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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Cleanup of the C/D code generator.

github.com/BioJulia/ragel - 8a1c074fa6d0c4a9acd8cb856ed1078e6b476239 authored almost 16 years ago by Adrian Thurston <[email protected]>
Some cleanup of the java code generation files.

github.com/BioJulia/ragel - ccfa1829c8aa06d2a7dc380525400e2809884e51 authored almost 16 years ago by Adrian Thurston <[email protected]>
Removed the now missing makefiles from the list of files to generate in the

configure script. Changed the csharp- prefix to cs-. Remove the
cs-rlgen-csharp.h and cs-main.cpp...

github.com/BioJulia/ragel - 7b1b7cfe92dece4ea365dda5540df16880832e36 authored almost 16 years ago by Adrian Thurston <[email protected]>
Don't need the redfsm directory anymore.

github.com/BioJulia/ragel - e9a4322422985998b1ef66ea8424187d594649f6 authored almost 16 years ago by Adrian Thurston <[email protected]>
Moved all the code into the ragel directory.

github.com/BioJulia/ragel - aa2775b6e966bdce5b34faabaeb644a14ef311ff authored almost 16 years ago by Adrian Thurston <[email protected]>
Erich Ocean did more than just Objective-C code generation -- he contributed a

lot of feedback.

github.com/BioJulia/ragel - b949d7cffc287e51c358ec92cfa294efcb82ed35 authored almost 16 years ago by Adrian Thurston <[email protected]>
More refactoring in the layer between backend and frontend.

github.com/BioJulia/ragel - 92e94edb114d84ff892773812a7e3a1e4dd6ab31 authored almost 16 years ago by Adrian Thurston <[email protected]>
Minor refactoring. Added inputdata.h, which was left behind during previous

commits.

github.com/BioJulia/ragel - 306f7e41df38fbae8426c57f8ab949ea7910bb69 authored almost 16 years ago by Adrian Thurston <[email protected]>
Some more movement of code and data within the layer between frontend and

backend. Needs more cleanup.

github.com/BioJulia/ragel - 9ed73ddf4f2cd83064ede41f626eb98be5abd106 authored almost 16 years ago by Adrian Thurston <[email protected]>
Some more refactoring following the elimination of the intermediate file. Don't

need XmlParser. Now using a new struct InputData instead.

github.com/BioJulia/ragel - 77ac6868f484078b2ba3b2782c61aa3143f45f12 authored almost 16 years ago by Adrian Thurston <[email protected]>
some refactoring

github.com/BioJulia/ragel - 630c0d0a3e39e2910e4f29bd9b9644ef62c31422 authored almost 16 years ago by Adrian Thurston <[email protected]>
More work on the direct connection between frontend and backend. Now appears to

work. Test suite is passing.

github.com/BioJulia/ragel - 4885cf477c37bf761a93b90919daed36b9ee8de9 authored almost 16 years ago by Adrian Thurston <[email protected]>
The rest of the direct-to-backend code. Not tested yet.

github.com/BioJulia/ragel - d95b179638c1ff9509605feb717dfa1d3db39682 authored almost 16 years ago by Adrian Thurston <[email protected]>
Implemented makeLmSwitch and started making calls to makeGenInlineList.

github.com/BioJulia/ragel - 8b24903e0f3c85b145664d141ae37c2bb20f2e09 authored almost 16 years ago by Adrian Thurston <[email protected]>
Script for generating unicode machines. From Rakan El-Khalil.

github.com/BioJulia/ragel - 121a8996444952fcb762df1e547d2625d1307768 authored about 16 years ago by Adrian Thurston <[email protected]>
more work on the building of backend inline lists

github.com/BioJulia/ragel - 49269fcc3ae23a3c44b004be7e03ebad596993d8 authored about 16 years ago by Adrian Thurston <[email protected]>
Get ragel working again while the direct-to-backend code is being written.

github.com/BioJulia/ragel - d63f87bf18b06ea96137c6ef6ceae1a9c5dbb0a8 authored about 16 years ago by Adrian Thurston <[email protected]>
removed unused function

github.com/BioJulia/ragel - 90456bf07061e90dc3d50e10084932063ef30713 authored about 16 years ago by Adrian Thurston <[email protected]>
Implemented more of the direct access to the backend.

github.com/BioJulia/ragel - 95a334f70c6a8b2671fae12860509ec63b72f8dc authored about 16 years ago by Adrian Thurston <[email protected]>
Started working on the direct construction of the backend inline item lists.

github.com/BioJulia/ragel - eb8719affb021de9ebfca8da75316da32df7a05c authored about 16 years ago by Adrian Thurston <[email protected]>
Need preserve xml code generation and duplicate+migrate to direct backend data

generation. This commit brings back some of the xml code generation code that
was migrated to dir...

github.com/BioJulia/ragel - a85e4f3db69b97eb8ffa4b23d366229d9fbb1dc4 authored about 16 years ago by Adrian Thurston <[email protected]>
More work on the direct access to the backend. The xml code gen should be

preserved, not converted. Going to have to bring back some changed code.

github.com/BioJulia/ragel - 7e9092ae7b6f9bb1694f40846b193b44967a40ce authored about 16 years ago by Adrian Thurston <[email protected]>
The action of the <ragel_def> tag was made into a direct function call.

github.com/BioJulia/ragel - 869d2a2e4c0d044272fedcf6670078a7f982193a authored about 16 years ago by Adrian Thurston <[email protected]>
Don't need to pass the language as a string, just use hostLang.

github.com/BioJulia/ragel - 85e42aa43624892bcb6621dbe15febe8078f89ce authored about 16 years ago by Adrian Thurston <[email protected]>
Starting to elminated the XML intermediate file. Removed the outter <ragel>

tag. This required including xmlparse into the frontend files. One name clash
of ActionTableMap h...

github.com/BioJulia/ragel - 48f7d39bbc275beb00c9ed5decc68777f66ea245 authored about 16 years ago by Adrian Thurston <[email protected]>
"eof" is no longer a write command.

github.com/BioJulia/ragel - e246f989278c7082c0eeb0b3db22d13f346d9394 authored about 16 years ago by Adrian Thurston <[email protected]>
email address update: [email protected] -> [email protected]

github.com/BioJulia/ragel - 72c7f62e19a170d7c0e0fe187fadb97f09f7db8c authored about 16 years ago by Adrian Thurston <[email protected]>
In kelbt 0.13 the eof token is prefixed with the parser name. Also updated the

copyright year for -v, --version.

github.com/BioJulia/ragel - fdfc2b558303d12133d03c148ab511758af78b1f authored about 16 years ago by Adrian Thurston <[email protected]>
Added support for DESTDIR variable. Patch from Diego 'Flameeyes' Pettenò.

github.com/BioJulia/ragel - 5f093f4028cc9e92829937a7b42936c216a356c4 authored about 16 years ago by Adrian Thurston <[email protected]>
Use CXXFLAGS instead of CFLAGS for C++ compiling. Patch from Diego 'Flameeyes'

Pettenò.

github.com/BioJulia/ragel - ca335fbc65cc0d2f9ffba35f0eba411b9a42e1fc authored about 16 years ago by Adrian Thurston <[email protected]>
removed redundant error check

github.com/BioJulia/ragel - f122ae8ba910dd1cb1724e75f150ba04f7867100 authored about 16 years ago by Adrian Thurston <[email protected]>
A fix to the documentation makefile from John D. Mitchell.

github.com/BioJulia/ragel - 5c063c774668a3196fa82759ae27812ab5d44eef authored about 16 years ago by Adrian Thurston <[email protected]>
Now supplying the XmlParser to writeMachines.

github.com/BioJulia/ragel - ac28e304892ac744584b25d8ac570ce71727eb22 authored about 16 years ago by Adrian Thurston <[email protected]>
The XML parser and scanner are now created in ragel/main.cpp. These structures

can now be made accessible during the writing of the XML file, allowing
incremental bypassing of ...

github.com/BioJulia/ragel - ef4e6b332b58d8eec955767b32aa323a2c0c9aae authored about 16 years ago by Adrian Thurston <[email protected]>
Renaming to avoid name conflicts following the merge of the frontend and backend.

github.com/BioJulia/ragel - f783b5c95b1d1a2383a8eeb1f7a0077070990f88 authored about 16 years ago by Adrian Thurston <[email protected]>
Backend main functions are now factored out.

github.com/BioJulia/ragel - 80a0fccebb77fd2a8ab95a7678c0e398d87a834f authored about 16 years ago by Adrian Thurston <[email protected]>
Removed arg passing from frontend to backend functions.

github.com/BioJulia/ragel - 9972753e18f80fa6e0a08bb7d64eb38d1cfe10a1 authored about 16 years ago by Adrian Thurston <[email protected]>
Dot output working again.

github.com/BioJulia/ragel - fb421dfd5723f2f30f0ed13999aafd9835e2505b authored about 16 years ago by Adrian Thurston <[email protected]>
Started on the move back to a single executable. The backend programs are now a

part of the ragel program, with the the frontend and and backend components now
function calls. T...

github.com/BioJulia/ragel - 542e17321c5924e4300bf579366414cf26d5b773 authored about 16 years ago by Adrian Thurston <[email protected]>
Notes on version 6.3.

github.com/BioJulia/ragel - b85fd1bc3436b8d59d5a208e5ddffa3ee787b4f1 authored about 16 years ago by Adrian Thurston <[email protected]>
Include the root in the include history.

github.com/BioJulia/ragel - 1215d91ffca7ee8b49f02c06c4dafdd9c82bc846 authored over 16 years ago by Adrian Thurston <[email protected]>
Track the entire include history of a parser state to prevent duplicates.

github.com/BioJulia/ragel - eae38663758f33fb3b75a7401610d6fb6b89f88b authored over 16 years ago by Adrian Thurston <[email protected]>
Added Mitchell Foral.

github.com/BioJulia/ragel - 68e6d04bcac61addb8f00644ef3a44cfee18cbfb authored over 16 years ago by Adrian Thurston <[email protected]>
In the condition code we need to copy transitions that have non-empty

lmActionTable arrays so we can't assert emptyness in the constructor. Lift out
the assertion and ...

github.com/BioJulia/ragel - b28a1c5a8da2a58427bc77ab3de58386800bf3ce authored over 16 years ago by Adrian Thurston <[email protected]>
added item.

github.com/BioJulia/ragel - 38a2583bbdf363eb60f6d39f965476542cbc85a0 authored over 16 years ago by Adrian Thurston <[email protected]>
Fixed crash on failed lookup of goto/call/etc target.

github.com/BioJulia/ragel - cb79d02450205220d12e0d8389be6ecbfe22bc66 authored over 16 years ago by Adrian Thurston <[email protected]>
Make all links black except for citations (of which there are none).

github.com/BioJulia/ragel - 58f0f076be9dfd61c6236604e78a32cb0d47bf4d authored over 16 years ago by Adrian Thurston <[email protected]>
another grammar fix

github.com/BioJulia/ragel - 66e22080a27d77a36a19ed22a08f3819321e16ad authored over 16 years ago by Adrian Thurston <[email protected]>
Minor clarity fixes.

github.com/BioJulia/ragel - b318fa1eb8778c6d82f2b69d059400d16e2ea518 authored over 16 years ago by Adrian Thurston <[email protected]>
notes on 6.2

github.com/BioJulia/ragel - 261a99518d5f8266f1a2063cd9081aaede5cdaf9 authored over 16 years ago by Adrian Thurston <[email protected]>
New patch from Evan with setup factored out.

github.com/BioJulia/ragel - ebdd7fce7e3ed94a7c9ef4ccd1af20c408e40b53 authored over 16 years ago by Adrian Thurston <[email protected]>
Patch from Evan Phoenix: updated rubinius code generation to the latest

rubinius.

github.com/BioJulia/ragel - 2a1d42abc05cb42efe647d8a7e33d320712c7ae3 authored over 16 years ago by Adrian Thurston <[email protected]>
added an item.

github.com/BioJulia/ragel - e4fa3242dc4f41763953d4a620f22b42456f38b3 authored over 16 years ago by Adrian Thurston <[email protected]>
lm_switch needs to set p from tokend when there is no user action.

github.com/BioJulia/ragel - 1e4cadec8af7570c7a9d166dd908d6271c519e92 authored over 16 years ago by Adrian Thurston <[email protected]>
Added hyperref doc. From shabble on IRC.

github.com/BioJulia/ragel - af1676e83d07cffd07548675739a20c4408514ec authored over 16 years ago by Adrian Thurston <[email protected]>
Removed completed items.

github.com/BioJulia/ragel - e546353055d6b805936241b046aae7a57a5f44c4 authored over 16 years ago by Adrian Thurston <[email protected]>
removed unused case

github.com/BioJulia/ragel - 713b2768a6d8bb43a79b072abdb82bdb69e766cc authored over 16 years ago by Adrian Thurston <[email protected]>
Adjust maxIndexOffset to include eofTrans. Use maxIndexOffset when picking the

type for eofTrans.

github.com/BioJulia/ragel - 99104be4f67cb4a7c6d9c8ce16d820404719a0e2 authored over 16 years ago by Adrian Thurston <[email protected]>
Bug fix for eofTrans. When not using indicies we can't use a transitions's id

to identify the transition to take. Instead add the transition to the end of
the list and store i...

github.com/BioJulia/ragel - f7f431d65e602c1d97772f722a590c37ed4a0b94 authored over 16 years ago by Adrian Thurston <[email protected]>
Missing break.

github.com/BioJulia/ragel - 2e3e4c7bbd522ede5b0f891e5345e709f9f3c015 authored over 16 years ago by Adrian Thurston <[email protected]>
Applied patch for compiling Ragel using MSVC from Andrei Polushin.

Changed WIN32 -> _WIN32.

github.com/BioJulia/ragel - 452cac4ecebd4265e17334dae7530fb3a9738baf authored over 16 years ago by Adrian Thurston <[email protected]>
Applied a patch from Andrei Polushin for setting the error message format.

--error-format=gnu (default)
--error-fromat=msvc
Switched from strcasecmp to strcmp for testi...

github.com/BioJulia/ragel - ce79e46988e190aab724dfe69469ad7059f13ac5 authored over 16 years ago by Adrian Thurston <[email protected]>
Test fnext in combination with fbreak.

github.com/BioJulia/ragel - 054f1e5125a963b354f3a7b14f8a2a76514d9b38 authored over 16 years ago by Adrian Thurston <[email protected]>
Added Andrei Polushin.

github.com/BioJulia/ragel - 5bf3b47be606031168ad36a035409659afe5f937 authored over 16 years ago by Adrian Thurston <[email protected]>
Typo fix from Andrei Polushin.

github.com/BioJulia/ragel - 5d05dac08049e6f672db4edc96d15def46f1749c authored over 16 years ago by Adrian Thurston <[email protected]>
LM_ACTION and SUB_ACTION need to propagate csForced. Really should overhaul the

action traversal and store these properties in some traversal descriptor.

github.com/BioJulia/ragel - 9eff8cb6a0fe2fd89f810f25294844d48ed8a10f authored over 16 years ago by Adrian Thurston <[email protected]>
An fnext followed by an fbreak in -G2 did not work. The fbreak was not aware

that the fnext causes the cs variable to be forced active. In this case fbreak
does not need to s...

github.com/BioJulia/ragel - 5f7ff0af1fc7651cae55ea6e56ed6b8d7b76c808 authored over 16 years ago by Adrian Thurston <[email protected]>
added an item.

github.com/BioJulia/ragel - ded5247a6e0f907c1a58994b7f46410d4b50727e authored over 16 years ago by Adrian Thurston <[email protected]>
Error messages in start label analysis of join operations were causing

assertion failures because location info was not set. Fixed by adding
locations.

github.com/BioJulia/ragel - f0d76ecd49a51372f8d450f6abae4045ac58722f authored over 16 years ago by Adrian Thurston <[email protected]>
Propagate ALLOW_GENFLAGS and ALLOW_MINFLAGS from language independent tests to

the generated language specific .rl files. In cond1.rl we need to turn off -F0
and -F1 because cs...

github.com/BioJulia/ragel - 7df70723937c5949b765b51de7288798a2ad41d3 authored over 16 years ago by Adrian Thurston <[email protected]>
Improved include and import file searching errors. Added documentation for

include file searching and the -I option.

github.com/BioJulia/ragel - 1e2308163903f60c6577ac47f55e726b6638a3b8 authored over 16 years ago by Adrian Thurston <[email protected]>
Include and import file searching now searches for the file name given based on

the location of the current file, not the program's current path. Additional
search locations can...

github.com/BioJulia/ragel - b337c8e6ed973afd70f99b41c010a8f8e976c053 authored over 16 years ago by Adrian Thurston <[email protected]>
Added Tim Chklovski.

github.com/BioJulia/ragel - b8e13e74e239cbcba45e545ee64f70930ad844cf authored over 16 years ago by Adrian Thurston <[email protected]>
Need to compute the low and high character-space keys from the condition-trans

overlap when computing an expansion. Can't use the range supplied from the
condition overlap sinc...

github.com/BioJulia/ragel - 2c59f7380df62916156b12ad9c2f438abc27701c authored over 16 years ago by Adrian Thurston <[email protected]>
Added limits for the constant sizes.

github.com/BioJulia/ragel - 5c7d7880a5086b23d6c8aa1999567d18b036dafb authored over 16 years ago by Adrian Thurston <[email protected]>
C# patch Daniel Tang.

github.com/BioJulia/ragel - 3809a106e42621bc9962d9809aab62fc6b26a99a authored over 16 years ago by Adrian Thurston <[email protected]>
Docs for 6.1.

github.com/BioJulia/ragel - 4b9ecee1a8a9716665ba1fe0e2c7cd4c1c6ccc45 authored over 16 years ago by Adrian Thurston <[email protected]>
Need to unset the final state status of the start state in kleene star.

Possible to crash ragel by ignoring the warning.

github.com/BioJulia/ragel - daf09e4cae3b52b9377efbda73db412aeccdd21e authored over 16 years ago by Adrian Thurston <[email protected]>
Added a flag -d for turning off the removal of duplicate actions from actions

lists.

github.com/BioJulia/ragel - 485afc983a249ee658cf249127bc925f05265973 authored over 16 years ago by Adrian Thurston <[email protected]>
Scanners now ensure that a pattern's leaving actions are executed.

github.com/BioJulia/ragel - b5e56173261cf58e4345e6f77b0c5f8595f1ec96 authored over 16 years ago by Adrian Thurston <[email protected]>
Print any actions that are in State::eofTrans. These come from scanners only.

github.com/BioJulia/ragel - c48912b52d8526ca76e7da85cae90fa4584381cf authored over 16 years ago by Adrian Thurston <[email protected]>
Use @docdir@ for the docdir makefile variable.

github.com/BioJulia/ragel - f0f2918871e414f4f6ce06c68cfd2fb4bbd46911 authored over 16 years ago by Adrian Thurston <[email protected]>
Check for ar and ranlib in the configure script.

github.com/BioJulia/ragel - 19a05eab56ea2fec98aa1ac5e7d51d1398ddf6da authored over 16 years ago by Adrian Thurston <[email protected]>
MenTaLguY needs to be in here.

github.com/BioJulia/ragel - 6cf70219ddc629db7350fcf6be8a0f0c012202c5 authored over 16 years ago by Adrian Thurston <[email protected]>
Removed a comment that became invalid.

github.com/BioJulia/ragel - cc912ed313a8ae38981b6ece0eac2b635ea8cf0f authored almost 17 years ago by Adrian Thurston <[email protected]>
Added -V to the manual. Removed redundant description of visualization.

Replaced it with a reference to the visualization section.

github.com/BioJulia/ragel - ac99751da8db6e7ae5dd7c31809ba7c5d56a0609 authored almost 17 years ago by Adrian Thurston <[email protected]>
Updates to ChangeLog and release notes and the 6.0 version number.

github.com/BioJulia/ragel - 2784eb8a0900c09be2858b6a34ea9234468abb46 authored almost 17 years ago by Adrian Thurston <[email protected]>
Removed debug message. Fixed const-correctness.

github.com/BioJulia/ragel - 019f5a326d0ebf5c7f4e3b320fa33b0bf9eddd5f authored almost 17 years ago by Adrian Thurston <[email protected]>
Editing pass.

github.com/BioJulia/ragel - 96339547539cc22444eb9447109219c806ba2d77 authored almost 17 years ago by Adrian Thurston <[email protected]>
Rewrote the material taken from the changelog.

github.com/BioJulia/ragel - 9204e36dac2dda8d740e3d8e6c63112d25d4fc59 authored almost 17 years ago by Adrian Thurston <[email protected]>
Started on release notes for version 6.

github.com/BioJulia/ragel - c21469644ddfd30e8d2eb74a57864fc16b817b1c authored almost 17 years ago by Adrian Thurston <[email protected]>
Self-host with 6.0.

github.com/BioJulia/ragel - 06981f8c63849e2f14cb134e23334f9681f061e0 authored almost 17 years ago by Adrian Thurston <[email protected]>
tokstart => ts and tokend => te

github.com/BioJulia/ragel - 7f933c7783771ebd21ea254f4217491f55f112d3 authored almost 17 years ago by Adrian Thurston <[email protected]>
The "tokstart" and "tokend" variables were changed to "ts" and "te".

github.com/BioJulia/ragel - b0ca6d1779f92b4779d59e494f810aa0b1aecfce authored almost 17 years ago by Adrian Thurston <[email protected]>
More documentation of 6.0.

github.com/BioJulia/ragel - 9102a6697308b6f03f4665f8fa2564068b7bdc47 authored almost 17 years ago by Adrian Thurston <[email protected]>
The fbreak statement now advances p.

github.com/BioJulia/ragel - db5a5d0160ac35b681fcdcebc3f7cc25bd953af1 authored almost 17 years ago by Adrian Thurston <[email protected]>
Prevent the left machine from persisting through :>> via an empty string on the

right.

github.com/BioJulia/ragel - 9052f1b801e17a8ba666eb0abd4c6eb9f61626d4 authored almost 17 years ago by Adrian Thurston <[email protected]>
Don't allow the left machine of <: to escape through the right machine via the

empty string.

github.com/BioJulia/ragel - f394ef8e1f8ef850b281732e934276b0941acf57 authored almost 17 years ago by Adrian Thurston <[email protected]>
If -M or -S are given and we're not generating a dot file then invoke the

frontend. These options are not useful with code generators.

github.com/BioJulia/ragel - 8ad9179ffb15eea4173eb14c611e8d2ad4417961 authored almost 17 years ago by Adrian Thurston <[email protected]>
Added missing operators.

github.com/BioJulia/ragel - 70120c365a6e50bad8f168b50745a41923e4ad06 authored almost 17 years ago by Adrian Thurston <[email protected]>