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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Release/v0.4.0

github.com/BioJulia/XAM.jl - CiaranOMara opened this pull request 9 months ago
Bugfix: Escape reference to Automa in error function

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request 9 months ago
Correct typos in documentation

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request 9 months ago
Update docs with recipes pages

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request 9 months ago
Expand on documentation for `compatbits`

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request 9 months ago
XAM compatibilty for Automa very old, please update?

github.com/BioJulia/XAM.jl - mashu opened this issue 9 months ago
CompatHelper: bump compat for MolecularGraph to 0.16, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 9 months ago
Document string literal macro

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request 10 months ago
Correct some small typos in the docs

github.com/BioJulia/Kmers.jl - camilogarciabotero opened this pull request 10 months ago
CompatHelper: bump compat for BioStructures to 3, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 10 months ago
Breaking changes for v1

github.com/BioJulia/Kmers.jl - jakobnissen opened this pull request 10 months ago
Optimise complementation of nucleotides

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request 10 months ago
CompatHelper: bump compat for Meshes to 0.39, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 10 months ago
CompatHelper: bump compat for Meshes to 0.38, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 10 months ago
Local Outlier Factor

github.com/BioJulia/SingleCellProjections.jl - rasmushenningsson opened this pull request 10 months ago
Reason behind not using Muon/AnnData

github.com/BioJulia/SingleCellProjections.jl - aadimator opened this issue 10 months ago
MethodError: no method matching

github.com/BioJulia/SingleCellProjections.jl - akhst7 opened this issue 10 months ago
CompatHelper: bump compat for Hyperscript to 0.0.5, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 11 months ago
CompatHelper: bump compat for Meshes to 0.37, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 11 months ago
Clicking on protein plot does nothing with WGLMakie

github.com/BioJulia/BioMakie.jl - PGimenez opened this issue 11 months ago
CompatHelper: bump compat for Makie to 0.20, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 11 months ago
CompatHelper: bump compat for GLMakie to 0.9, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 11 months ago
CompatHelper: bump compat for Meshes to 0.36, (keep existing compat)

github.com/BioJulia/BioMakie.jl - github-actions[bot] opened this pull request 11 months ago
Update index.md

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request 11 months ago
fix doc links

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request 11 months ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request 11 months ago
redev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request 11 months ago
docs: Misc formatting and text fixes, add some internal links

github.com/BioJulia/Automa.jl - digital-carver opened this pull request 11 months ago
add Actions badges to README, correct existing badge and link

github.com/BioJulia/Automa.jl - digital-carver opened this pull request 11 months ago
Update Project.toml

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request 12 months ago
CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat)

github.com/BioJulia/SingleCellProjections.jl - github-actions[bot] opened this pull request 12 months ago
add empty! in read! method

github.com/BioJulia/GFF3.jl - jonathanBieler opened this pull request 12 months ago
How should one search for ORFs?

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue 12 months ago
Update issue and PR template to match BioJulia guidelines

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request 12 months ago
Update issue and PR template to match BioJulia guidelines

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request 12 months ago
Update issue and PR template to match BioJulia guidelines

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request 12 months ago
Update issue and PR template to match BioJulia guidelines

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request 12 months ago
add predicate method and tests

github.com/BioJulia/BioSequences.jl - camilogarciabotero opened this pull request 12 months ago
Create and export a generic test biosequence

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue 12 months ago
Accessors (like `GFF3.source`) should return missing instead of throwing exceptions

github.com/BioJulia/GFF3.jl - TheLostLambda opened this issue 12 months ago
Get this package back into PkgEval

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue almost 1 year ago
Run CI on Julia 1.5

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Bump Julia compat to 1.6

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
[RFC]: Add functions `guess_parse` and `guess_alphabet`

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Do not fail CI if codecov falls

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Define compat for Random

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Consider making Random a weak dep

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue about 1 year ago
Strip whitespaces from atom/element names

github.com/BioJulia/BioStructures.jl - babaid opened this issue about 1 year ago
Remove State struct

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this pull request about 1 year ago
Bump TranscodingStreams to 0.10

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request about 1 year ago
Bump TranscodingStreams to 0.10

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this pull request about 1 year ago
Bump TranscodingStreams to 0.10

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request about 1 year ago
CompatHelper: bump compat for "TranscodingStreams" to "0.10"

github.com/BioJulia/FASTX.jl - github-actions[bot] opened this pull request about 1 year ago
test doc examples and fix

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docs10

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docs and examples, prep 0.3

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
fix: Use svg for Logo

github.com/BioJulia/biojulia.github.io - Emiller88 opened this pull request about 1 year ago
Update Documenter.yml

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Update runtests.jl

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
CompatHelper: bump compat for PDBTools to 0.15, (keep existing compat)

github.com/BioJulia/ProteinSecondaryStructures.jl - github-actions[bot] opened this pull request about 1 year ago
Finish case scenarios + new devcontainer extension

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
Allow translation of LongSubSeq

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Remove downstream BioMakie CI

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Bump Documenter to 1.0

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request about 1 year ago
Bump Documenter to 1.0

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request about 1 year ago
Bump Documenter to 1.0

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request about 1 year ago
Update README.md

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Fix typo in tutorial.md

github.com/BioJulia/SingleCellProjections.jl - M-PERSIC opened this pull request about 1 year ago
Add research case scenario

github.com/BioJulia/BioJuliaDocs - M-PERSIC opened this pull request about 1 year ago
Add Base.print(::IO, ::Index)

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Make documentation more approachable

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request about 1 year ago
Drop ReTest test dep

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request about 1 year ago
Use new BioGenerics macros

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
add secondary structure Information

github.com/BioJulia/BioStructures.jl - shuuul opened this pull request about 1 year ago
Trouble loading `.gb` file downloaded via benchling

github.com/BioJulia/GenomicAnnotations.jl - adityanprasad opened this issue about 1 year ago
Add secondary structure prediction.

github.com/BioJulia/BioStructures.jl - shuuul opened this pull request about 1 year ago
docs figs

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docs2

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
make.jl sep

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Delete docs/src/msaselection.jl

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docdeploy5

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
decdeploy4

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docdeploy3

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docdeploy

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Tweak Tokenizer docs

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request about 1 year ago
Tokenizer improvements

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request about 1 year ago
docs and more

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
Dev

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
docs md tst

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
pages md change

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
add dbinfo gif, rm struc gridpos func

github.com/BioJulia/BioMakie.jl - kool7d opened this pull request about 1 year ago
CompatHelper: bump compat for HDF5 to 0.17, (keep existing compat)

github.com/BioJulia/SingleCellProjections.jl - github-actions[bot] opened this pull request about 1 year ago