BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
julia: MMTF 1.0.0
A Julia package to read and write MMTF filesgithub.com/BioJulia/MMTF.jl - 3 versions - Latest release: about 5 years ago - 1 dependent package - 96 downloads last month
julia: TwoBit 0.2.0
Support for working with 2Bit formatted sequence data filesgithub.com/BioJulia/TwoBit.jl - 2 versions - Latest release: over 4 years ago - 11 downloads last month
julia: KmerAnalysisMakie 0.2.3
Makie recpies for visualising KmerAnalysis types and results.github.com/BioJulia/KmerAnalysisMakie.jl - 5 versions - Latest release: about 6 years ago - 7 downloads last month
julia: BioGenerics 0.1.5
Generic methods, types and modules for the BioJulia ecosystem.github.com/BioJulia/BioGenerics.jl - 6 versions - Latest release: about 2 years ago - 14 dependent packages - 2.16 thousand downloads last month
guix: julia-biogenerics 0.0.0-1.a75abaf
Generic methods used by BioJulia packagesgithub.com/BioJulia/BioGenerics.jl - 1 version - Latest release: 6 months ago
julia: GeneticVariation 0.4.1
Datastructures and algorithms for working with genetic variationgithub.com/BioJulia/GeneticVariation.jl - 2 versions - Latest release: over 3 years ago - 3 dependent packages - 8 dependent repositories - 49 downloads last month
Top 5.1% on proxy.golang.org
go: github.com/BioJulia/GFF3.jl v0.2.3
github.com/BioJulia/GFF3.jl - 6 versions - Latest release: about 3 years ago
Top 5.1% on proxy.golang.org
go: github.com/biojulia/gff3.jl v0.2.3
github.com/BioJulia/GFF3.jl - 6 versions - Latest release: about 3 years agojulia: GFF3 0.2.3
github.com/BioJulia/GFF3.jl - 6 versions - Latest release: about 3 years ago - 32 downloads last month
Top 8.5% on juliahub.com
github.com/BioJulia/BioCore.jl - 6 versions - Latest release: almost 8 years ago - 14 dependent packages - 26 dependent repositories - 141 downloads last month
julia: BioCore 2.0.5
Core types and interfaces for BioJulia packagesgithub.com/BioJulia/BioCore.jl - 6 versions - Latest release: almost 8 years ago - 14 dependent packages - 26 dependent repositories - 141 downloads last month
Top 4.8% on proxy.golang.org
github.com/BioJulia/BioCore.jl - 13 versions - Latest release: almost 8 years ago
go: github.com/biojulia/biocore.jl v2.0.5+incompatible
Core types and interfaces for BioJulia packagesgithub.com/BioJulia/BioCore.jl - 13 versions - Latest release: almost 8 years ago
julia: BioFetch 0.2.1
Easily fetch biological sequences from online sourcesgithub.com/BioJulia/BioFetch.jl - 3 versions - Latest release: almost 4 years ago - 5 downloads last month
julia: Kmers 1.2.0
Efficient types and methods for K-mer biosequencesgithub.com/BioJulia/Kmers.jl - 4 versions - Latest release: about 1 year ago - 1 dependent package - 28 downloads last month
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioFmtSpecimens - 1 version - Latest release: over 8 years ago
go: github.com/biojulia/biofmtspecimens v1.0.0
A collection of bioinformatics file format specimens to test againstgithub.com/BioJulia/BioFmtSpecimens - 1 version - Latest release: over 8 years ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioFmtSpecimens - 1 version - Latest release: over 8 years ago
go: github.com/BioJulia/BioFmtSpecimens v1.0.0
A collection of bioinformatics file format specimens to test againstgithub.com/BioJulia/BioFmtSpecimens - 1 version - Latest release: over 8 years ago
julia: FormatSpecimens 1.4.0
Biological file format specimens for testing packages, and functions to assist in testing.github.com/BioJulia/FormatSpecimens.jl - 8 versions - Latest release: 10 months ago - 169 downloads last month
julia: Indexes 0.2.0
github.com/BioJulia/Indexes.jl - 5 versions - Latest release: over 4 years ago - 3 dependent packages - 120 downloads last monthjulia: BED 0.3.1
github.com/BioJulia/BED.jl - 6 versions - Latest release: about 2 years ago - 1 dependent package - 14 downloads last monthjulia: BioServices 0.4.1
Julia interface to APIs for various bio-related web servicesgithub.com/BioJulia/BioServices.jl - 5 versions - Latest release: over 3 years ago - 3 dependent packages - 9 dependent repositories - 12 downloads last month
guix: julia-indexablebitvectors 1.0.0
Bit vectors operations with extremely fast speedgithub.com/BioJulia/IndexableBitVectors.jl - 1 version - Latest release: 6 months ago
julia: IndexableBitVectors 1.0.0
Fully indexable dictionaries - access/rank/select operationsgithub.com/BioJulia/IndexableBitVectors.jl - 1 version - Latest release: about 8 years ago - 1 dependent package - 8 dependent repositories - 156 downloads last month
guix: julia-biosymbols 4.0.4
Primitive types for nucleic acids and amino acidsgithub.com/BioJulia/BioSymbols.jl - 1 version - Latest release: 6 months ago
Top 9.4% on juliahub.com
github.com/BioJulia/BioSymbols.jl - 14 versions - Latest release: over 1 year ago - 11 dependent packages - 12 dependent repositories - 1.33 thousand downloads last month
julia: BioSymbols 5.2.0
Nucleic and amino acid primitive typesgithub.com/BioJulia/BioSymbols.jl - 14 versions - Latest release: over 1 year ago - 11 dependent packages - 12 dependent repositories - 1.33 thousand downloads last month
Top 9.2% on juliahub.com
github.com/BioJulia/Libz.jl - 3 versions - Latest release: over 6 years ago - 7 dependent packages - 38 dependent repositories - 1.03 thousand downloads last month
julia: Libz 1.0.1
Fast, flexible zlib bindings.github.com/BioJulia/Libz.jl - 3 versions - Latest release: over 6 years ago - 7 dependent packages - 38 dependent repositories - 1.03 thousand downloads last month
julia: SubstitutionModels 0.5.0
Biological Sequence Substitution Models for Juliagithub.com/BioJulia/SubstitutionModels.jl - 8 versions - Latest release: almost 5 years ago - 1 dependent package - 14 downloads last month
Top 8.1% on juliahub.com
github.com/BioJulia/IntervalTrees.jl - 2 versions - Latest release: over 3 years ago - 7 dependent packages - 24 dependent repositories - 6.84 thousand downloads last month
julia: IntervalTrees 1.1.0
A data structure for efficient manipulation of sets of intervalsgithub.com/BioJulia/IntervalTrees.jl - 2 versions - Latest release: over 3 years ago - 7 dependent packages - 24 dependent repositories - 6.84 thousand downloads last month
guix: julia-intervaltrees 1.0.0-1.e37edab
Interval Trees for Juliagithub.com/BioJulia/IntervalTrees.jl - 1 version - Latest release: 6 months ago
guix: julia-automa 0.8.2
Validation, parsing, and tokenizing based on state machine compilergithub.com/BioJulia/Automa.jl - 1 version - Latest release: 6 months ago
Top 4.8% on juliahub.com
github.com/BioJulia/Automa.jl - 12 versions - Latest release: almost 2 years ago - 19 dependent packages - 18 dependent repositories - 62.2 thousand downloads last month
julia: Automa 1.1.0
A julia code generator for regular expressionsgithub.com/BioJulia/Automa.jl - 12 versions - Latest release: almost 2 years ago - 19 dependent packages - 18 dependent repositories - 62.2 thousand downloads last month
julia: XAM 0.4.2
Parse and process SAM and BAM formatted filesgithub.com/BioJulia/XAM.jl - 16 versions - Latest release: over 1 year ago - 4 dependent packages - 105 downloads last month
julia: SequenceVariation 0.2.2
Biological sequence variationgithub.com/BioJulia/SequenceVariation.jl - 8 versions - Latest release: over 3 years ago - 1 dependent package - 12 downloads last month
julia: SingleCellProjections 0.4.4
Analysis of Single Cell Expression data in Juliagithub.com/BioJulia/SingleCellProjections.jl - 21 versions - Latest release: almost 2 years ago - 29 downloads last month
julia: PopGenCore 0.7.2
Core utilities for PopGen.jl, including the PopData type and file IOgithub.com/BioJulia/PopGenCore.jl - 11 versions - Latest release: almost 2 years ago - 2 dependent packages - 16 downloads last month
julia: Codecs 0.5.0
Common data encoding algorithmsgithub.com/BioJulia/Codecs.jl - 1 version - Latest release: about 8 years ago - 1 dependent package - 19 dependent repositories - 238 downloads last month
Top 7.8% on juliahub.com
github.com/BioJulia/BioStructures.jl - 46 versions - Latest release: 8 months ago - 5 dependent packages - 8 dependent repositories - 764 downloads last month
julia: BioStructures 4.7.1
A Julia package to read, write and manipulate macromolecular structuresgithub.com/BioJulia/BioStructures.jl - 46 versions - Latest release: 8 months ago - 5 dependent packages - 8 dependent repositories - 764 downloads last month
Top 4.7% on proxy.golang.org
github.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
go: github.com/BIoJulia/BIoStructures.jl v4.7.3+incompatible
A Julia package to read, write and manipulate macromolecular structuresgithub.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
go: github.com/biojulia/biostructures.jl v4.7.3+incompatible
A Julia package to read, write and manipulate macromolecular structuresgithub.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
Top 4.7% on proxy.golang.org
github.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
go: github.com/BioJulia/BioStructures.Jl v4.7.3+incompatible
A Julia package to read, write and manipulate macromolecular structuresgithub.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
go: github.com/BioJulia/BioStructures.jl v4.7.3+incompatible
A Julia package to read, write and manipulate macromolecular structuresgithub.com/BioJulia/BioStructures.jl - 50 versions - Latest release: 24 days ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
go: github.com/BioJulia/BIOSequences.jl v3.5.1+incompatible
Biological sequences for the julia languagegithub.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
go: github.com/biojulia/biosequences.jl v3.5.1+incompatible
Biological sequences for the julia languagegithub.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
Top 5.1% on proxy.golang.org
github.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
go: github.com/BioJulia/BioSequences.jl v3.5.1+incompatible
Biological sequences for the julia languagegithub.com/BioJulia/BioSequences.jl - 35 versions - Latest release: 7 months ago
Top 2.9% on juliahub.com
github.com/BioJulia/BioSequences.jl - 26 versions - Latest release: 8 months ago - 32 dependent packages - 51 dependent repositories - 857 downloads last month
julia: BioSequences 3.5.1
Biological sequences for the julia languagegithub.com/BioJulia/BioSequences.jl - 26 versions - Latest release: 8 months ago - 32 dependent packages - 51 dependent repositories - 857 downloads last month
julia: CIGARStrings 0.1.4
Read and write Concise Idiosyncratic Gapped Alignment Reports.github.com/BioJulia/CIGARStrings.jl - 4 versions - Latest release: 11 months ago - 0 downloads total
Top 8.0% on juliahub.com
github.com/BioJulia/NCBIBlast.jl - 2 versions - Latest release: over 1 year ago - 3 downloads total
julia: NCBIBlast 0.2.0
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/github.com/BioJulia/NCBIBlast.jl - 2 versions - Latest release: over 1 year ago - 3 downloads total
julia: BioMakie 0.4.4
Plotting and interface tools for biology.github.com/BioJulia/BioMakie.jl - 11 versions - Latest release: about 1 year ago - 18 downloads last month
Top 4.8% on proxy.golang.org
github.com/BioJulia/BioMakie.jl - 11 versions - Latest release: about 1 year ago
go: github.com/BioJulia/BioMakie.jl v0.4.4
Plotting and interface tools for biology.github.com/BioJulia/BioMakie.jl - 11 versions - Latest release: about 1 year ago
Top 4.8% on proxy.golang.org
github.com/BioJulia/BioMakie.jl - 11 versions - Latest release: about 1 year ago
go: github.com/biojulia/biomakie.jl v0.4.4
Plotting and interface tools for biology.github.com/BioJulia/BioMakie.jl - 11 versions - Latest release: about 1 year ago
julia: Bio 1.0.1
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Juliagithub.com/BioJulia/Bio.jl - 2 versions - Latest release: almost 4 years ago - 8 dependent repositories - 3 downloads last month
Top 4.7% on proxy.golang.org
github.com/BioJulia/Bio.jl - 14 versions - Latest release: over 7 years ago
go: github.com/BioJulia/Bio.jl v1.0.0
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Juliagithub.com/BioJulia/Bio.jl - 14 versions - Latest release: over 7 years ago
Top 4.7% on proxy.golang.org
github.com/BioJulia/Bio.jl - 14 versions - Latest release: over 7 years ago
go: github.com/biojulia/bio.jl v1.0.0
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Juliagithub.com/BioJulia/Bio.jl - 14 versions - Latest release: over 7 years ago
Top 7.6% on juliahub.com
github.com/BioJulia/MemoryViews.jl - 12 versions - Latest release: 7 months ago - 401 downloads last month
julia: MemoryViews 0.4.0
Simple, low-level views into memory in Juliagithub.com/BioJulia/MemoryViews.jl - 12 versions - Latest release: 7 months ago - 401 downloads last month
julia: KmerAnalysis 0.4.4
K-mer counting algorithms and count-data utilities for the BioJulia frameworkgithub.com/BioJulia/KmerAnalysis.jl - 8 versions - Latest release: about 6 years ago - 1 dependent package - 9 downloads last month
julia: GenomeGraphs 0.2.0
A modern genomics framework for juliagithub.com/BioJulia/GenomeGraphs.jl - 2 versions - Latest release: almost 4 years ago - 1 dependent package - 2 downloads last month
julia: ReadDatastores 0.4.0
Datastores for reads, not your papa's FASTQ files.github.com/BioJulia/ReadDatastores.jl - 5 versions - Latest release: almost 4 years ago - 2 dependent packages - 5 downloads last month
julia: BufferIO 0.2.5
The buffer is the interfacegithub.com/BioJulia/BufferIO.jl - 7 versions - Latest release: 7 months ago - 208 downloads last month
julia: BGZFLib 0.1.3
Read and write BGZF filesgithub.com/BioJulia/BGZFLib.jl - 4 versions - Latest release: 7 months ago - 1 downloads last month
guix: julia-bioalignments 2.0.0
Sequence alignment algorithm and data structuresgithub.com/BioJulia/BioAlignments.jl - 1 version - Latest release: 6 months ago
Top 6.4% on juliahub.com
github.com/BioJulia/BioAlignments.jl - 8 versions - Latest release: over 3 years ago - 12 dependent packages - 13 dependent repositories - 234 downloads last month
julia: BioAlignments 3.1.0
Sequence alignment toolsgithub.com/BioJulia/BioAlignments.jl - 8 versions - Latest release: over 3 years ago - 12 dependent packages - 13 dependent repositories - 234 downloads last month
pypi: mkdocs-biojulia 1.0.1
Mkdocs Cinder theme customised for BioJulia.github.com/BioJulia/mkdocs-biojulia - 2 versions - Latest release: over 9 years ago - 3 dependent repositories - 22 downloads last month
Top 8.0% on juliahub.com
github.com/BioJulia/XAMAuxData.jl - 6 versions - Latest release: 7 months ago - 34 downloads last month
julia: XAMAuxData 0.1.5
Read auxiliary data fields in SAM, GFA and PAF formatsgithub.com/BioJulia/XAMAuxData.jl - 6 versions - Latest release: 7 months ago - 34 downloads last month
julia: MicrobiomePlots 0.1.0
github.com/BioJulia/MicrobiomePlots.jl - 1 version - Latest release: almost 8 years ago - 1 downloads last month
Top 7.8% on juliahub.com
github.com/BioJulia/PairwiseMappingFormat.jl - 2 versions - Latest release: over 1 year ago - 4 downloads last month
julia: PairwiseMappingFormat 0.1.1
Parser for the PAF format in bioinformaticsgithub.com/BioJulia/PairwiseMappingFormat.jl - 2 versions - Latest release: over 1 year ago - 4 downloads last month
julia: BioTools 1.2.0
DEPRECATED Interfaces to common external biological tools from julia scripts and programsgithub.com/BioJulia/BioTools.jl - 4 versions - Latest release: almost 2 years ago - 2 dependent packages - 9 dependent repositories - 5 downloads last month
julia: BGZFStreams 0.3.2
BGZF Streamgithub.com/BioJulia/BGZFStreams.jl - 3 versions - Latest release: about 3 years ago - 9 dependent packages - 13 dependent repositories - 865 downloads last month
Top 9.5% on juliahub.com
github.com/BioJulia/GenomicFeatures.jl - 13 versions - Latest release: about 3 years ago - 13 dependent packages - 8 dependent repositories - 132 downloads last month
julia: GenomicFeatures 3.0.0
Tools for genomic features in Julia.github.com/BioJulia/GenomicFeatures.jl - 13 versions - Latest release: about 3 years ago - 13 dependent packages - 8 dependent repositories - 132 downloads last month
julia: BigBed 0.1.0
github.com/BioJulia/BigBed.jl - 1 version - Latest release: over 6 years ago - 1 downloads last monthjulia: BigWig 0.1.0
github.com/BioJulia/BigWig.jl - 1 version - Latest release: over 6 years ago - 5 downloads last monthjulia: BBI 0.2.1
github.com/BioJulia/BBI.jl - 4 versions - Latest release: about 6 years ago - 2 dependent packages - 8 downloads last monthjulia: ProteinSecondaryStructures 2.0.3
Wrapper to protein secondary structure calculation packagesgithub.com/BioJulia/ProteinSecondaryStructures.jl - 18 versions - Latest release: about 2 years ago - 1.14 thousand downloads last month
Top 9.6% on juliahub.com
github.com/BioJulia/FASTX.jl - 17 versions - Latest release: about 2 years ago - 19 dependent packages - 674 downloads last month
julia: FASTX 2.1.7
Parse and process FASTA and FASTQ formatted files of biological sequences.github.com/BioJulia/FASTX.jl - 17 versions - Latest release: about 2 years ago - 19 dependent packages - 674 downloads last month
julia: GenomicAnnotations 0.4.6
github.com/BioJulia/GenomicAnnotations.jl - 26 versions - Latest release: 10 months ago - 2 dependent packages - 3 dependent repositories - 102 downloads last monthjulia: KWayMerges 0.2.0
Implementation of k-way merge algorithms in Juliagithub.com/BioJulia/KWayMerges.jl - 2 versions - Latest release: about 1 year ago - 5 downloads last month
julia: PopGen 0.9.5
Population Genetics in Juliagithub.com/BioJulia/PopGen.jl - 24 versions - Latest release: almost 2 years ago - 1 dependent package - 28 downloads last month