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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Use separate tokenizers

github.com/BioJulia/Automa.jl - tlienart opened this issue about 1 year ago
project up

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
CompatHelper: bump compat for Meshes to 0.35, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Cap Automa compat to address Stream submodule removal

github.com/BioJulia/GFF3.jl - cjprybol opened this pull request about 1 year ago
A few fixes for tests

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
docs workflows

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Try moving hardware post to markdown

github.com/BioJulia/biojulia.github.io - Emiller88 opened this issue about 1 year ago
Remove duplicate images

github.com/BioJulia/biojulia.github.io - Emiller88 opened this issue about 1 year ago
Add author pages

github.com/BioJulia/biojulia.github.io - Emiller88 opened this issue about 1 year ago
Use fancy list_post function on posts page

github.com/BioJulia/biojulia.github.io - Emiller88 opened this issue about 1 year ago
msatest

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
[Feature Request] Support for GTF format!

github.com/BioJulia/GenomicAnnotations.jl - yang-dongxu opened this issue about 1 year ago
Feature: concatenate bases with sequences

github.com/BioJulia/BioSequences.jl - BioTurboNick opened this issue about 1 year ago
SpacedKmer bug for 2bit sequences

github.com/BioJulia/Kmers.jl - cjprybol opened this issue about 1 year ago
CompatHelper: bump compat for PDBTools to 0.14, (keep existing compat)

github.com/BioJulia/ProteinSecondaryStructures.jl - github-actions[bot] opened this pull request about 1 year ago
Add Tidier/R comparison, first case scenario

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
Testing build preview (don't merge)

github.com/BioJulia/biojulia.github.io - kescobo opened this pull request about 1 year ago
Package extensions

github.com/BioJulia/SingleCellProjections.jl - rasmushenningsson opened this pull request about 1 year ago
Fix tests

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Build Preview URL on a PR

github.com/BioJulia/biojulia.github.io - Emiller88 opened this issue about 1 year ago
CompatHelper: bump compat for NamedArrays to 0.10, (keep existing compat)

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 1 year ago
CompatHelper: bump compat for NamedArrays to 0.10, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
ci fix 1

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
big update 1

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
ci: Try to fix deployment from forks

github.com/BioJulia/biojulia.github.io - Emiller88 opened this pull request about 1 year ago
Add Tidier.jl to R comparison

github.com/BioJulia/BioJuliaDocs - kescobo opened this issue about 1 year ago
Add old blog posts

github.com/BioJulia/biojulia.github.io - Emiller88 opened this pull request about 1 year ago
Add join page

github.com/BioJulia/biojulia.github.io - Emiller88 opened this pull request about 1 year ago
Update CONTRIBUTING.md

github.com/BioJulia/Contributing - CiaranOMara opened this pull request about 1 year ago
Add devcontainer and instructions to build site

github.com/BioJulia/biojulia.github.io - Emiller88 opened this pull request about 1 year ago
Package needs tests

github.com/BioJulia/BBI.jl - kescobo opened this issue about 1 year ago
slower than Python's pybbi

github.com/BioJulia/BBI.jl - yang-dongxu opened this issue about 1 year ago
Update PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/Contributing - CiaranOMara opened this pull request about 1 year ago
Backport from v1: Remove SIMD capability

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request about 1 year ago
Quick fixes + Pkg environment note

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
Comparisons, Julia/BioJulia installation sections + devcontainer

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
Plotting a protein from PDB fails with error: key "ALY" not found.

github.com/BioJulia/BioMakie.jl - DoktorMike opened this issue about 1 year ago
protosyn mutation example

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
export fixlists!

github.com/BioJulia/BioStructures.jl - shuuul opened this issue about 1 year ago
Missing blog posts

github.com/BioJulia/biojulia.github.io - jakobnissen opened this issue about 1 year ago
Fix badges

github.com/BioJulia/biojulia.github.io - kescobo opened this pull request about 1 year ago
Update and simplify CONTRIBUTING.md

github.com/BioJulia/Contributing - jakobnissen opened this pull request about 1 year ago
Updates

github.com/BioJulia/Contributing - kescobo opened this pull request about 1 year ago
Finish biopython/bioconductor sections, add initial 'installing julia/biojulia' sections

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
CompatHelper: bump compat for Meshes to 0.34, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
Biojulia update

github.com/BioJulia/BioJuliaDocs - kescobo opened this pull request about 1 year ago
Updates for Transfer to BioJulia

github.com/BioJulia/SingleCellProjections.jl - kescobo opened this pull request about 1 year ago
Remake website with Xranklin

github.com/BioJulia/biojulia.github.io - kescobo opened this pull request about 1 year ago
Rewrite prep

github.com/BioJulia/biojulia.github.io - kescobo opened this pull request about 1 year ago
CompatHelper: bump compat for Meshes to 0.33, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
Add to BioJulia or BioJuliaDocs?

github.com/BioJulia/SingleCellProjections.jl - kescobo opened this issue about 1 year ago
Incorporate or link to SingleCellProjections.jl tutorial

github.com/BioJulia/BioTutorials - kescobo opened this issue about 1 year ago
Transfer to BioJulia?

github.com/BioJulia/BioMakie.jl - kescobo opened this issue about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
workflows or something?

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Use shorter name for mmcif_pdbx.dic file from DSSP_jll

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Split on crlf line endings on windows

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request about 1 year ago
WIP: Kmers.jl compatibility

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Non-indexed FASTA: access sequence by genomic region

github.com/BioJulia/FASTX.jl - apraga opened this issue about 1 year ago
Decode nocheck

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Improve heuristics of translating ambiguous nucs

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Can we skip check in `decode`?

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue about 1 year ago
Use DSSP_jll v4.4.0

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
CompatHelper: bump compat for ImageCore to 0.10, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
CompatHelper: add new compat entry for ImageShow at version 0.3, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request about 1 year ago
fix project

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
tweak kwargs

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docs again 2

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Set tight compat bounds for DSSP_jll

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request about 1 year ago
CompatHelper: bump compat for "Automa" to "1.0"

github.com/BioJulia/FASTX.jl - github-actions[bot] opened this pull request about 1 year ago
Migrate to Automa v1

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request over 1 year ago
Optimisation: Only check disambiguating preconditions once

github.com/BioJulia/Automa.jl - jakobnissen opened this issue over 1 year ago
Inconsistencies for inputs to create models

github.com/BioJulia/SubstitutionModels.jl - camilogarciabotero opened this issue over 1 year ago
Having location field in genes

github.com/BioJulia/GenomicAnnotations.jl - camilogarciabotero opened this issue over 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request over 1 year ago
Float32 support

github.com/BioJulia/SingleCellProjections.jl - rasmushenningsson opened this pull request over 1 year ago
Implement top-bar navigation for relevant BioJulia packages

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this issue over 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request over 1 year ago
DSSP not working on on windows

github.com/BioJulia/ProteinSecondaryStructures.jl - lmiq opened this issue over 1 year ago
Release latest version?

github.com/BioJulia/ReadDatastores.jl - anton083 opened this issue over 1 year ago
Run Aqua.test_all during tests

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request over 1 year ago
Use STRIDE_jll and DSSP_jll instead of user-installed executables

github.com/BioJulia/ProteinSecondaryStructures.jl - marcom opened this pull request over 1 year ago
ERROR: Error when parsing FASTX file. Saw unexpected byte 'C' on line 1

github.com/BioJulia/FASTX.jl - ljournot opened this issue over 1 year ago
Add badge for docs

github.com/BioJulia/BioJuliaDocs - kescobo opened this pull request over 1 year ago
Keep track of packages whose documentation needs work

github.com/BioJulia/BioJuliaDocs - kescobo opened this issue over 1 year ago
Release/v0.2.3

github.com/BioJulia/GFF3.jl - CiaranOMara opened this pull request over 1 year ago
Create a dev container definition

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this issue over 1 year ago
Enable documenter-dark theme, add minimum compat entries for docs dependencies

github.com/BioJulia/ReadDatastores.jl - M-PERSIC opened this pull request over 1 year ago
TagBot trigger issue

github.com/BioJulia/ProteinSecondaryStructures.jl - JuliaTagBot opened this issue over 1 year ago
interface with BioStructures

github.com/BioJulia/ProteinSecondaryStructures.jl - lmiq opened this issue over 1 year ago