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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
github.com/BioJulia/Automa.jl
A julia code generator for regular expressions
Stars: 176 - Last synced: 17 Oct 2024
github.com/BioJulia/BioSequences.jl
Biological sequences for the julia language
Stars: 146 - Last synced: 17 Oct 2024
github.com/BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Stars: 85 - Last synced: 17 Oct 2024
github.com/BioJulia/GenomeGraphs.jl
A modern genomics framework for julia
Stars: 64 - Last synced: 17 Oct 2024
github.com/BioJulia/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
Stars: 55 - Last synced: 17 Oct 2024
github.com/BioJulia/BioMakie.jl
Plotting and interface tools for biology.
Stars: 53 - Last synced: 17 Oct 2024
github.com/BioJulia/IntervalTrees.jl
A data structure for efficient manipulation of sets of intervals
Stars: 43 - Last synced: 17 Oct 2024
github.com/BioJulia/BioFmtSpecimens
A collection of bioinformatics file format specimens to test against
Stars: 40 - Last synced: 17 Oct 2024
github.com/BioJulia/GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
Stars: 38 - Last synced: 17 Oct 2024
github.com/BioJulia/GenomicFeatures.jl
Tools for genomic features in Julia.
Stars: 32 - Last synced: 17 Oct 2024
github.com/BioJulia/BioSymbols.jl
Nucleic and amino acid primitive types
Stars: 30 - Last synced: 17 Oct 2024
github.com/BioJulia/BioCore.jl
Core types and interfaces for BioJulia packages
Stars: 29 - Last synced: 17 Oct 2024
github.com/BioJulia/BioTutorials
Tutorial Notebooks of BioJulia
Stars: 28 - Last synced: 17 Oct 2024
github.com/BioJulia/XAM.jl
Parse and process SAM and BAM formatted files
Stars: 27 - Last synced: 17 Oct 2024
github.com/BioJulia/BioServices.jl
Julia interface to APIs for various bio-related web services
Stars: 21 - Last synced: 17 Oct 2024
github.com/BioJulia/Kmers.jl
In development: Kmer types and methods for julia
Stars: 20 - Last synced: 17 Oct 2024
github.com/BioJulia/MemoryViews.jl
Simple, low-level views into memory in Julia
Stars: 17 - Last synced: 17 Oct 2024
github.com/BioJulia/SubstitutionModels.jl
Biological Sequence Substitution Models for Julia
Stars: 17 - Last synced: 17 Oct 2024
github.com/BioJulia/Contributing
Documentation, guidelines, and policy on contributing to all BioJulia repositories
Stars: 15 - Last synced: 17 Oct 2024
github.com/BioJulia/SingleCellProjections.jl
Analysis of Single Cell Expression data in Julia
Stars: 14 - Last synced: 17 Oct 2024
github.com/BioJulia/BioTools.jl
Interfaces to common external biological tools from julia scripts and programs
Stars: 14 - Last synced: 17 Oct 2024
github.com/BioJulia/BioGenerics.jl
Generic methods, types and modules for the BioJulia ecosystem.
Stars: 12 - Last synced: 17 Oct 2024
github.com/BioJulia/KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
Stars: 12 - Last synced: 17 Oct 2024
github.com/BioJulia/IndexableBitVectors.jl
Fully indexable dictionaries - access/rank/select operations
Stars: 12 - Last synced: 17 Oct 2024
github.com/BioJulia/FormatSpecimens.jl
Biological file format specimens for testing packages, and functions to assist in testing.
Stars: 11 - Last synced: 17 Oct 2024
github.com/BioJulia/ProteinSecondaryStructures.jl
Wrapper to protein secondary structure calculation packages
Stars: 11 - Last synced: 17 Oct 2024
github.com/BioJulia/ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
Stars: 11 - Last synced: 17 Oct 2024
github.com/BioJulia/BioFetch.jl
Easily fetch biological sequences from online sources
Stars: 10 - Last synced: 17 Oct 2024
github.com/BioJulia/SequenceVariation.jl
Biological sequence variation
Stars: 9 - Last synced: 17 Oct 2024
github.com/BioJulia/TwoBit.jl
Support for working with 2Bit formatted sequence data files
Stars: 9 - Last synced: 17 Oct 2024
github.com/BioJulia/Phylogenies.jl
The BioJulia package for working with phylogenetic trees and geneologies.
Stars: 8 - Last synced: 17 Oct 2024
github.com/BioJulia/MMTF.jl
A Julia package to read and write MMTF files
Stars: 8 - Last synced: 17 Oct 2024
github.com/BioJulia/NaturalSelection.jl
A package containing methods for looking at the effects of natural selection
Stars: 6 - Last synced: 17 Oct 2024
github.com/BioJulia/PopGenCore.jl
Core utilities for PopGen.jl, including the PopData type and file IO
Stars: 6 - Last synced: 17 Oct 2024
github.com/BioJulia/talks
Slides and materials for talks about BioJulia
Stars: 5 - Last synced: 17 Oct 2024
github.com/BioJulia/KmerAnalysisMakie.jl
Makie recpies for visualising KmerAnalysis types and results.
Stars: 3 - Last synced: 17 Oct 2024
github.com/BioJulia/WAHVectors.jl
Compress bit vectors using the Word Aligned Hybrid method.
Stars: 2 - Last synced: 17 Oct 2024
github.com/BioJulia/GraphicalFragmentAssembly.jl
Parser for the GFA format
Stars: 2 - Last synced: 17 Oct 2024
github.com/BioJulia/BioJulia-stickers
Stickers and logos for BioJulia packages
Stars: 1 - Last synced: 17 Oct 2024
github.com/BioJulia/abstracts
Abstracts for conference talks, posters, and papers
Stars: 1 - Last synced: 17 Oct 2024
github.com/BioJulia/BSG.jl
A wrapper for the BSG library and suite of tools
Stars: 1 - Last synced: 17 Oct 2024
github.com/BioJulia/Community-Issues
Repo to track BioJulia organisation level issues.
Stars: 1 - Last synced: 17 Oct 2024
github.com/BioJulia/PairwiseMappingFormat.jl
Parser for the PAF format in bioinformatics
Stars: 0 - Last synced: 17 Oct 2024
github.com/BioJulia/XAMAuxData.jl
Read auxiliary data fields in SAM, GFA and PAF formats
Stars: 0 - Last synced: 17 Oct 2024