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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
the man page.
github.com/BioJulia/ragel - d4c50bf113f2cb7dbc47a3f3d36221317dcaf64f authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 2911a2019dd1a095ce1f1fe99666008ce5f8fb2a authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 46b3ebf56186b787070cdb3530d1519c5f832e48 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 8f6fd5785a7af4b8441ffcd063614ff17fe3a2a7 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c56e08d1736ef1141660468fbdc902ea44ff7a8c authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 6569f5f3a6b82878bb249c4555ea559f7eb93a87 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - e801ba5d99171cb7dd78c746a0e3b1bc5b01c035 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 844716fba1e8667471ae1303b8409504cfd8d5d4 authored almost 17 years ago by Adrian Thurston <[email protected]>
the two diagrams that need to the updated for 6.0.
github.com/BioJulia/ragel - c6d652a2ed858766551f9c79fb498854383c598e authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 8b41bd82481ed217d5b9c9975cd300f49e251e1a authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 8e4fff0ae44b0293215af5201074c775b37d5bf9 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 82ca96df5c65b5db8a4fb069248a973dc8a183fa authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 44eae7b90e8926049e89290203ff4d4fe5623fd7 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3e5b611e2167be35d6b0485d40fab5a437a79ba5 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 47af31bf2124b528fadfc9ed08c3e2df7d248f9f authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a46133def8877ad9e9857a3ae98bfa411e33667f authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 0608d06e91634eb98ed959c66522de8a57cd9044 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a44375d6c97c57cdc1ce153ad3d4039611cb50f3 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c39d4e956ddd6c562463ee5422f99835f4b8dace authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c02be1288e0aba59937fd34c5159aa8ebdc0e839 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 35ebce8160cd9bda1ea697ebea3d2e5c442f3931 authored almost 17 years ago by Adrian Thurston <[email protected]>
char* and about && within ||.
github.com/BioJulia/ragel - f356f9f3181d5e93c6617d5c66d744631ca81fcc authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 4e8594ac656c9485ee3c1d28737f35ff5fa4fece authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 1b647197f07af5be8cb0a4a04b012b4deadf3795 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 1702e233de19b0408e13a8df4120b242b26d6fe0 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 434742cfff05118b1cd1e54cc8539c29c7ac2e26 authored almost 17 years ago by Adrian Thurston <[email protected]>
Large arrays are now created by copying in the data from smaller arrays using
System.arraycopy()...
that ragel does not compare action text. This tripped up a user.
github.com/BioJulia/ragel - 27970607e0880415da29b89b4cb387c3117c6e0c authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 6fe99bdf61bcee7f52d9d90535b788b838f4b791 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - d589296b1c3d577eb4376379160264dae0f94e38 authored almost 17 years ago by Adrian Thurston <[email protected]>
now require an input file. If standard in is used then we don't have a file
name on which to base...
github.com/BioJulia/ragel - 80bbce810a1421659651afc1211b24b3b5174e15 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - e6302d14994c10735463b410e8be63b26d75226b authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3ab6b2bb5e07a62f5acd8cbf5bfc2a3cf696c015 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3b1e24006d147a6a2a2e14f89fb6b9091d10ece2 authored almost 17 years ago by Adrian Thurston <[email protected]>
the executable location searching and fork+exec code.
github.com/BioJulia/ragel - cee2765b598813066052c368a0f8ce543ad881ee authored almost 17 years ago by Adrian Thurston <[email protected]>calls the frontend (itself with the -f option) and the backend.
github.com/BioJulia/ragel - e61ae8bfbd135f2fb6c7cd7667edc0ada69f5a57 authored almost 17 years ago by Adrian Thurston <[email protected]>the examples makefile.
github.com/BioJulia/ragel - 098a160efe43104f3b2d146d03c195a0b3916daa authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 1c22fd04707dd3c39f49b171ce9776eaffb54059 authored almost 17 years ago by Adrian Thurston <[email protected]>
Added a passthrough in the frontend for the backend options.
github.com/BioJulia/ragel - ec6d12f83e8a1b50ace2e954aae74e1fe616f310 authored almost 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - e5d757e9185dfc8408038376a93b9cf920f6df04 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 7f71f99c9f36c345497c6385b67f289836549500 authored almost 17 years ago by Adrian Thurston <[email protected]>
argv0 then it is assumed that the path is explicit and the path to the backend
executable should ...
github.com/BioJulia/ragel - aea0c84ecbc686fa376cd6b1a02b4f8d847ff064 authored almost 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - f8676dfbdfa3c55e580be3b5b851a291cef93b7e authored almost 17 years ago by Adrian Thurston <[email protected]>
state is not final when compilation is complete.
github.com/BioJulia/ragel - 3cfb34085fe249ade4c6f9b10c907ac4ab2eb0f2 authored almost 17 years ago by Adrian Thurston <[email protected]>into a final state that remains final when compilation is complete. Regenerated
the exaction exam...
is no longer needed for genfigs.sh. The genfigs.sh script now uses ragel and
rlgen-dot from the c...
github.com/BioJulia/ragel - 88aa0824b5a445f24faddd7f33ba6c7dc5e94bbc authored almost 17 years ago by Adrian Thurston <[email protected]>
into the EOF event.
github.com/BioJulia/ragel - 3032242a1dcbae646d9802f7957201b53513ab72 authored about 17 years ago by Adrian Thurston <[email protected]>a leaving action/priority into the start state if it is final. If EOF happens
in a state with a l...
github.com/BioJulia/ragel - 88b2123344c8b6b944b1bf08eb7a16f70f081cba authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 28eb9bbba72cab8c9d77aa6d76106e1ce9f0ca9d authored about 17 years ago by Adrian Thurston <[email protected]>
flat table code generators.
github.com/BioJulia/ragel - dd29d4ba0f4cc7de3786726ad2ad232bc01ed9b6 authored about 17 years ago by Adrian Thurston <[email protected]>RubyFTabCodeGen.
github.com/BioJulia/ragel - b0ea1c71f7de3ba9bbbd102d12a40229771c370a authored about 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 82e8f189f8b06811bf6f52b251beea134bba9faf authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 672ab5add059d57c9181d050290ca244c3240319 authored about 17 years ago by Adrian Thurston <[email protected]>
eof pointer.
github.com/BioJulia/ragel - fa7aae7416f8bd4f8765c2fb7390b75cceb1040a authored about 17 years ago by Adrian Thurston <[email protected]>driver; a switch statement with fallthrough cases are now used to emulate
gotos.
github.com/BioJulia/ragel - 481c68889c2ff3a4ceaf2b54beae710399605bb5 authored about 17 years ago by Adrian Thurston <[email protected]>
states. EOF transitions (present when an EOF targets are present) are now
passed to the backend a...
github.com/BioJulia/ragel - ffbaba66dffbf1e4a850cc30fd80d1aa8b25ae4c authored about 17 years ago by Adrian Thurston <[email protected]>
back to the start state in scanners.
github.com/BioJulia/ragel - 51dc48d873416dadc9ded6ff214413ec93ccdf5e authored about 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 9331691d783a5eb3fb8f6c0adc1741ea31e9d96f authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 48158586099d8acab15b923ccaddaf9743109846 authored about 17 years ago by Adrian Thurston <[email protected]>
checked against eof when the processing loop is broken out of due to p == pe.
If p == eof at this...
github.com/BioJulia/ragel - b8d15ad40d6cf52da0cfded624889c38cfd949a5 authored about 17 years ago by Adrian Thurston <[email protected]>
first example it shouldn't contain a special purpose write option like 'noend'.
github.com/BioJulia/ragel - 7370f58d087d426b7f8404339f2d005526ffa0cc authored about 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 90f05a7573fc8befbfd40282a57a61e160f1fb3e authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3c0416a84ff26e68220449c9ff2c0c687bbcaddc authored about 17 years ago by Adrian Thurston <[email protected]>
written out during call and return statements immediately before pushing the
current state to the...
github.com/BioJulia/ragel - d240c0e58d2820cdba2db6463c7db274a717fcbf authored about 17 years ago by Adrian Thurston <[email protected]>
keyspace an error message is emitted. A paragraph about this was added to the
manual.
write option. This tends to trip people up. Added a basic example which appears
first.
This patch implements -T1 -F0 -F1 and -G0 in the ruby code generator.
Goto-driven code generatio...
github.com/BioJulia/ragel - b18c092f45ac8733c5bb1e7242be6ea85b942a77 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 7a42a1522c5d95b7ffeea0680b3b4b767d5c2580 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3f41e5dd3077b4a75b252f1161268ed623484151 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 29b9d07ac44f22181c8dbd63c11337d08012ab5b authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c83166aae40a6c1fba63f1799c94eec899126ee7 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - efff4f8e50f02ce84a3103c1916d50bea3d5f829 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 2b83c2521c28eb926fbc1ca139c5e4df010aec9c authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - ecf544842764e58e3aa14abc84d681ef5a0cb898 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 71dd2c69c11b67c6a36421afe8054aa54b4ddf91 authored about 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 07b091799eee5d78ab4eee262660c4e3878afdef authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a7a045e4f0da92ee8701af25d814a0abc10b85a2 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 368d60bd22d7ccc43dd33fb6029a668f4bad8334 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - b620ed6842dde4757cd0aec62676e8eaf76eea38 authored over 17 years ago by Adrian Thurston <[email protected]>
instantiations and hence no state machine.
github.com/BioJulia/ragel - d04ed47698af479de10efeda3d0828d02f620933 authored over 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 6faf79632a5ead0891af99a9eaaa154e17b97ec7 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a88c7f3b4628b2467f5a3d769f8daa9ec344636b authored over 17 years ago by Adrian Thurston <[email protected]>
Added the "variables used by ragel" section.
github.com/BioJulia/ragel - a054adc9a58ca20c30bd2cc0a228c0293eddbfe3 authored over 17 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 07162fd2775a3a1c8ceb9640f7ca5b0444eb6e18 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c49d844f33a73245b8290f17c83b90eed2b6d26c authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 6bf0baaaafe3780e29584bf04a8cfdbe0226a4fd authored over 17 years ago by Adrian Thurston <[email protected]>
implementation used in the java code generator is imitated using control flow
variables.
github.com/BioJulia/ragel - 72e9db02806a95611f591f1eaeb032ae56c5c155 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 4cb18b00babafb4b6cd6de3f571e72d45dfb43c1 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - ea7f4cf31786805aee12c470e514a5bc676b9b60 authored over 17 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 2d438951a2c5f5f1ae9b67020fb5f358dc57e640 authored over 17 years ago by Adrian Thurston <[email protected]>