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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Release version 4.0

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this issue over 5 years ago
suspected typo in GFF3 Reader docs example

github.com/BioJulia/GFF3.jl - gtollefson opened this issue over 5 years ago
Project update

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 5 years ago
Register BioGenerics: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release version 1

github.com/BioJulia/BioGenerics.jl - SabrinaJaye opened this issue over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register FormatSpecimens: 1.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register FormatSpecimens: 1.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release first version

github.com/BioJulia/FormatSpecimens.jl - SabrinaJaye opened this issue over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register Pseudoseq: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register FASTX: 0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Basic De-Bruijn Graph type

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue over 5 years ago
Test issue

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this issue over 5 years ago
Fix reading BAM files from processes.

github.com/BioJulia/BioAlignments.jl - dcjones opened this pull request almost 6 years ago
LoadError when "using Phylogenies"

github.com/BioJulia/Phylogenies.jl - nmatzke opened this issue almost 6 years ago
add Project.toml

github.com/BioJulia/Automa.jl - bicycle1885 opened this pull request almost 6 years ago
Fix deprecations

github.com/BioJulia/Automa.jl - femtocleaner[bot] opened this pull request almost 6 years ago
Drop Julia 0.7 and update CI settings

github.com/BioJulia/Automa.jl - bicycle1885 opened this pull request almost 6 years ago
fix backslash escaping

github.com/BioJulia/Automa.jl - bicycle1885 opened this pull request almost 6 years ago
support Us to migrate from R lang (xcms) to Julia (BioJulia)

github.com/BioJulia/Bio.jl - dorvan opened this issue almost 6 years ago
Failing test: Interval Intersection

github.com/BioJulia/IntervalTrees.jl - yakir12 opened this issue almost 6 years ago
Fix deprecations

github.com/BioJulia/WaveletMatrices.jl - femtocleaner[bot] opened this pull request almost 6 years ago
Update for Julia 1.0

github.com/BioJulia/WaveletMatrices.jl - timbitz opened this pull request almost 6 years ago
ERROR: LoadError: GeneticVariation.VCF.Reader file format error on line 254 ~>";esv3585"

github.com/BioJulia/GeneticVariation.jl - gtollefson opened this issue almost 6 years ago
Fix typo in P() for TN93 and related models

github.com/BioJulia/SubstitutionModels.jl - kgori opened this pull request almost 6 years ago
Fix eigen

github.com/BioJulia/SubstitutionModels.jl - kgori opened this pull request almost 6 years ago
The "contributions guideline" page gives 404.

github.com/BioJulia/Contributing - pinardemetci opened this issue almost 6 years ago
Cannot use backslashes in (inverted) classes

github.com/BioJulia/Automa.jl - sjoelund opened this issue almost 6 years ago
Publish a new release ?

github.com/BioJulia/Bio.jl - jonathanBieler opened this issue almost 6 years ago
search function is undefined

github.com/BioJulia/Bio.jl - 229668880 opened this issue almost 6 years ago
Remove the error that is no longer an error; replace with a real file from SCOPe

github.com/BioJulia/BioFmtSpecimens - tanhevg opened this pull request almost 6 years ago
Allow truncated MODEL line in PDB files

github.com/BioJulia/BioStructures.jl - tanhevg opened this pull request almost 6 years ago
BioStructures fails to parse certain PDB files from SCOPe/ASTRAL archive

github.com/BioJulia/BioStructures.jl - tanhevg opened this issue almost 6 years ago
Update docs

github.com/BioJulia/BioGenerics.jl - SabrinaJaye opened this pull request almost 6 years ago
Add IO, Exceptions, and Automa modules

github.com/BioJulia/BioGenerics.jl - SabrinaJaye opened this pull request almost 6 years ago
Use TranscodingStreams for FASTA

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this pull request almost 6 years ago
find() instead of findall() in hts-files.md

github.com/BioJulia/BioAlignments.jl - aalexandersson opened this issue almost 6 years ago
Add more project files

github.com/BioJulia/GFF3.jl - SabrinaJaye opened this pull request almost 6 years ago
LocalAlignment find lower score than biopython/scikit-bio implementations

github.com/BioJulia/BioAlignments.jl - diegozea opened this issue almost 6 years ago
SkipmerFactory

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this pull request almost 6 years ago
Package should belongs to JuliaIO

github.com/BioJulia/Codecs.jl - o314 opened this issue almost 6 years ago
Package should belong to JuliaCollections

github.com/BioJulia/IntervalTrees.jl - o314 opened this issue almost 6 years ago
Inconsistent BAM flag accessor functions

github.com/BioJulia/XAM.jl - jakobnissen opened this issue about 6 years ago
Add new interfaces for manipulating auxilary BAM fields

github.com/BioJulia/XAM.jl - jakobnissen opened this issue about 6 years ago
Fix tests - continue #23

github.com/BioJulia/BioServices.jl - mirestrepo opened this pull request about 6 years ago
Tests fix

github.com/BioJulia/BioServices.jl - mcmcgrath13 opened this pull request about 6 years ago
Update eutils.jl

github.com/BioJulia/BioServices.jl - mcmcgrath13 opened this pull request about 6 years ago
Errors on master with testing and ci

github.com/BioJulia/BioServices.jl - SabrinaJaye opened this issue about 6 years ago
1.0.0 is out

github.com/BioJulia/BioTools.jl - PallHaraldsson opened this pull request about 6 years ago
Fix haskey(x::BAM.Record, y::String) (issue #20)

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this pull request about 6 years ago
:bug: Update covert(BAM.Record x::Vector{UInt8} to Julia v. 1.0

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this pull request about 6 years ago
LoadError: ArgumentError: Package GeneticVariation does not have Compat in its dependencies

github.com/BioJulia/GeneticVariation.jl - gtollefson opened this issue about 6 years ago
Debugging CI

github.com/BioJulia/MicrobiomePlots.jl - kescobo opened this pull request about 6 years ago
Base.convert(BAM.Record, x::Vector{UInt8}) not updated to Julia v 1.0

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this issue about 6 years ago
Cannot install the package for Julia 1.0.1

github.com/BioJulia/GeneticVariation.jl - kavir1698 opened this issue about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/SubstitutionModels.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/IntervalTrees.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/GeneticVariation.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/BioSymbols.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/BioStructures.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/BioCore.jl - mortenpi opened this pull request about 6 years ago
Cap Documenter.jl to 0.19 on Travis

github.com/BioJulia/BioAlignments.jl - mortenpi opened this pull request about 6 years ago
Bug in extracting auxiliary data fields from BAM file

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this issue about 6 years ago
:art: changed substitution models to be mutable with setrate! function

github.com/BioJulia/SubstitutionModels.jl - coraallensavietta opened this pull request about 6 years ago
1.0 Support

github.com/BioJulia/GeneticVariation.jl - dialvarezs opened this issue about 6 years ago
Fix eutils http body

github.com/BioJulia/BioServices.jl - mirestrepo opened this pull request over 6 years ago
Error tagging new release

github.com/BioJulia/GenomicAnnotations.jl - attobot opened this issue over 6 years ago
Error tagging new release

github.com/BioJulia/GenomicAnnotations.jl - attobot opened this issue over 6 years ago
SAM.Reader file format error

github.com/BioJulia/XAM.jl - lcmmichielsen opened this issue over 6 years ago
Some optimizations to tree intersection

github.com/BioJulia/IntervalTrees.jl - dcjones opened this pull request over 6 years ago
Fix VCF parsing of files output by GATK

github.com/BioJulia/GeneticVariation.jl - SabrinaJaye opened this pull request over 6 years ago
Error 414 Request-URI Too Large

github.com/BioJulia/BioServices.jl - mcmcgrath13 opened this issue over 6 years ago
Visualisation of contact and distance maps

github.com/BioJulia/BioStructures.jl - jgreener64 opened this pull request over 6 years ago
Adds support to Julia 1.0

github.com/BioJulia/BioTools.jl - fernandogelin opened this pull request over 6 years ago
Deprecated expressions in documents

github.com/BioJulia/GenomicFeatures.jl - yuifu opened this issue over 6 years ago
Try to avoid overflow on x86

github.com/BioJulia/IndexableBitVectors.jl - dcjones opened this pull request over 6 years ago
Julia 1.0 support

github.com/BioJulia/BioAlignments.jl - dcjones opened this pull request over 6 years ago
Various julia 1.0 updates.

github.com/BioJulia/GenomicFeatures.jl - dcjones opened this pull request over 6 years ago
WIP: distances

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 6 years ago
Fix LaTeX for P & Q matrix documentation

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 6 years ago
Adds support for Julia 1.0

github.com/BioJulia/BioServices.jl - fernandogelin opened this pull request over 6 years ago
ERROR: LoadError: GeneticVariation.VCF.Reader file format error - unexpected metainfo line from GATK command line

github.com/BioJulia/GeneticVariation.jl - gtollefson opened this issue over 6 years ago
Compilation error with Julia v1.0

github.com/BioJulia/SubstitutionModels.jl - kgori opened this issue over 6 years ago
Fix deprecations

github.com/BioJulia/BioStructures.jl - femtocleaner[bot] opened this pull request over 6 years ago
Version 1.0 updates

github.com/BioJulia/GenomicFeatures.jl - SabrinaJaye opened this pull request over 6 years ago
Plans for julia 1.0?

github.com/BioJulia/GenomicFeatures.jl - phaverty opened this issue over 6 years ago
Updates for Julia 0.7/1.0

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 6 years ago
run CI on Julia 1.0 as well

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 6 years ago
modernize inbounds style

github.com/BioJulia/IntervalTrees.jl - bicycle1885 opened this pull request over 6 years ago
Add conversion between DNA and RNA symbol types

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this pull request over 6 years ago
Release v0.1.0

github.com/BioJulia/MMTF.jl - joelselvaraj opened this pull request over 6 years ago
use CodecZlib in place of Libz

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 6 years ago
Fix deprecations

github.com/BioJulia/BGZFStreams.jl - bicycle1885 opened this pull request over 6 years ago
Develop

github.com/BioJulia/BGZFStreams.jl - CiaranOMara opened this pull request over 6 years ago
Julia 1.0 prep

github.com/BioJulia/Codecs.jl - SabrinaJaye opened this pull request over 6 years ago
Fix deprecations

github.com/BioJulia/IndexableBitVectors.jl - femtocleaner[bot] opened this pull request over 6 years ago