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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

More tests

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Feature Request: intersecting VCFs, BAMs, GFFs, etc

github.com/BioJulia/Bio.jl - bdeonovic opened this issue over 8 years ago
Transparent uncompressed IO

github.com/BioJulia/Libz.jl - kdm9 opened this issue over 8 years ago
Refactoring and bug fixes.

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
BioFmtSpecimens as a Julia package

github.com/BioJulia/BioFmtSpecimens - SabrinaJaye opened this issue over 8 years ago
Indexes

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 8 years ago
Genotype Count Matrices for Population Genetics

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 8 years ago
Phylo Rework

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 8 years ago
use BaseTestNext instead of FactCheck

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
remove utils introduced in #12

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
set reset_on_end on by default

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Phylo revival

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 8 years ago
Add blast results xml

github.com/BioJulia/BioFmtSpecimens - kescobo opened this pull request over 8 years ago
Fix small typo in contributing guidelines

github.com/BioJulia/Contributing - jgreener64 opened this pull request over 8 years ago
add prot and nucl blast database

github.com/BioJulia/BioFmtSpecimens - kescobo opened this pull request over 8 years ago
Entrez utilities

github.com/BioJulia/Bio.jl - abhijithch opened this issue over 8 years ago
fix the style of extending methods

github.com/BioJulia/Contributing - bicycle1885 opened this pull request over 8 years ago
Rename Lapidary to Documenter.

github.com/BioJulia/Contributing - MichaelHatherly opened this pull request over 8 years ago
Binary install URL scheme

github.com/BioJulia/juju - blahah opened this issue over 8 years ago
Port nvm [WIP]

github.com/BioJulia/juju - blahah opened this pull request over 8 years ago
[meta]data sources

github.com/BioJulia/juju - blahah opened this issue over 8 years ago
fix crc32 and adler32 when Culong != UInt (fix #16)

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request almost 9 years ago
Pkg.test("Libz") fails on Windows

github.com/BioJulia/Libz.jl - bmharsha opened this issue almost 9 years ago
Some valid and invalid PDB files (protein structures)

github.com/BioJulia/BioFmtSpecimens - jgreener64 opened this pull request almost 9 years ago
find nearest interval

github.com/BioJulia/IntervalTrees.jl - simon-anders opened this issue almost 9 years ago
Update README.md with examples per #12

github.com/BioJulia/Libz.jl - samoconnor opened this pull request almost 9 years ago
Remove deprecated FileOffset

github.com/BioJulia/Libz.jl - yuyichao opened this pull request almost 9 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/BioFmtSpecimens - gitter-badger opened this pull request almost 9 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/BioFmtSpecimens - gitter-badger opened this pull request almost 9 years ago
Base.Offset is deprecated in 0.5

github.com/BioJulia/Libz.jl - hayd opened this issue almost 9 years ago
Convenience functions for dealing with .gz files

github.com/BioJulia/Libz.jl - samoconnor opened this pull request almost 9 years ago
Copy or checkpoint state of zstream?

github.com/BioJulia/Libz.jl - robertfeldt opened this issue almost 9 years ago
Libz.deflate bug?

github.com/BioJulia/Libz.jl - robertfeldt opened this issue almost 9 years ago
some gz files cannot be read correctly

github.com/BioJulia/Libz.jl - sfchen opened this issue about 9 years ago
benchmark comparisons

github.com/BioJulia/Bio.jl - gideonite opened this issue about 9 years ago
Fix minor typos in readme

github.com/BioJulia/Libz.jl - juliangehring opened this pull request about 9 years ago
Buffered data in deflated output stream

github.com/BioJulia/Libz.jl - juliangehring opened this issue about 9 years ago
Restriction Sites

github.com/BioJulia/Bio.jl - ccsv opened this issue about 9 years ago
add a protein sequence

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request about 9 years ago
Multiple Sequence Alignment

github.com/BioJulia/Bio.jl - ccsv opened this issue about 9 years ago
Add appveyor, run travis on 0.4

github.com/BioJulia/Libz.jl - tkelman opened this pull request about 9 years ago
Define `close` method?

github.com/BioJulia/Libz.jl - quinnj opened this issue about 9 years ago
fix deprecated types

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request about 9 years ago
fixes 0.4 deprecation warnings

github.com/BioJulia/Codecs.jl - ssfrr opened this pull request over 9 years ago
suppress deprecated warnings

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 9 years ago
Community expansion: steps to being welcoming and inclusive

github.com/BioJulia/Bio.jl - blahah opened this issue over 9 years ago
VCF? gVCF? GFF? BAM? SAM?

github.com/BioJulia/BioFmtSpecimens - abetusk opened this issue over 9 years ago
Teaching materials for BioJulia

github.com/BioJulia/Bio.jl - blahah opened this issue over 9 years ago
Quick question on usage

github.com/BioJulia/Libz.jl - quinnj opened this issue over 9 years ago
Parallel BGZF

github.com/BioJulia/Bio.jl - dcjones opened this issue over 9 years ago
Update README badges.

github.com/BioJulia/IndexableBitVectors.jl - dcjones opened this pull request over 9 years ago
what this code do?

github.com/BioJulia/Libz.jl - quinnj opened this issue over 9 years ago
Add precompile directive

github.com/BioJulia/Codecs.jl - timholy opened this pull request over 9 years ago
Seekable streams

github.com/BioJulia/Libz.jl - dcjones opened this issue over 9 years ago
RFC: Using external programs with BioJulia.

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 9 years ago
remove - on julia version in REQUIRE

github.com/BioJulia/IntervalTrees.jl - tkelman opened this pull request over 9 years ago
Export "Intersection"

github.com/BioJulia/IntervalTrees.jl - prcastro opened this pull request over 9 years ago
Towards interacting with Dat from Julia

github.com/BioJulia/Dat.jl - SabrinaJaye opened this pull request over 9 years ago
RFC: Bioinformatics project management with BioJulia

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 9 years ago
Toward short read alignment (JSoC 2015).

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 9 years ago
AbstractIntervalTree

github.com/BioJulia/IntervalTrees.jl - phaverty opened this issue over 9 years ago
Chromosome and strand?

github.com/BioJulia/IntervalTrees.jl - phaverty opened this issue over 9 years ago
Missing things (before deprecation of BioSeq.jl)

github.com/BioJulia/Bio.jl - diegozea opened this issue over 9 years ago
Pull request/a9a8d91c

github.com/BioJulia/IntervalTrees.jl - phaverty opened this pull request over 9 years ago
Pull request/ad3c6a1e

github.com/BioJulia/IntervalTrees.jl - phaverty opened this pull request over 9 years ago
I thought it would be nice to have a getter method for the value in I…

github.com/BioJulia/IntervalTrees.jl - phaverty opened this pull request over 9 years ago
Accession number types

github.com/BioJulia/Bio.jl - bicycle1885 opened this pull request over 9 years ago
Could you please tag a new version with the compat changes?

github.com/BioJulia/Codecs.jl - sbromberger opened this issue over 9 years ago
Updated test and deprecs

github.com/BioJulia/Codecs.jl - KristofferC opened this pull request over 9 years ago
RFC: Bio package system

github.com/BioJulia/Bio.jl - blahah opened this issue over 9 years ago
Neuro Imaging

github.com/BioJulia/Bio.jl - prcastro opened this issue over 9 years ago
Update 2015-07-BOSC.md

github.com/BioJulia/abstracts - SabrinaJaye opened this pull request over 9 years ago
[PkgEval] Your package doesn't have a test/runtests.jl file

github.com/BioJulia/Codecs.jl - IainNZ opened this issue almost 10 years ago
Consistent variable names in readme examples

github.com/BioJulia/IntervalTrees.jl - juliangehring opened this pull request almost 10 years ago
base64 decoding doesn't handle newlines.

github.com/BioJulia/Codecs.jl - zaphar opened this issue about 10 years ago
IntervalTree with value = String fails on julia 0.3.3

github.com/BioJulia/IntervalTrees.jl - juliangehring opened this issue about 10 years ago
Adding bytestring to String method?

github.com/BioJulia/Codecs.jl - randyzwitch opened this issue about 10 years ago
Mz/sentinel

github.com/BioJulia/Codecs.jl - mzaffalon opened this pull request about 10 years ago
base64 decoding displays sentinel instead of incorrect character

github.com/BioJulia/Codecs.jl - mzaffalon opened this pull request about 10 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/FactCheck.jl - gitter-badger opened this pull request about 10 years ago
[PkgEval] Codecs may have a testing issue on Julia 0.4 (2014-09-29)

github.com/BioJulia/Codecs.jl - IainNZ opened this issue about 10 years ago
Website

github.com/BioJulia/Bio.jl - blahah opened this issue over 10 years ago
Integration with BioJS for visualisation

github.com/BioJulia/Bio.jl - blahah opened this issue over 10 years ago
Newick

github.com/BioJulia/BioFmtSpecimens - blahah opened this issue over 10 years ago
PhyloXML

github.com/BioJulia/BioFmtSpecimens - blahah opened this issue over 10 years ago
FASTQ

github.com/BioJulia/BioFmtSpecimens - blahah opened this issue over 10 years ago
Visualization

github.com/BioJulia/Bio.jl - diegozea opened this issue over 10 years ago
Visually enhanced notations

github.com/BioJulia/Bio.jl - diegozea opened this issue over 10 years ago
Add Travis configuration

github.com/BioJulia/Codecs.jl - oeuftete opened this pull request over 10 years ago
v1.1.0 Hangs Julia 0.2.1

github.com/BioJulia/Codecs.jl - sbchisholm opened this issue over 10 years ago
Pull request/874247f0

github.com/BioJulia/Codecs.jl - timholy opened this pull request over 10 years ago
Seq: shuffling

github.com/BioJulia/Bio.jl - dcjones opened this issue over 10 years ago
bounds error on insertion

github.com/BioJulia/IntervalTrees.jl - nw11 opened this issue over 10 years ago
Support extending all intervals in place

github.com/BioJulia/IntervalTrees.jl - dcjones opened this issue over 10 years ago
Bulk Insertion

github.com/BioJulia/IntervalTrees.jl - dcjones opened this issue over 10 years ago
Add SHA1, other hash functions from AWS.jl?

github.com/BioJulia/Codecs.jl - randyzwitch opened this issue almost 11 years ago
Base64 encoding max string length

github.com/BioJulia/Codecs.jl - supernullset opened this issue about 11 years ago
Julia Exits when using Zlib

github.com/BioJulia/Codecs.jl - sreekanthpulagam opened this issue over 11 years ago
Interested in binary-coded decimal support?

github.com/BioJulia/Codecs.jl - timholy opened this issue over 11 years ago
BoundsError on decoding Base64 empty string

github.com/BioJulia/Codecs.jl - jprider63 opened this issue over 11 years ago