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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Export acgun and acgtn

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 7 years ago
PDBx/mmCIF and PDBML/XML support.

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 7 years ago
Site counting framework completion

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 7 years ago
Make Bio.Intervals.Interval immutable.

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 7 years ago
Move organisation level issues

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 7 years ago
Minor changes to mkdocs and types.md

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 7 years ago
restructure files in type-centric way

github.com/BioJulia/BioSymbols.jl - bicycle1885 opened this pull request over 7 years ago
improve test coverage

github.com/BioJulia/BioSymbols.jl - bicycle1885 opened this pull request over 7 years ago
add a converage badge to README.md

github.com/BioJulia/BioSymbols.jl - bicycle1885 opened this pull request over 7 years ago
remove takebuf_string from tests

github.com/BioJulia/BioSymbols.jl - bicycle1885 opened this pull request over 7 years ago
The coalescent in Phylogenies.jl

github.com/BioJulia/Phylogenies.jl - SabrinaJaye opened this issue almost 8 years ago
Unifying Phylogenetics

github.com/BioJulia/Phylogenies.jl - SabrinaJaye opened this issue almost 8 years ago
Migrating to modular software organization

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue almost 8 years ago
Julia v0.6

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request almost 8 years ago
InexactError when reading big flies

github.com/BioJulia/Libz.jl - ylxdzsw opened this issue almost 8 years ago
Missing fields

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue almost 8 years ago
add BCF files

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request almost 8 years ago
Move file format readers and writers in separated modules.

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue almost 8 years ago
fix primitive type definition

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request almost 8 years ago
Any interest in statistical genetics from BioJulia community?

github.com/BioJulia/Bio.jl - klkeys opened this issue almost 8 years ago
Fix depwarns on 0.6

github.com/BioJulia/Codecs.jl - yuyichao opened this pull request almost 8 years ago
Added convert/outer constructor method

github.com/BioJulia/IntervalTrees.jl - SabrinaJaye opened this pull request almost 8 years ago
Fix 0.6 primitive type declaration depwarn (#47)

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request almost 8 years ago
Fix 0.6 primitive type declaration depwarn

github.com/BioJulia/Libz.jl - yuyichao opened this pull request almost 8 years ago
WIP: masked sequence

github.com/BioJulia/Bio.jl - bicycle1885 opened this pull request almost 8 years ago
Fix trans macro for parser changes on Julia 0.6 (#45)

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request almost 8 years ago
Fix trans macro for Julia 0.6

github.com/BioJulia/Libz.jl - andreasnoack opened this pull request almost 8 years ago
[Proposal] New parser design for faster parsing.

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue almost 8 years ago
add some VCF

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request almost 8 years ago
add a BAM file

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request almost 8 years ago
do blocks (functions) as argument to BGZFStream

github.com/BioJulia/BGZFStreams.jl - cth opened this pull request almost 8 years ago
The coalescent in Bio.jl

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue almost 8 years ago
Update REQUIRE compat version

github.com/BioJulia/Libz.jl - musm opened this pull request almost 8 years ago
Fix deprecated takebuf_array method

github.com/BioJulia/Libz.jl - musm opened this pull request almost 8 years ago
Fix deprecated takebuf_string method

github.com/BioJulia/Libz.jl - musm opened this pull request almost 8 years ago
Fix for string data changes

github.com/BioJulia/Libz.jl - musm opened this pull request almost 8 years ago
needs update for string.data changes

github.com/BioJulia/Libz.jl - stevengj opened this issue almost 8 years ago
Allocations in `FASTAReader`

github.com/BioJulia/Bio.jl - pwl opened this issue almost 8 years ago
Prepare for v0.2.1

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request about 8 years ago
biojl.org is sometimes down

github.com/BioJulia/Bio.jl - jgreener64 opened this issue about 8 years ago
Fix trans macro

github.com/BioJulia/Libz.jl - andreasnoack opened this pull request about 8 years ago
liftOver capable IntervalCollection

github.com/BioJulia/Bio.jl - timbitz opened this pull request about 8 years ago
Add ABI files

github.com/BioJulia/BioFmtSpecimens - mgxm opened this pull request about 8 years ago
BigWig IO functions

github.com/BioJulia/Bio.jl - yuifu opened this issue about 8 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/WAHVectors.jl - gitter-badger opened this pull request about 8 years ago
Distributed and Threaded Parallelism in the BioJulia Suite

github.com/BioJulia/Bio.jl - ChrisRackauckas opened this issue about 8 years ago
HEADS UP: Breaking change in LightGraphs API

github.com/BioJulia/Bio.jl - sbromberger opened this issue about 8 years ago
Some intersect optimizations.

github.com/BioJulia/IntervalTrees.jl - dcjones opened this pull request over 8 years ago
The interval tree may be much slower than the nested containment list.

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 8 years ago
some trivial refactoring

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
do not use the using keyword

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
activate precompile

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
Incorrect function descriptions in README

github.com/BioJulia/Libz.jl - tlnagy opened this issue over 8 years ago
add inbounds macros

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
Performant mutation counting.

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 8 years ago
Furthur performance improvements to Bio.Var

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 8 years ago
support reading data from a pipe

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
export BGZFDataError

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
rename an internal field

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 8 years ago
Add julia 0.5 travis CI tests

github.com/BioJulia/Libz.jl - kdm9 opened this pull request over 8 years ago
Do no use Pkg.dir

github.com/BioJulia/Libz.jl - yuyichao opened this pull request over 8 years ago
Get nucleotide from BAM at specific mapped position

github.com/BioJulia/Bio.jl - bdeonovic opened this issue over 8 years ago
add BAM files

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request over 8 years ago
add SAM files

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request over 8 years ago
Offboarding & Onboarding

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 8 years ago
BioJulia Apps Package and Distribution

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 8 years ago
Genetic distance computation framework.

github.com/BioJulia/Bio.jl - SabrinaJaye opened this issue over 8 years ago
fix iteratorsize check

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
remove Compat.jl depndency

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
run TravisCI on Julia 0.5

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
Add labelled square matrix samples

github.com/BioJulia/BioFmtSpecimens - kdm9 opened this pull request over 8 years ago
Update Travis, add Appveyor

github.com/BioJulia/Codecs.jl - randyzwitch opened this pull request over 8 years ago
use dirname(@__FILE__) rather than Pkg.dir

github.com/BioJulia/BGZFStreams.jl - tkelman opened this pull request over 8 years ago
Multi-dimensionality?

github.com/BioJulia/IntervalTrees.jl - jwscook opened this issue over 8 years ago
rename checksum functions

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Newick and extended Newick from PhyloNetworks

github.com/BioJulia/Bio.jl - cecileane opened this issue over 8 years ago
add .2bit files

github.com/BioJulia/BioFmtSpecimens - bicycle1885 opened this pull request over 8 years ago
Added Base58 support, with tests.

github.com/BioJulia/Codecs.jl - ghost opened this pull request over 8 years ago
Low-level APIs

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Inspiration: argparse2cwl & cwl reference implementation

github.com/BioJulia/CWL.jl - mr-c opened this issue over 8 years ago
Deprecation warning fix

github.com/BioJulia/Codecs.jl - samoconnor opened this issue over 8 years ago
Incoroprate an FOSGAA global alignment

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 8 years ago
remove static macro

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Fix deprecations

github.com/BioJulia/Codecs.jl - abhijithch opened this pull request over 8 years ago
Fix deprecation errors

github.com/BioJulia/Libz.jl - malmaud opened this pull request over 8 years ago
do not wrap ZStream in RefValue

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Failed on both 0.4 and master

github.com/BioJulia/Libz.jl - sfchen opened this issue over 8 years ago
Progress of my project (sequence analysis)

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 8 years ago
remove switch

github.com/BioJulia/IndexableBitVectors.jl - bicycle1885 opened this pull request over 8 years ago
add Base.copy

github.com/BioJulia/IndexableBitVectors.jl - bicycle1885 opened this pull request over 8 years ago
Precompilation and small tweaks.

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
Install BLAST+ for AppVeyor (Windows).

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 8 years ago
Modernize package

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 8 years ago
Modified logos

github.com/BioJulia/assets - SabrinaJaye opened this pull request over 8 years ago
add more tests on exceptions

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Docs and Web

github.com/BioJulia/Libz.jl - SabrinaJaye opened this issue over 8 years ago
Precompile

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago
Vector sink fails

github.com/BioJulia/Libz.jl - bicycle1885 opened this issue over 8 years ago
Travis hangs on OS X

github.com/BioJulia/Bio.jl - bicycle1885 opened this issue over 8 years ago
Clean up documents and a few touch-ups.

github.com/BioJulia/Libz.jl - bicycle1885 opened this pull request over 8 years ago