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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

v0.6.0

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
Updated documentation links

github.com/BioJulia/BioServices.jl - BioTurboNick opened this pull request almost 4 years ago
License notice in header points to broken URL

github.com/BioJulia/BioServices.jl - BioTurboNick opened this issue almost 4 years ago
WIP: Add EMBL-EBI Proteins REST API

github.com/BioJulia/BioServices.jl - BioTurboNick opened this pull request almost 4 years ago
Constrain automa upper bound

github.com/BioJulia/XAM.jl - kescobo opened this pull request almost 4 years ago
Disable breaking change: check for ambiguity

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
Broken with Automa 0.8.1

github.com/BioJulia/XAM.jl - dialvarezs opened this issue almost 4 years ago
Interface

github.com/BioJulia/GenomicAnnotations.jl - kdyrhage opened this pull request almost 4 years ago
Modernize docs and CI

github.com/BioJulia/BioServices.jl - kescobo opened this pull request almost 4 years ago
TagBot trigger issue

github.com/BioJulia/Automa.jl - JuliaTagBot opened this issue almost 4 years ago
v0.5.2 release

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
add tagbot

github.com/BioJulia/Automa.jl - kescobo opened this pull request almost 4 years ago
bump version

github.com/BioJulia/Automa.jl - kescobo opened this pull request almost 4 years ago
Update CI and docs to github actions

github.com/BioJulia/BioServices.jl - kescobo opened this issue almost 4 years ago
FASTQ example added

github.com/BioJulia/FASTX.jl - BioTurboNick opened this pull request almost 4 years ago
Model good behavior with do block syntax

github.com/BioJulia/FASTX.jl - BioTurboNick opened this pull request almost 4 years ago
Work on deploying docs via github actions

github.com/BioJulia/Automa.jl - kescobo opened this pull request almost 4 years ago
Add actually working CI

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this issue almost 4 years ago
Roadmap to v1.0

github.com/BioJulia/Automa.jl - jakobnissen opened this issue almost 4 years ago
Add Documenter-based automatic documentation hosting

github.com/BioJulia/Automa.jl - jakobnissen opened this issue almost 4 years ago
Remove DataStructures dependency

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
Fix CI

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
Remove DataStructures deps

github.com/BioJulia/Automa.jl - jakobnissen opened this issue almost 4 years ago
Add docs for :simd generator

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
Change equal to egal for nothing

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/Codecs.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/Libz.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/GenomeBrowsers.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/Phylogenies.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/NaturalSelection.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/BioBridgeR.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/Kmers.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/juju - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/Dat.jl - jakobnissen opened this issue almost 4 years ago
⚠️ Is this package still maintained? ⚠️

github.com/BioJulia/CWL.jl - jakobnissen opened this issue almost 4 years ago
FileIO support

github.com/BioJulia/Libz.jl - karlwessel opened this issue almost 4 years ago
push 0.5.1 release

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
Remove iteration of BioSymbol

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request almost 4 years ago
Does this pakcage need an interface?

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this issue almost 4 years ago
Remove iteration of BioSymbol

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this issue almost 4 years ago
Streamline find functions to behave like Base's

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue almost 4 years ago
Check interfaces, remove NotImplemented errors

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue almost 4 years ago
Fixup tests before v3

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue almost 4 years ago
Browsing the documentation

github.com/BioJulia/XAM.jl - george-githinji opened this issue almost 4 years ago
CompatHelper: bump compat for "JLD2" to "0.4"

github.com/BioJulia/PopGen.jl_archive - github-actions[bot] opened this pull request almost 4 years ago
release 0.5.1

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request almost 4 years ago
Prepare for minor release

github.com/BioJulia/BioAlignments.jl - alyst opened this pull request almost 4 years ago
Improve debugging of Automa

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request almost 4 years ago
BoundsError: attempt to access 1-element Array{BGZFStreams.Block,1} at index [2]

github.com/BioJulia/BGZFStreams.jl - CiaranOMara opened this issue almost 4 years ago
TagBot trigger issue

github.com/BioJulia/Indexes.jl - JuliaTagBot opened this issue almost 4 years ago
"master" vs "develop" branches

github.com/BioJulia/BioAlignments.jl - alyst opened this issue almost 4 years ago
Remove BioJuliaRegistry

github.com/BioJulia/BioAlignments.jl - alyst opened this pull request almost 4 years ago
New CI based on GH-actions

github.com/BioJulia/BioAlignments.jl - alyst opened this pull request almost 4 years ago
Use SIMD code generator

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request almost 4 years ago
fix file import functions (breaking)

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
Improve inferrability

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request almost 4 years ago
Change small lookup tables to Tuple

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request almost 4 years ago
issue with concatenated bgzip

github.com/BioJulia/BGZFStreams.jl - rulixxx opened this issue almost 4 years ago
Add quality and sequence iterator

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request almost 4 years ago
Switch to CodecBGZF

github.com/BioJulia/XAM.jl - jakobnissen opened this pull request almost 4 years ago
Switch to CodecBGZF

github.com/BioJulia/Indexes.jl - jakobnissen opened this pull request almost 4 years ago
Implement broadcasting for biosequences

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue almost 4 years ago
TagBot trigger issue

github.com/BioJulia/GenomicFeatures.jl - JuliaTagBot opened this issue almost 4 years ago
CompatHelper: bump compat for "DataStructures" to "0.18"

github.com/BioJulia/GenomicFeatures.jl - github-actions[bot] opened this pull request almost 4 years ago
Improve inferrability of writer kwargs

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this pull request almost 4 years ago
Obscure error when aligning sequences with gaps

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this issue almost 4 years ago
CompatHelper: bump compat for "JLD2" to "0.4"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request almost 4 years ago
CompatHelper: bump compat for "JLD2" to "0.4"

github.com/BioJulia/PopGen.jl_archive - github-actions[bot] opened this pull request almost 4 years ago
pull 0.4.5 into release

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
Release

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request almost 4 years ago
merge release branch upstream

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request almost 4 years ago
Merge fork dev into biojulia dev

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request almost 4 years ago
merge 0.4.4 into release

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
bugfixes for 0.4.3

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
CompatHelper: bump compat for "PooledArrays" to "1.1"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request almost 4 years ago
CompatHelper: bump compat for "PooledArrays" to "1.0"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request almost 4 years ago
Update for PooledArrays 1.0 release

github.com/BioJulia/PopGen.jl - quinnj opened this pull request almost 4 years ago
admin for this repo

github.com/BioJulia/PopGen.jl_archive - pdimens opened this issue almost 4 years ago
Performance comparison with Rust

github.com/BioJulia/FASTX.jl - jonathanBieler opened this issue almost 4 years ago
Doc link is broken

github.com/BioJulia/KmerAnalysis.jl - jonathanBieler opened this issue about 4 years ago
consolidate file io APIs to use multiple dispatch

github.com/BioJulia/PopGen.jl - pdimens opened this issue about 4 years ago
Add do syntax to AbstractFormattedIO built from other IO objects

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this pull request about 4 years ago
merge docs into BioJulia

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request about 4 years ago
merge docs into BioJulia

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request about 4 years ago
merge pdimens/Kinship in BioJulia

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request about 4 years ago
merge pdimens fork into BioJulia

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request about 4 years ago
merge pdimens fork into BioJulia

github.com/BioJulia/PopGen.jl_archive - pdimens opened this pull request about 4 years ago
CompatHelper: add new compat entry for "RandomNumbers" at version "1.4"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago
Safe with invalid UTF-8?

github.com/BioJulia/Automa.jl - cmcaine opened this issue about 4 years ago
CompatHelper: bump compat for "StaticArrays" to "1.0"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago
Example of inline routing of a HTTP request while parsing it

github.com/BioJulia/Automa.jl - richiejp opened this pull request about 4 years ago
TagBot trigger issue

github.com/BioJulia/GenomicAnnotations.jl - JuliaTagBot opened this issue about 4 years ago
Replace rand() and sample() use of MT

github.com/BioJulia/PopGen.jl - pdimens opened this issue about 4 years ago
bump to 0.4.2

github.com/BioJulia/PopGen.jl - pdimens opened this pull request about 4 years ago
CompatHelper: add new compat entry for "GraphPlot" at version "0.4"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago
CompatHelper: add new compat entry for "Clustering" at version "0.14"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago
CompatHelper: add new compat entry for "LightGraphs" at version "1.3"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago
Failiure on 32 bit systems

github.com/BioJulia/IndexableBitVectors.jl - SabrinaJaye opened this issue about 4 years ago
CompatHelper: bump compat for "DataFrames" to "0.22"

github.com/BioJulia/BioStructures.jl - github-actions[bot] opened this pull request about 4 years ago
CompatHelper: bump compat for "JLD2" to "0.3"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request about 4 years ago