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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
github.com/BioJulia/ragel - f6cb3687594dcca3a4ebd46354936f54b9bf33d3 authored almost 18 years ago
statements are no longer interpreted in rlgen-dot. Since they have no meaning
in this generator, ...
the option processing. Renamed and updated the man page for the backend. Added
man pages for the ...
github.com/BioJulia/ragel - ca1d12b0fde5f477d5f00bfc697e1e4fcef04a3c authored almost 18 years ago
github.com/BioJulia/ragel - c98a2e8e38fa93d6308d897cf2ff20fa70378ed4 authored almost 18 years ago
github.com/BioJulia/ragel - 43f2c3266ce9962915991f455897d61c3ff71e2c authored almost 18 years ago
Updated the machine name and alphtype in atoi3 to reflect the fact that it is a
ruby test.
string, allowing it to be interpreted. ARRAY_ITEM() now accepts a string.
github.com/BioJulia/ragel - 44863d3e7c8321ea5a563a23b21c779a6aa41060 authored almost 18 years agonow accepts a string.
github.com/BioJulia/ragel - 3f7ba043438b9c20804c636ff82e70fe889f8a02 authored almost 18 years agoalphabet type anymore.
github.com/BioJulia/ragel - 322d220ed1459f45685e0c20bdcf4493d49b9866 authored almost 18 years agothe parser exists test. The initialization of ignoreSection was flipped to fix
a bug which inhibi...
github.com/BioJulia/ragel - c50cea5fdd2a5e5a89055fe31d517d8e0112542c authored almost 18 years ago
github.com/BioJulia/ragel - dbe28d5ca0771ad4c17c674f131b48b9b6d25398 authored almost 18 years ago
functions are created, with each function only handling a max number of
elements. This compiles t...
github.com/BioJulia/ragel - 3eba666c8bb7702951b335d477081a29a4e5d407 authored almost 18 years ago
github.com/BioJulia/ragel - cb26ad3a439ac44351a5fd0b69a4995a5b2a6689 authored almost 18 years ago
trying to create empty machines with [] and // and /a[]b/.
github.com/BioJulia/ragel - 08aa5af9b2a22c9613f8ef663ebb6653d24bd4cc authored almost 18 years agoGoedeke.
github.com/BioJulia/ragel - a6fda53d8b900914d384c78a44d923e72cd7368a authored almost 18 years agogithub.com/BioJulia/ragel - 003d3fb7bec5630dc1e1071b421416a0b8e5be3f authored almost 18 years ago
function. With that, a definite memory leak is fixed.
github.com/BioJulia/ragel - 796271ec4a3e07a304be345374481f4b409d92b6 authored almost 18 years agogithub.com/BioJulia/ragel - 866750a91ee29a9f956daa0893aebc2db2437de4 authored almost 18 years ago
github.com/BioJulia/ragel - 8194b62b5f22df7c5e574b9dbbe5db1f5a669d61 authored almost 18 years ago
github.com/BioJulia/ragel - a5d1e087dcaf6d45905c12669bb23710488b3cc8 authored almost 18 years ago
tests.
github.com/BioJulia/ragel - 03eb3fb9bf2cdedd046b1ff33fe9dee48104c5af authored almost 18 years agogithub.com/BioJulia/ragel - ca204655497230fbb60db118faeb4f332024d219 authored almost 18 years ago
The genLineDirective function in rlcodegen must guard against graphviz dotfile
generation.
If th...
github.com/BioJulia/ragel - de43274325585033443e3c4013b178993ef44812 authored almost 18 years agogithub.com/BioJulia/ragel - b932e04936fee5bb32ebd4946c4b05223c97d0c1 authored almost 18 years ago
use hidden commands.
github.com/BioJulia/ragel - 57de5fb340781e27e2fe4c7d617c4678dfb3b863 authored almost 18 years agoACT(). Now fixed.
github.com/BioJulia/ragel - 2e9d82636b375908d28c3d143a74fecdf90a6473 authored almost 18 years agofirst final states from the write data statement in order to avoid a gcc
compiler warnings. For a...
Leading code which is common to all finishRagelDef() functions has been moved
to the parser clas...
to the hostLangType and hostLang variables is now handled by the redfsm.a
library. The code gener...
generation.
github.com/BioJulia/ragel - 9f7716b8f47fbf2dcf67512853199f6c20ae91d9 authored almost 18 years agogithub.com/BioJulia/ragel - 7f39dcc949699b7166065dbe60ed3af4d2fecd05 authored almost 18 years ago
work done in the frontend.
github.com/BioJulia/ragel - a6a182124c6da5ace4c8c7c63e9e0a53aa2049ff authored almost 18 years agogithub.com/BioJulia/ragel - 3e863b44507421de99dd74fe184aae5496104fed authored almost 18 years ago
error state id is passed using the <error_state> tag.
github.com/BioJulia/ragel - 50b093f3d680cce92164046633e1f6037b517d2f authored almost 18 years agodefault extension.
github.com/BioJulia/ragel - a2af7885539303a36818e90a8084db0cb890bdf8 authored almost 18 years agostarting at 0. The state numbers in the XML file are now read and used to set
the state id. They ...
based on final state status before assigning ids.
github.com/BioJulia/ragel - 174ca7231615d6643c462bbda6d688727d2fb1b2 authored about 18 years agopatch from Victor.
github.com/BioJulia/ragel - bc74b74eeeb0349794dc1f3bfef3b27834cdd7f7 authored about 18 years agothe Java code generator written in the framework, then merged in the code
generation that Victor ...
and codeStyle options from the java code generator.
github.com/BioJulia/ragel - 9804340d1975227abc19b17072b4f6590809f031 authored about 18 years agogithub.com/BioJulia/ragel - 407d236e86339f8d870a65fb286ccd6abb7c9241 authored about 18 years ago
runtests script to use the new filename for the java code generator.
github.com/BioJulia/ragel - a11f5b3ec692e5fc99fbd015a31e7b1231c37fb1 authored about 18 years agogithub.com/BioJulia/ragel - e592d9b647f10bcf02f5eb8df28a36d66755f97e authored about 18 years ago
github.com/BioJulia/ragel - f772ccadb81b3aa36cdd57cee29307df23df9b84 authored about 18 years ago
github.com/BioJulia/ragel - 29f1c2a7225478e7557d341b3f31fcbec95be416 authored about 18 years ago
github.com/BioJulia/ragel - 0c0e9c1d95fd267a2231a886196ada5e6138acba authored about 18 years ago
github.com/BioJulia/ragel - e019f72d44b9815c730028586bd36f3a2643e670 authored about 18 years ago
to the recurisve calls to make. Now using phony targets instead of shell script
code which iterat...
the top level makefile (not covered by SUBDIRS variable).
github.com/BioJulia/ragel - b10b8684d35525ac7405e49dfb74fcf5701b389b authored about 18 years agogithub.com/BioJulia/ragel - dc7bb43db1eaf68fab1f69501fbf6aa47b91cd7f authored about 18 years ago
github.com/BioJulia/ragel - e7a81afe4320794dff0a6b11affb33df68ee30c3 authored about 18 years ago
and short alphabet types. The transformation to java in the test suite sets the
byte alphabet typ...
removed from rlcodegen.
github.com/BioJulia/ragel - 190afdfe0c297402c8b87127ec24c8563a5587b6 authored about 18 years agogithub.com/BioJulia/ragel - 848097b7f7a4529fff31c872342cc74398bbbf62 authored about 18 years ago
of rlcodegen.
github.com/BioJulia/ragel - 69f8f9eba1efb5fb5ddbbebd3244604443f0186e authored about 18 years agocode generation classes. The rlcodegen.h include was removed from the files
which will go into th...
github.com/BioJulia/ragel - c9b829a8007169c25a4f749f7ee6d5c73550fcbc authored about 18 years ago
github.com/BioJulia/ragel - d92b6c7349404dc6fb1806414a0d8adeca78cd3a authored about 18 years ago
in FsmCodeGen: finishRagelDef and writeStatement. All interpretation of the
write statement will ...
next to host elements. The ragel_def tag is now used exclusively for defining a
machine.
FsmCodeGen.
github.com/BioJulia/ragel - f4d8c81f0f72d0485397033e9a88656b7e256d58 authored about 18 years agoCodeGenData.
github.com/BioJulia/ragel - e01aaca58e109b392a6fabaa76a505d717b43290 authored about 18 years agopointer structure still works fine. They just now point to superclass and
subclass of one another...
CodeGenData constructor.
github.com/BioJulia/ragel - d5a5ee4b5d6f0c5710b7b6f7de87489fdf12c55a authored about 18 years agogithub.com/BioJulia/ragel - d2eb7113a3e547bd41b6cef53ce1e276d46a91e3 authored about 18 years ago
github.com/BioJulia/ragel - c2c9337219708c1fa0d6c1411505dc00920f58e7 authored about 18 years ago
from code generation. The makeCodeGen function is now a callback which will be
executed by the re...
CodeGenData to RedFsm.
github.com/BioJulia/ragel - 93447f722f4e2d239c7b2fc3d2f458b19e669b26 authored about 18 years agogithub.com/BioJulia/ragel - 5d93161748b26c1073141952c9056aa7180e878c authored about 18 years ago
github.com/BioJulia/ragel - 935485f8d093ce9cfde64f6834058210f00a4116 authored about 18 years ago
fsmName variable from FsmCodeGen.
github.com/BioJulia/ragel - 62da7113af5f233c5b9993e32875360b47af7c1b authored about 18 years agogithub.com/BioJulia/ragel - d6e8be1ab8b9b024419ca9ae00e1fe180444653d authored about 18 years ago
the wrong output_filter for open failure.
github.com/BioJulia/ragel - 54f6370cf7e412f291c8c8bb3cb0ac674db1cb16 authored about 18 years agogithub.com/BioJulia/ragel - 318ac90e619af6b115291b8d649b8525cca98c6c authored about 18 years ago
boxes.
github.com/BioJulia/ragel - 458e3579b51d4b348a66c6fbe3141da3a4937ac4 authored about 18 years agogithub.com/BioJulia/ragel - 79f8ed28b440f9d92dd17fb253453a181fa5e8ec authored about 18 years ago
github.com/BioJulia/ragel - 0f118cbe9e6fe4144488e2639fdb48b4e5ffedb5 authored about 18 years ago
still.
github.com/BioJulia/ragel - ace5a170c97c845c009b6869d982fbb6c57b6574 authored about 18 years agogithub.com/BioJulia/ragel - ce7dfc9ab4c484647438d6151b38192afd703532 authored about 18 years ago
non-determinism).
github.com/BioJulia/ragel - 940d73f72db5cede017c39f33fbfdd69021c2865 authored about 18 years agogithub.com/BioJulia/ragel - c1aec7d77a7039ce878b644a77f1bbdf2694c9a2 authored about 18 years ago
README.
github.com/BioJulia/ragel - 6f4a03da908e4e7d801ccdc77f1c9af5bef4d4ed authored about 18 years agogithub.com/BioJulia/ragel - 3f01150ce66120dcecee5238898ee9a2a7c90278 authored about 18 years ago
weight in the figures describing the operations.
github.com/BioJulia/ragel - 9c0a9fee62044a727b80003ba2185b575a71ca3f authored about 18 years agogithub.com/BioJulia/ragel - ca94f1f052f3dad499b73af4bdb948c0257c4bca authored about 18 years ago
These need bounding box fixes at the very least.
github.com/BioJulia/ragel - e2c401371a9db146b5b579093748ca3acbf4b2ba authored about 18 years agogithub.com/BioJulia/ragel - a24c8b53e5b2fea63a68c2256292393fb8a31ecc authored about 18 years ago
semi-colon. The error was not covered by the (meagre) test input.
github.com/BioJulia/ragel - fd5e66eb0654cbb82eff7d17ce88bf6e5d960a43 authored about 18 years agogithub.com/BioJulia/ragel - d5e56b606d62aa159ef7b263740e0b1bfaade861 authored about 18 years ago
ragel language matches 5.16 exactly. Can revert these changes to the test to
make diffing against...
github.com/BioJulia/ragel - c79257ef2ead031c47d1b086716ac143e5827b34 authored about 18 years ago
github.com/BioJulia/ragel - 80151e4083d13d38dd3e2f5805433dc29b070915 authored about 18 years ago
statements embedded in the host code which explicitly specify which portions of
the machine to wr...
github.com/BioJulia/ragel - 5628c10a2a2b4cd3e47a360184fac9a3d3bea21f authored about 18 years ago
github.com/BioJulia/ragel - d97a5d6e8128e810b9cd4fcd6217f6ef2a1c103b authored about 18 years ago
github.com/BioJulia/ragel - 1860b2567f6c5ad2edc203b7c33944e2599b0531 authored about 18 years ago
github.com/BioJulia/ragel - f7eccf2ccaaed78752d9625c0a02c4bdbf40510a authored about 18 years ago