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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Efetch

github.com/BioJulia/BioServices.jl - anthonyagudelox3 opened this issue about 5 years ago
Merge tip-clipping from GSoC into GenomeGraphs framework

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request about 5 years ago
Add Project.toml and Manifest.toml

github.com/BioJulia/WaveletMatrices.jl - srgk26 opened this pull request about 5 years ago
New version: Microbiome v0.5.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request about 5 years ago
New package: BiobakeryUtils v0.2.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request about 5 years ago
Release/v2.0.0

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request about 5 years ago
Make AbstractInterval broadcastable

github.com/BioJulia/IntervalTrees.jl - CiaranOMara opened this issue about 5 years ago
Order of chromosomes in BigBed.Writer

github.com/BioJulia/BigBed.jl - jonathanBieler opened this issue about 5 years ago
add FASTA.identifier(record) example in docs

github.com/BioJulia/FASTX.jl - dehann opened this pull request about 5 years ago
add bioDBnet REST API support

github.com/BioJulia/BioServices.jl - thatRichman opened this pull request about 5 years ago
Bug in `Reader` with stream

github.com/BioJulia/FASTX.jl - Zymergen-phaverty opened this issue about 5 years ago
Add compatibility for Julia 1.3-rc4

github.com/BioJulia/Libz.jl - staticfloat opened this pull request about 5 years ago
link for stable docs is 404

github.com/BioJulia/ReadDatastores.jl - Zymergen-phaverty opened this issue about 5 years ago
Updates to :crossed_fingers: fix the documentation build

github.com/BioJulia/BioServices.jl - ibacher opened this pull request over 5 years ago
Dev

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request over 5 years ago
Unexpected behaviour when reading FASTA files with read!(reader, record)

github.com/BioJulia/FASTX.jl - harryscholes opened this issue over 5 years ago
New package: GenomicAnnotations v0.1.3

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Update EUtils manual

github.com/BioJulia/BioServices.jl - mimame opened this pull request over 5 years ago
Is FASTX.jl really only compatible with julia 1.1?

github.com/BioJulia/FASTX.jl - blaiseli opened this issue over 5 years ago
New version: Microbiome v0.5.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Add FormatSpecimens v1.0.1

github.com/BioJulia/BioJuliaRegistry - CiaranOMara opened this pull request over 5 years ago
Implement generic methods for commonly used functions and export them

github.com/BioJulia/FASTX.jl - harryscholes opened this pull request over 5 years ago
Info about upcoming removal of packages in the General registry

github.com/BioJulia/WaveletMatrices.jl - KristofferC opened this issue over 5 years ago
Info about upcoming removal of packages in the General registry

github.com/BioJulia/Phylogenies.jl - KristofferC opened this issue over 5 years ago
Info about upcoming removal of packages in the General registry

github.com/BioJulia/NaturalSelection.jl - KristofferC opened this issue over 5 years ago
Info about upcoming removal of packages in the General registry

github.com/BioJulia/FMIndexes.jl - KristofferC opened this issue over 5 years ago
Retry responses if we've hit the API limit

github.com/BioJulia/BioServices.jl - ibacher opened this pull request over 5 years ago
Info about upcoming removal of packages in the General registry

github.com/BioJulia/BioBridgeR.jl - KristofferC opened this issue over 5 years ago
Implement hashing and equality for Records

github.com/BioJulia/FASTX.jl - harryscholes opened this pull request over 5 years ago
Fix official julia documentation links

github.com/BioJulia/Contributing - mimame opened this pull request over 5 years ago
Add more builds to the Travis matrix

github.com/BioJulia/BioServices.jl - ibacher opened this pull request over 5 years ago
TOML parse check

github.com/BioJulia/FormatSpecimens.jl - CiaranOMara opened this pull request over 5 years ago
Filename typo

github.com/BioJulia/FormatSpecimens.jl - CiaranOMara opened this pull request over 5 years ago
Test on julia 1.2 in travis

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this pull request over 5 years ago
Setup autobuilds/autotests for the book code

github.com/BioJulia/biojulia_handbook - XVilka opened this issue over 5 years ago
Basic serial, in memory kmer counting

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request over 5 years ago
Dev

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request over 5 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/XAM.jl - gitter-badger opened this pull request over 5 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/BED.jl - gitter-badger opened this pull request over 5 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/BigWig.jl - gitter-badger opened this pull request over 5 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/BigBed.jl - gitter-badger opened this pull request over 5 years ago
Handle case where input is a TranscodingStream.

github.com/BioJulia/FASTX.jl - blaiseli opened this pull request over 5 years ago
Reading fastq from TranscodingStream

github.com/BioJulia/FASTX.jl - blaiseli opened this issue over 5 years ago
Master Topic List

github.com/BioJulia/biojulia_handbook - kescobo opened this issue over 5 years ago
Registering BioAlignments.jl to BioRegistry?

github.com/BioJulia/BioAlignments.jl - bicycle1885 opened this issue over 5 years ago
New package: ReadDatastores v0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release version 0.1.0

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this issue over 5 years ago
Linked read datastores

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request over 5 years ago
Get long reads working with sequence buffer

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request over 5 years ago
Add a Gitter chat badge to README.md

github.com/BioJulia/ReadDatastores.jl - gitter-badger opened this pull request over 5 years ago
Unify the datastore types under an abstract type

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request over 5 years ago
First draft of the SequenceBuffer

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request over 5 years ago
Long read datastrore

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request over 5 years ago
Update CI

github.com/BioJulia/BioAlignments.jl - CiaranOMara opened this pull request over 5 years ago
New version: FASTX v1.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release version 1.1

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this issue over 5 years ago
Add copyto! methods for copying record data to BioSequences

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this pull request over 5 years ago
New package: BioSequences v2.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Reading Newick files

github.com/BioJulia/Phylogenies.jl - MichielStock opened this issue over 5 years ago
Add standard data struct and importer

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request over 5 years ago
improve BAM.quality performance

github.com/BioJulia/BioAlignments.jl - jonathanBieler opened this pull request over 5 years ago
Allow multi-sequence BLAST against file or database

github.com/BioJulia/BioTools.jl - kdyrhage opened this pull request over 5 years ago
Performance of BAM.quality ?

github.com/BioJulia/XAM.jl - jonathanBieler opened this issue over 5 years ago
copyto!

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this issue over 5 years ago
when i try using bio julia i get this error message:

github.com/BioJulia/Bio.jl - waweruk2001 opened this issue over 5 years ago
Graph construction is currently subject to the circle problem

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue over 5 years ago
Error Correction

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Adversarial testing datasets: PhiX

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue over 5 years ago
Create basic SequenceDistanceGraph and DBG building based on Arda's code

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request over 5 years ago
Paired end read sequence datastores.

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this issue over 5 years ago
Sequence logo plots

github.com/BioJulia/BioAlignments.jl - cossio opened this issue over 5 years ago
New package: FASTX v1.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release version 1.0

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this issue over 5 years ago
Docs

github.com/BioJulia/MicrobiomePlots.jl - kescobo opened this pull request over 5 years ago
Register MicrobiomePlots: 0.2.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Generating Contigs using UG and Reads

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Gsoc/dbg

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this pull request over 5 years ago
Docs update

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 5 years ago
BCF.chrom always returns 1

github.com/BioJulia/GeneticVariation.jl - kaskarn opened this issue over 5 years ago
Docs fix

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 5 years ago
Docs no longer being generated

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this issue over 5 years ago
Expansion of constructors methods for Nucleic Acid Substitution Models

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 5 years ago
BioGenerics compat line prevents Pkg from adding

github.com/BioJulia/FASTX.jl - mmattocks opened this issue over 5 years ago
Create a ContactMap from a BitArray

github.com/BioJulia/BioStructures.jl - George3d6 opened this issue over 5 years ago
De-Bruijn Graph

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request over 5 years ago
Transition to Project.toml

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request over 5 years ago
Can't compiled by PackageCompile

github.com/BioJulia/BioAlignments.jl - aqzas opened this issue over 5 years ago
Checking the last updates

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Node merging and Edge Collapsing

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Move from REQUIRE to Project.toml

github.com/BioJulia/MicrobiomePlots.jl - kescobo opened this pull request over 5 years ago
Maybe a typo in SequenceGraph.jl

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Scale q

github.com/BioJulia/SubstitutionModels.jl - kgori opened this pull request over 5 years ago
Error when including BioSequenceGraphs.jl

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Typo in Links.jl

github.com/BioJulia/GenomeGraphs.jl - ardakdemir opened this issue over 5 years ago
Register BioSymbols: 4.0.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Register BioSymbols: 4.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
Release version 4.0.1

github.com/BioJulia/BioSymbols.jl - SabrinaJaye opened this issue over 5 years ago
Register Microbiome: 0.4.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago
could not spawn blast on windows

github.com/BioJulia/BioTools.jl - leejm516 opened this issue over 5 years ago
Register BioSymbols: 4.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request over 5 years ago