ea230bf82e10f55a84004627fd0a0385e4ee authored over 5 years ago by timosachsenberg <[email protected]>
Merge pull request #3945 from oliveralka/fix/SiriusAdapter_extension

[ADD] .ms as file format (SIRIUS)

80c57eca0a70b048a60b1ae7e6a8a0fd1b581590 authored over 5 years ago by Timo Sachsenberg <[email protected]>
[ADD] .ms file format

0e5997f59b0e4ad44b165dd4eae3854ad1be6687 authored over 5 years ago by oliveralka <[email protected]>
ASMS2019 version2 ... will be added for a few days..

8aaf1f9589d667cff90192a4e8c19da9fb9f009c authored over 5 years ago by kyowonjeong <[email protected]>
ASMS2019 version

dfd3ce2477ffa10acda6e2e1ca122791707949c0 authored over 5 years ago by kyowonjeong <[email protected]>
isotope peak redundancy reduced..

7f07df5c7294919baab24954ef5b4f29bcfa7db4 authored almost 6 years ago by kyowonjeong <[email protected]>
Merge pull request #3942 from enetz/fix/TOPPView_negative_int

[FIX, GUI] moved a warning message box to the end of the function

de4bc96542fb9ac3c695cccd4476403a7d9298b3 authored almost 6 years ago by Timo Sachsenberg <[email protected]>
isotope peak redundancy reduced..

6693b31aaeb8fbfb04f182db65d905307db487b6 authored almost 6 years ago by kyowonjeong <[email protected]>
Merge pull request #3941 from jpfeuffer/fix/TOPPlog

[Fix] topp log

1c5cf83322b564ccc2953c36301f47aa1d22e4e4 authored almost 6 years ago by jpfeuffer <[email protected]>
[FIX, GUI] moved a warning message box to the end of the function

the message box paused the execution of the rest of the function prematurely

6ebc6c7e5f87bc08ce4d6fef0ebaf4acb1d170fb authored almost 6 years ago by enetz <[email protected]>
retention time output added

d9545a6dfba543e5f5c1a1ee548db88d4ad30b67 authored almost 6 years ago by kyowonjeong <[email protected]>
Merge pull request #3938 from lars20070/fix/NegativeIntensities

correct negative intensities in FeatureFinderMultiplex in centroid mode

c70890ccdfcd6c7197429e01a6c36d57382c0a74 authored almost 6 years ago by Eugen Netz <[email protected]>
Merge pull request #3940 from jpfeuffer/fix/contribSeqAn

[Fix] contrib SeqAn

2d6961c31b780bcfffc8eafc59a3f0edc18648c7 authored almost 6 years ago by jpfeuffer <[email protected]>
fixed serious bug in TOPPBase with logging

07990fe738eb751e45a146f061b3f4c89e5eec3c authored almost 6 years ago by Julianus Pfeuffer <[email protected]>
[FIX] fix link

a9359b74de991318fa586a977ec5521ff08cd7c6 authored almost 6 years ago by Hannes Roest <[email protected]>
fast, sensitive, specific.

Issues to address : peak redundancy for scoring, better scoring, isotope part..

fc65b9c66851eeb813d32b7b88de7ad4cba8038f authored almost 6 years ago by kyowonjeong <[email protected]>
Update contrib to fix seqan bug

cccf346f45b85abde6a6a57ed261a4c86db34361 authored almost 6 years ago by Julianus Pfeuffer <[email protected]>
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into develop

5088cdacaaf644e07cde7ed471e46da6299f2038 authored almost 6 years ago by Julianus Pfeuffer <[email protected]>