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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

New package: GFF3 v0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
New package: XAM v0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Add doctests to examples in docs

github.com/BioJulia/BioServices.jl - kescobo opened this issue almost 5 years ago
ERROR: type Response has no field data

github.com/BioJulia/BioServices.jl - aguang opened this issue almost 5 years ago
Multiple encodings for ReadDatastores

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request almost 5 years ago
New package: BBI v0.2.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
New package: BBI v0.1.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
New package: Indexes v0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
release/v0.1.0

github.com/BioJulia/Indexes.jl - CiaranOMara opened this pull request almost 5 years ago
v0.1.0

github.com/BioJulia/Indexes.jl - CiaranOMara opened this pull request almost 5 years ago
CompatHelper: bump compat for "StatsPlots" to "0.14"

github.com/BioJulia/MicrobiomePlots.jl - github-actions[bot] opened this pull request almost 5 years ago
New package: BioAlignments v2.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
New package: GenomicFeatures v2.0.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
New version: Microbiome v0.6.2

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Allow storage of both 2 bit and 4 bit encoded sequences

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request almost 5 years ago
New version: BioSequences v2.0.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Syntax error fix

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "Reexport" at version "0.2"

github.com/BioJulia/MicrobiomePlots.jl - github-actions[bot] opened this pull request almost 5 years ago
[WIP] Manual version bump

github.com/BioJulia/BioJuliaRegistry - kescobo opened this pull request almost 5 years ago
New version: FASTX v1.1.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Use symbols for names instead of strings

github.com/BioJulia/ReadDatastores.jl - SabrinaJaye opened this pull request almost 5 years ago
Install TagBot as a GitHub Action

github.com/BioJulia/GenomicAnnotations.jl - JuliaTagBot opened this pull request almost 5 years ago
CompatHelper: bump compat for "RecipesBase" to "0.8"

github.com/BioJulia/MicrobiomePlots.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "Libz" at version "1.0"

github.com/BioJulia/BBI.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioCore" at version "2.0"

github.com/BioJulia/BBI.jl - github-actions[bot] opened this pull request almost 5 years ago
Kmer count comparrisons

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue almost 5 years ago
FMIndex: ERROR: MethodError: Cannot `convert` an object of type String to an object of type Array{UInt8,1}

github.com/BioJulia/FMIndexes.jl - fpmenninger opened this issue almost 5 years ago
Allow BioSequences 2.0

github.com/BioJulia/BioAlignments.jl - DilumAluthge opened this pull request almost 5 years ago
Improve performance of bit-parallel counting methods

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this pull request almost 5 years ago
Minor corrections

github.com/BioJulia/biojulia.github.io - CiaranOMara opened this pull request almost 5 years ago
Update .travis.yml

github.com/BioJulia/Codecs.jl - logankilpatrick opened this pull request almost 5 years ago
Update README.md

github.com/BioJulia/Codecs.jl - logankilpatrick opened this pull request almost 5 years ago
Issue with readme example

github.com/BioJulia/Codecs.jl - logankilpatrick opened this issue almost 5 years ago
Release/v2.0.0

github.com/BioJulia/BioAlignments.jl - CiaranOMara opened this pull request almost 5 years ago
Use Artifacts.toml?

github.com/BioJulia/BioFmtSpecimens - kescobo opened this issue almost 5 years ago
CompatHelper: bump compat for "Automa" to "0.8"

github.com/BioJulia/BioAlignments.jl - github-actions[bot] opened this pull request almost 5 years ago
WorkSpace persistency and IO

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue almost 5 years ago
Release/v1.0.1

github.com/BioJulia/BioAlignments.jl - CiaranOMara opened this pull request almost 5 years ago
Support BioSymbols 3.x to enable Julia 1.0 to pass?

github.com/BioJulia/SubstitutionModels.jl - jangevaare opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioSymbols" at version "4.0"

github.com/BioJulia/SubstitutionModels.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "StaticArrays" at version "0.12"

github.com/BioJulia/SubstitutionModels.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: bump compat for "BioSequences" to "2.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: bump compat for "BioSequences" to "2.0"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "GenomicFeatures" at version "1.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioCore" at version "2.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BGZFStreams" at version "0.3"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioAlignments" at version "1.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BufferedStreams" at version "1.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "BioSequences" at version "2.0"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "Automa" at version "0.8"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 5 years ago
Release/v2.0.0

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request almost 5 years ago
CompatHelper: bump compat for "Colors" to "0.11"

github.com/BioJulia/MicrobiomePlots.jl - github-actions[bot] opened this pull request almost 5 years ago
CompatHelper: add new compat entry for "Reexport" at version "0.2"

github.com/BioJulia/MicrobiomePlots.jl - github-actions[bot] opened this pull request almost 5 years ago
New version: Microbiome v0.6.1

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Short Read Mapper

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this issue almost 5 years ago
New package: GenomeGraphs v0.1.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Run Registrator.jl to add this package to the registry.

github.com/BioJulia/WaveletMatrices.jl - gmassman opened this issue almost 5 years ago
CompatHelper: bump compat for "BioSequences" to "2.0"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request almost 5 years ago
New version: BiobakeryUtils v0.3.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
CompatHelper: bump compat for "Automa" to "0.8"

github.com/BioJulia/FASTX.jl - github-actions[bot] opened this pull request almost 5 years ago
Use the registered version of RegistryCI.jl

github.com/BioJulia/BioJuliaRegistry - DilumAluthge opened this pull request almost 5 years ago
New version: BioSymbols v4.0.3

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Temporary: use a custom branch of RegistryCI.jl

github.com/BioJulia/BioJuliaRegistry - DilumAluthge opened this pull request almost 5 years ago
New version: BioSymbols v4.0.2

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Change small lookup tables to Tuple

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request almost 5 years ago
Updates

github.com/BioJulia/MicrobiomePlots.jl - kescobo opened this pull request almost 5 years ago
Request for symmetries

github.com/BioJulia/BioStructures.jl - abahm opened this issue almost 5 years ago
New version: Microbiome v0.6.0

github.com/BioJulia/BioJuliaRegistry - BioJuliaBot opened this pull request almost 5 years ago
Set up AutoMerge on the BioJuliaRegistry

github.com/BioJulia/BioJuliaRegistry - DilumAluthge opened this issue about 5 years ago
Release v1.0.4

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request about 5 years ago
CompatHelper: bump compat for "FixedPointNumbers" to "0.7"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
CompatHelper: bump compat for "ColorTypes" to "0.9"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
Fix the bad syntax in a compat entry for `MicrobiomePlots`

github.com/BioJulia/BioJuliaRegistry - DilumAluthge opened this pull request about 5 years ago
CompatHelper: bump compat for "ColorTypes" to "0.9"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
CompatHelper: bump compat for "FixedPointNumbers" to "0.7"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
Add some CI and niceties

github.com/BioJulia/BioJuliaRegistry - SabrinaJaye opened this pull request about 5 years ago
Update Compat format

github.com/BioJulia/BioJuliaRegistry - kescobo opened this pull request about 5 years ago
Update compat format

github.com/BioJulia/BioJuliaRegistry - kescobo opened this pull request about 5 years ago
MMTF file examples

github.com/BioJulia/BioFmtSpecimens - jgreener64 opened this pull request about 5 years ago
We forgot about BioTutorials.jl

github.com/BioJulia/biojulia_handbook - kescobo opened this issue about 5 years ago
CompatHelper: bump compat for "ColorTypes" to "0.9"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
CompatHelper: bump compat for "FixedPointNumbers" to "0.7"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request about 5 years ago
Tutorials are quite outdated

github.com/BioJulia/BioTutorials - aleighbrown opened this issue about 5 years ago
Update RNA-Seq Coverage.ipynb

github.com/BioJulia/BioTutorials - aleighbrown opened this pull request about 5 years ago
Fix SAM.alignlength(record::Record)::Int

github.com/BioJulia/BioAlignments.jl - herbstk opened this pull request about 5 years ago
Incorrect calculation of alignment length in SAM.alignlength()

github.com/BioJulia/BioAlignments.jl - herbstk opened this issue about 5 years ago
CompatHelper: add new compat entry for "ReadDatastores" at version "0.1"

github.com/BioJulia/GenomeGraphs.jl - github-actions[bot] opened this pull request about 5 years ago
CompatHelper: add new compat entry for "FASTX" at version "1.1"

github.com/BioJulia/GenomeGraphs.jl - github-actions[bot] opened this pull request about 5 years ago
CompatHelper: add new compat entry for "Automa" at version "0.8"

github.com/BioJulia/GenomeGraphs.jl - github-actions[bot] opened this pull request about 5 years ago
Add draft of MerTools submodule

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request about 5 years ago
Reorganise some code into "Graphs" submodule

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request about 5 years ago
Support for Julia 1.0+

github.com/BioJulia/FMIndexes.jl - gmassman opened this pull request about 5 years ago
@info instead of info

github.com/BioJulia/BioAlignments.jl - tanhevg opened this pull request about 5 years ago
do not import Base: select

github.com/BioJulia/WaveletMatrices.jl - JeffreySarnoff opened this pull request about 5 years ago
release/v1.0.1

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request about 5 years ago
Error using Libz on Windows, no zlib1 found

github.com/BioJulia/Libz.jl - kool7d opened this issue about 5 years ago
Error using BioStructures, no "libz1" module found

github.com/BioJulia/BioStructures.jl - kool7d opened this issue about 5 years ago
Fix typo in Strand function

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request about 5 years ago
Implement draft of perfect circle resolution for the dbg constructor

github.com/BioJulia/GenomeGraphs.jl - SabrinaJaye opened this pull request about 5 years ago
Failing to match \\ in the beginning of the string

github.com/BioJulia/Automa.jl - racinmat opened this issue about 5 years ago