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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

CompatHelper: add new compat entry for "StaticArrays" at version "1"

github.com/BioJulia/PopGenCore.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: add new compat entry for "StatsBase" at version "0.33"

github.com/BioJulia/PopGenCore.jl - github-actions[bot] opened this pull request over 3 years ago
Make macro literals dynamic

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request over 3 years ago
Default to dynamic allocation for string literals

github.com/BioJulia/BioSequences.jl - jakobnissen opened this issue over 3 years ago
[feature] update PopData show

github.com/BioJulia/PopGenCore.jl - pdimens opened this issue over 3 years ago
[feature] Rename `meta` and `loci` to `metadata` and `genodata`

github.com/BioJulia/PopGenCore.jl - pdimens opened this issue over 3 years ago
[feature] meta df columns as direct objects of PooledArrays pools from loci df

github.com/BioJulia/PopGenCore.jl - pdimens opened this issue over 3 years ago
[feature] remove `release` branch

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
add PLINK file format support

github.com/BioJulia/PopGenCore.jl - pdimens opened this issue over 3 years ago
[bug] VCF header not found

github.com/BioJulia/PopGenCore.jl - pdimens opened this issue over 3 years ago
[feature] Split file IO into separate package

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
[feature] add PLINK file import support

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
Multiple selection and Merge Selection

github.com/BioJulia/BioStructures.jl - Wang-Lin-boop opened this issue over 3 years ago
CompatHelper: add new compat entry for "NaturalSort" at version "1"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request over 3 years ago
Get reference and query from `PairwiseAlignment`

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this issue over 3 years ago
FASTX.Records need a single-line representation

github.com/BioJulia/FASTX.jl - jakobnissen opened this issue over 3 years ago
CompatHelper: bump compat for "BioSymbols" to "5"

github.com/BioJulia/BioSequences.jl - github-actions[bot] opened this pull request over 3 years ago
Should we make BioSequences <: AbstractVector?

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this issue over 3 years ago
push 0.6.5 to release

github.com/BioJulia/PopGen.jl - pdimens opened this pull request over 3 years ago
Add test files or https://github.com/BioJulia/XAM.jl/issues/31

github.com/BioJulia/FormatSpecimens.jl - CiaranOMara opened this pull request over 3 years ago
Move to version 0.1.1

github.com/BioJulia/BioGenerics.jl - jakobnissen opened this pull request over 3 years ago
Implement broadcasting for BioSequences

github.com/BioJulia/BioSequences.jl - SabrinaJaye opened this pull request over 3 years ago
[bug] export keep and keep!

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
[feature] consolidate file import info text

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
[bug] PopData.meta.name incorrectly typed from vcf import

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
[bug] isbiallelic(::PopData) returns incorrect answer

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
[feature] add NaturalSort.jl as dep

github.com/BioJulia/PopGen.jl - pdimens opened this issue over 3 years ago
Install ERROR: Unsatisfiable requirements detected for package BioSequences

github.com/BioJulia/XAM.jl - egoecho opened this issue over 3 years ago
Inconsistent when aligning distinct sequence types

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this issue over 3 years ago
Allow compact printing of alignments

github.com/BioJulia/BioAlignments.jl - jakobnissen opened this pull request over 3 years ago
Implement translate for codons

github.com/BioJulia/Kmers.jl - jakobnissen opened this issue over 3 years ago
Maintenance

github.com/BioJulia/BGZFStreams.jl - CiaranOMara opened this pull request over 3 years ago
Implement reverse translation (AminoAcid -> Codon)

github.com/BioJulia/BioSequences.jl - BeastyBlacksmith opened this issue over 3 years ago
Transcode between FASTQ & FASTA files

github.com/BioJulia/FASTX.jl - SabrinaJaye opened this pull request over 3 years ago
Allow trailing whitespace in sequences

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request over 3 years ago
TagBot trigger issue

github.com/BioJulia/FASTX.jl - JuliaTagBot opened this issue over 3 years ago
Incorrect handling of missing values

github.com/BioJulia/BED.jl - lysogeny opened this issue over 3 years ago
Increment version

github.com/BioJulia/GFF3.jl - CiaranOMara opened this pull request over 3 years ago
TagBot trigger issue

github.com/BioJulia/GFF3.jl - JuliaTagBot opened this issue over 3 years ago
Release/v0.1.1

github.com/BioJulia/GFF3.jl - CiaranOMara opened this pull request over 3 years ago
CompatHelper: bump compat for "Indexes" to "0.2"

github.com/BioJulia/GFF3.jl - github-actions[bot] opened this pull request over 3 years ago
Position of unmapped mate

github.com/BioJulia/XAM.jl - CiaranOMara opened this issue over 3 years ago
can you add some functions to BAM.Reader?

github.com/BioJulia/XAM.jl - panxiaoguang opened this issue over 3 years ago
Avoid BoundsError when determining virtualoffset.

github.com/BioJulia/BGZFStreams.jl - lysogeny opened this pull request over 3 years ago
Unexpected behaviour for `GFF3.strand`

github.com/BioJulia/GFF3.jl - lysogeny opened this issue over 3 years ago
Bump compatibility

github.com/BioJulia/BED.jl - CiaranOMara opened this pull request over 3 years ago
CompatHelper: bump compat for "Indexes" to "0.2"

github.com/BioJulia/BED.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for "ColorTypes" to "0.11"

github.com/BioJulia/BED.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for "FixedPointNumbers" to "0.8"

github.com/BioJulia/BED.jl - github-actions[bot] opened this pull request over 3 years ago
TagBot trigger issue

github.com/BioJulia/BED.jl - JuliaTagBot opened this issue over 3 years ago
CompatHelper: bump compat for "BioSymbols" to "5"

github.com/BioJulia/BioAlignments.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for "BioSymbols" to "5"

github.com/BioJulia/BioStructures.jl - github-actions[bot] opened this pull request over 3 years ago
TagBot trigger issue

github.com/BioJulia/BioSymbols.jl - JuliaTagBot opened this issue over 3 years ago
Release/v2.1.0

github.com/BioJulia/GenomicFeatures.jl - CiaranOMara opened this pull request over 3 years ago
Fix: CodecBGZF.virtualoffset -> CodecBGZF.VirtualOffset

github.com/BioJulia/Indexes.jl - Marlin-Na opened this pull request over 3 years ago
CompatHelper: bump compat for "Indexes" to "0.2"

github.com/BioJulia/BED.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for "ColorTypes" to "0.11"

github.com/BioJulia/BED.jl - github-actions[bot] opened this pull request over 3 years ago
changed text handling from convert() to Vector{UInt8} constructor

github.com/BioJulia/FMIndexes.jl - tsgouros opened this pull request over 3 years ago
Code is incompatible with new GenomicFeatures

github.com/BioJulia/BED.jl - rulixxx opened this issue over 3 years ago
Intersection behaviour for points

github.com/BioJulia/IntervalTrees.jl - mschauer opened this issue over 3 years ago
Add range and strand specification

github.com/BioJulia/BioFetch.jl - BioTurboNick opened this pull request over 3 years ago
Converting FASTQ to FASTA

github.com/BioJulia/FASTX.jl - jtackm opened this issue over 3 years ago
Allow trailing newlines for FASTQ files

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request over 3 years ago
malformed FASTQ file

github.com/BioJulia/FASTX.jl - jtackm opened this issue over 3 years ago
Multiple alignment manipulation

github.com/BioJulia/BioAlignments.jl - BioTurboNick opened this issue over 3 years ago
CompatHelper: bump compat for "MultipleTesting" to "0.5"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request over 3 years ago
Call fill_ambiguous for FASTQ in all cases

github.com/BioJulia/FASTX.jl - motorny opened this pull request over 3 years ago
Add Project.toml

github.com/BioJulia/BGZFStreams.jl - lysogeny opened this pull request over 3 years ago
Missing `Project.toml`?

github.com/BioJulia/BGZFStreams.jl - lysogeny opened this issue over 3 years ago
Version 5

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this issue over 3 years ago
Removed Automa parsing

github.com/BioJulia/BioSymbols.jl - jakobnissen opened this pull request over 3 years ago
add DataFrames 1.x compat

github.com/BioJulia/PopGen.jl - pdimens opened this pull request over 3 years ago
[feature] Compatibility with DataFrames v1

github.com/BioJulia/PopGen.jl - hannesbecher opened this issue over 3 years ago
CompatHelper: bump compat for "DataFrames" to "1.1"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request over 3 years ago
[WIP] Updates

github.com/BioJulia/BioTutorials - kescobo opened this pull request over 3 years ago
CompatHelper: bump compat for "Distributions" to "0.25"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request over 3 years ago
Multi-bytes characters trigger actions multiple times

github.com/BioJulia/Automa.jl - Kolaru opened this issue over 3 years ago
Update interface to version 3.

github.com/BioJulia/BioSequences.jl - jakobnissen opened this pull request over 3 years ago
Fix execute (issue 78)

github.com/BioJulia/Automa.jl - jakobnissen opened this pull request over 3 years ago
Convert to Franklin.jl?

github.com/BioJulia/biojulia.github.io - kescobo opened this issue over 3 years ago
CompatHelper: bump compat for "Indexes" to "0.2"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request over 3 years ago
Merge code for Kmer type from BioSequences to this package

github.com/BioJulia/Kmers.jl - SabrinaJaye opened this pull request over 3 years ago
`Automa.execute` gives wrong result in some case

github.com/BioJulia/Automa.jl - Kolaru opened this issue over 3 years ago
CompatHelper: bump compat for "DataFrames" to "1.0"

github.com/BioJulia/BioStructures.jl - github-actions[bot] opened this pull request over 3 years ago
CompatHelper: bump compat for "DataFrames" to "1.0"

github.com/BioJulia/PopGen.jl - github-actions[bot] opened this pull request over 3 years ago
can you add a function merge?

github.com/BioJulia/GenomicFeatures.jl - panxiaoguang opened this issue over 3 years ago
Same char used in two different patterns of an alternation

github.com/BioJulia/Automa.jl - Kolaru opened this issue over 3 years ago
Disallow record construction from anything

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request over 3 years ago
Fix header code

github.com/BioJulia/FASTX.jl - jakobnissen opened this pull request over 3 years ago
TagBot trigger issue

github.com/BioJulia/BioMakie.jl - JuliaTagBot opened this issue over 3 years ago
TagBot trigger issue

github.com/BioJulia/BioServices.jl - JuliaTagBot opened this issue almost 4 years ago
update license links

github.com/BioJulia/BioServices.jl - kescobo opened this pull request almost 4 years ago
Add ULMS token to run tests

github.com/BioJulia/BioServices.jl - kescobo opened this issue almost 4 years ago
Error when loading genebank file from NCBI

github.com/BioJulia/GenomicAnnotations.jl - TorkelE opened this issue almost 4 years ago
CompatHelper: bump compat for "Indexes" to "0.2"

github.com/BioJulia/XAM.jl - github-actions[bot] opened this pull request almost 4 years ago
TagBot trigger issue

github.com/BioJulia/XAM.jl - JuliaTagBot opened this issue almost 4 years ago
Common Malformed File Exception

github.com/BioJulia/BioGenerics.jl - CiaranOMara opened this issue almost 4 years ago
move conditionals to Conditionals.jl

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
fix hudson fst calls

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago
Update FstMethods.jl

github.com/BioJulia/PopGen.jl - pdimens opened this pull request almost 4 years ago