BioJulia issues | Ecosyste.ms: OpenCollective

A couple julia 1.0 fixes.

github.com/BioJulia/BioCore.jl - dcjones opened this pull request over 6 years ago

A few more julia 1.0 fixes.

github.com/BioJulia/BioSymbols.jl - dcjones opened this pull request over 6 years ago

Error loading Bio

github.com/BioJulia/Bio.jl - JokingHero opened this issue over 6 years ago

Julia 1.0 compatibility fixes.

github.com/BioJulia/IndexableBitVectors.jl - dcjones opened this pull request over 6 years ago

Julia 1.0 compatibility fixes.

github.com/BioJulia/BioSymbols.jl - dcjones opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/BGZFStreams.jl - dcjones opened this pull request over 6 years ago

Changes for Julia v0.7 / v1.0

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

Version 1.0 changes

github.com/BioJulia/Libz.jl - SabrinaJaye opened this pull request over 6 years ago

Support Julia 0.7 & 1.0 and Drop 0.6

github.com/BioJulia/MMTF.jl - joelselvaraj opened this pull request over 6 years ago

Re: Reading GTF file

github.com/BioJulia/GFF3.jl - mdhe1248 opened this issue over 6 years ago

Julia 0.7/1.0 release

github.com/BioJulia/BioCore.jl - SabrinaJaye opened this pull request over 6 years ago

Updated for 1.0

github.com/BioJulia/Codecs.jl - mlhetland opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/IntervalTrees.jl - femtocleaner[bot] opened this pull request over 6 years ago

Drop 0.6

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 6 years ago

Merge version-1.0 branch into master

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 6 years ago

Support for Julia v0.7

github.com/BioJulia/MMTF.jl - joelselvaraj opened this pull request over 6 years ago

Compile fails on 0.7: deprecated types

github.com/BioJulia/IntervalTrees.jl - SDeans0 opened this issue over 6 years ago

update benchmark script

github.com/BioJulia/Automa.jl - bicycle1885 opened this pull request over 6 years ago

Support 0.7 and drop 0.6

github.com/BioJulia/Automa.jl - bicycle1885 opened this pull request over 6 years ago

Julia 1.0 compat

github.com/BioJulia/Codecs.jl - tanmaykm opened this pull request over 6 years ago

Test for 0.7 with travis

github.com/BioJulia/Automa.jl - SabrinaJaye opened this pull request over 6 years ago

Automa fails tests for julia v0.7

github.com/BioJulia/Automa.jl - SabrinaJaye opened this issue over 6 years ago

Add Alphabets

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

GeneticVariation.VCF.filter(reader) fails when encounters missing filter

github.com/BioJulia/GeneticVariation.jl - gtollefson opened this issue over 6 years ago

Typo

github.com/BioJulia/WaveletMatrices.jl - PallHaraldsson opened this pull request over 6 years ago

Tag a release

github.com/BioJulia/Libz.jl - davidanthoff opened this issue over 6 years ago

Fix n_samples method for BCF records

github.com/BioJulia/GeneticVariation.jl - SabrinaJaye opened this pull request over 6 years ago

Missing fernandogelin

github.com/BioJulia/BioServices.jl - mirestrepo opened this pull request over 6 years ago

fix CHANGELOG.md [ci skip]

github.com/BioJulia/BioServices.jl - bicycle1885 opened this pull request over 6 years ago

add some touch-ups to GGGnome (#12)

github.com/BioJulia/BioServices.jl - bicycle1885 opened this pull request over 6 years ago

Backwards compatibility with 0.2 releases for zstream init functions

github.com/BioJulia/Libz.jl - GunnarFarneback opened this pull request over 6 years ago

Better handling of HTTP errors in EUtils

github.com/BioJulia/BioServices.jl - mirestrepo opened this issue over 6 years ago

Project file updates

github.com/BioJulia/BioServices.jl - SabrinaJaye opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/Libz.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix Julia 0.7 deprecations.

github.com/BioJulia/Libz.jl - GunnarFarneback opened this pull request over 6 years ago

Fix escaping - and ^ inside character classes.

github.com/BioJulia/Automa.jl - dcjones opened this pull request over 6 years ago

Add ERCC92.gff3 example

github.com/BioJulia/BioFmtSpecimens - dcjones opened this pull request over 6 years ago

Add the alphabets

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this issue over 6 years ago

Remove use of Nullables

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

Add a benchmarks.jl file

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

Unify methods

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

add GGGenome

github.com/BioJulia/BioServices.jl - yuifu opened this pull request over 6 years ago

Add write and print methods

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago

Version trouble with IntervalTrees. Only able to install "BioAlignments" after removing package "Bio"

github.com/BioJulia/BioAlignments.jl - kopperud opened this issue over 6 years ago

Errors thrown when using symbols as pmap input with multiple Julia processes

github.com/BioJulia/BioSymbols.jl - rusty122 opened this issue over 6 years ago

Change functions to use XMLDict instead of EzXML

github.com/BioJulia/BioServices.jl - fernandogelin opened this pull request over 6 years ago

Support the mpileup format

github.com/BioJulia/BioAlignments.jl - SabrinaJaye opened this issue over 6 years ago

Fix deprecations

github.com/BioJulia/BGZFStreams.jl - femtocleaner[bot] opened this pull request over 6 years ago

Replace EzXML with LightXML

github.com/BioJulia/BioServices.jl - mirestrepo opened this issue over 6 years ago

Fix deprecations

github.com/BioJulia/BioAlignments.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/GeneticVariation.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/GenomicFeatures.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/BioTools.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/Phylogenies.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/Automa.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/WaveletMatrices.jl - femtocleaner[bot] opened this pull request over 6 years ago

Fix deprecations

github.com/BioJulia/GenomeBrowsers.jl - femtocleaner[bot] opened this pull request over 6 years ago

Updates to julia v0.7, drop v0.6

github.com/BioJulia/BioStructures.jl - jgreener64 opened this pull request over 6 years ago

Bio revamp

github.com/BioJulia/Bio.jl - SabrinaJaye opened this pull request over 6 years ago

Update package to current BioJulia ecosystem

github.com/BioJulia/GenomeBrowsers.jl - SabrinaJaye opened this pull request over 6 years ago

Project files

github.com/BioJulia/GenomeBrowsers.jl - SabrinaJaye opened this pull request over 6 years ago

Add flag test for alignment to the positive strand

github.com/BioJulia/BioAlignments.jl - phaverty opened this pull request over 6 years ago

Long CIGAR BAM and SAM

github.com/BioJulia/BioFmtSpecimens - SabrinaJaye opened this pull request over 6 years ago

Support for >65535 CIGAR op-codes in BAM files

github.com/BioJulia/BioAlignments.jl - SabrinaJaye opened this pull request over 6 years ago

New BAM files can support more than 65535 cigar opcodes

github.com/BioJulia/BioAlignments.jl - ghuls opened this issue over 6 years ago

Added retry_non_idempotent=true to HTTP post requests

github.com/BioJulia/BioServices.jl - mcmcgrath13 opened this pull request over 6 years ago

Change functions to use HTTP.jl package instead of deprecated Requests and HttpCommon.

github.com/BioJulia/BioServices.jl - fernandogelin opened this pull request over 6 years ago

Change functions to use HTTP.jl package instead of deprecated Requests and HttpCommon.

github.com/BioJulia/BioServices.jl - fernandogelin opened this issue over 6 years ago

Contributing file update

github.com/BioJulia/BioCore.jl - SabrinaJaye opened this pull request over 6 years ago