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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Factored out transition-related code block clones in the condition expansion.

Gave the CondTransAp a pointer to the TransAp. refs #306.

github.com/BioJulia/ragel - 722ebbf0a28b515915bd6280fb4b746d6b48e4f7 authored over 13 years ago by Adrian Thurston <[email protected]>
Starting on the condition implementation rewrite. Added an out list inside each

TransAp and an inList in each state. Now maintaining a single transition in
this list for each Tr...

github.com/BioJulia/ragel - 9e8a911bb732ca96e798236738ee097abb8efe57 authored over 13 years ago by Adrian Thurston <[email protected]>
Version bump and changelog for 6.7.

github.com/BioJulia/ragel - 129479ccf2fb3b6ef329e6ed8ea949cda2d69de0 authored over 13 years ago by Adrian Thurston <[email protected]>
Added isOrd and isChar to the HostType. Only specified properly for CSharp, can

be adjusted where necessary for the other languages. Fixed literal format for
non-char types in c...

github.com/BioJulia/ragel - 434b0c729ea38da945ebdb0b2cd5db8db3ad8dde authored over 13 years ago by Adrian Thurston <[email protected]>
Allow renaming data variable in C# code. Patch from Denis Naumov. refs #250.

github.com/BioJulia/ragel - 5e62055eebedb7652bb1a6a867ed05f1cff4fd8e authored over 13 years ago by Adrian Thurston <[email protected]>
Can no longer use a string as an array of ordinals in Ruby 1.9. Must call the

ord function on the characters. Patch from Diego. refs #100.

github.com/BioJulia/ragel - 9fb7744f2038d4c0f2773b4695edadbc61a716d9 authored over 13 years ago by Adrian Thurston <[email protected]>
Added explicit cast to type of _trans when modified using pointer diff.

Silences compiler warnings. refs #10.

github.com/BioJulia/ragel - 68747ba653cc324f62921109446920bb49f7ecde authored over 13 years ago by Adrian Thurston <[email protected]>
Compilation fixes. Not all working yet though. refs #259.

github.com/BioJulia/ragel - 5a8a4249e69264afccd530d5ea0f815329489c99 authored over 13 years ago by Adrian Thurston <[email protected]>
Makefile for the ocaml examples, though only the url example builds with this.

refs #259

github.com/BioJulia/ragel - e9a2228a8f603936f857390c13ec2d9f932af75d authored over 13 years ago by Adrian Thurston <[email protected]>
D2 Patch. From Johannes Pfau.

refs #101.

github.com/BioJulia/ragel - 75996069f81b9dbeacb3932f534319cf3cd5e666 authored over 13 years ago by Adrian Thurston <[email protected]>
OCaml patch from ygrek. refs #259. Missing a makefile for the examples.

github.com/BioJulia/ragel - 1417e6a295fcb23078a18c512ce7a4a3e48235e3 authored over 13 years ago by Adrian Thurston <[email protected]>
Need to clear the ifstream state after an open fails. Works fine with g++, but

not Microsoft's compiler. Reported by Austin Hastings. Fixed by Josef
Goettgens. refs #244.

github.com/BioJulia/ragel - dc1cfe188bfe2581c62090234eea44dd509cda5f authored over 13 years ago by Adrian Thurston <[email protected]>
Patch from David Yip. Activates -L for Ruby. refs #155.

github.com/BioJulia/ragel - 78da1cd239084fdcd57d4b064fb4912d606eb9c4 authored over 13 years ago by Adrian Thurston <[email protected]>
Patch from Ismael Luceno adds builtin machines as constants.

github.com/BioJulia/ragel - 4d9be97c89a1cd2ffc9f3001e7bc99a84a176157 authored almost 14 years ago by Adrian Thurston <[email protected]>
Reverted the latest condition work 1579, 1578, 1577. It is now in the

bit-per-cond branch.

github.com/BioJulia/ragel - 1ea4a9ea71e595342078ef20eedecae59f84b503 authored about 14 years ago by Adrian Thurston <[email protected]>
A little bit more on the conditions revamp. Going to move this to a branch and

try something else ... a trans list in each transiion.

github.com/BioJulia/ragel - cdea8fd2332538dbb92bce0012d7b287e56ad228 authored about 14 years ago by Adrian Thurston <[email protected]>
Working on a simpler approach to conditions. Using a bit for each condition.

Will get around the signed keyspace problem by translating up by half the max
value (making it ze...

github.com/BioJulia/ragel - 4a4c2f6d9d0729ba2d65eb55344073c59a272df3 authored about 14 years ago by Adrian Thurston <[email protected]>
Started on the process of simplyfing conditions by mapping them to bits.

Allocating bits to each condition. Next need to figure out how to expand
without using a range fo...

github.com/BioJulia/ragel - 01d2b401225a5281157a1041da0a7c73c75ffd3d authored about 14 years ago by Adrian Thurston <[email protected]>
Merged in the GO patch.

github.com/BioJulia/ragel - 389013e96cc1ee73fb9c5a4be1b71a131ac6cb14 authored about 14 years ago by Adrian Thurston <[email protected]>
Documented recent changes.

github.com/BioJulia/ragel - d625237f36b570420d102dd09c4a2fd1d5e25cb4 authored about 14 years ago by Adrian Thurston <[email protected]>
The _acts and _nacts variables are scalars that are used as idicies into

arrays. They shouldn't have a type determined by the size of the values in the
arrays, they shoul...

github.com/BioJulia/ragel - 209e21a26af2c41b8cf071c97e9c6eaee8839f3b authored about 14 years ago by Adrian Thurston <[email protected]>
If getting the wide key and doing a comparison against a literal we need to be

careful to get the signedness right. Can't use the alphtype, have to check the
type of wide key.

github.com/BioJulia/ragel - 5cfb7382a1958a15b8d1bfa3cd39e4f9c794e6f7 authored about 14 years ago by Adrian Thurston <[email protected]>
Added an --enable option for turning off the manual build.

github.com/BioJulia/ragel - c0507876851ef4e9591a7824fc6ee70e3176f239 authored over 14 years ago by Adrian Thurston <[email protected]>
support long literals in syntax highlighting

github.com/BioJulia/ragel - 01888a36db3b9d2176d4ac8570beed704b071f92 authored over 14 years ago by Adrian Thurston <[email protected]>
New version from Diego with support for a version check.

github.com/BioJulia/ragel - 230782a3e5e33c5cebca293a4b8d83aa26fb9e88 authored almost 15 years ago by Adrian Thurston <[email protected]>
Removed item that should have been edited out.

github.com/BioJulia/ragel - 050623892b91edc18896a36d86df41ac08d26311 authored almost 15 years ago by Adrian Thurston <[email protected]>
Docs for 6.6.

Turned off the length_cond keyword for the release. The feature is just a skeleton

github.com/BioJulia/ragel - 87f7e0c10d6aad769ebd7f97d46c5c4bde88349b authored almost 15 years ago by Adrian Thurston <[email protected]>
Patches from Diego Elio 'Flameeyes' Pettenò.

github.com/BioJulia/ragel - db531b8293e2a50d634f9fa2738ce2213088eca0 authored almost 15 years ago by Adrian Thurston <[email protected]>
Fixed improper allocation of checks in makeIncludePathChecks.

github.com/BioJulia/ragel - 4e47f0c33f45bb0979ca830afcb414352f7d1029 authored about 15 years ago by Adrian Thurston <[email protected]>
Don't segfault when there are no machine instantiations.

github.com/BioJulia/ragel - 498b3fe7d01101f4038ca904c03f98ac0ff50fbe authored about 15 years ago by Adrian Thurston <[email protected]>
Line directives need to use the fileName stored in the InputLoc stuctures from

the parse trees, not the root source file, otherwise actions in included files
will have the wron...

github.com/BioJulia/ragel - 3e94a0343a4c7662577f2687194b0af68954eb86 authored about 15 years ago by Adrian Thurston <[email protected]>
Added .deps to ignore.

github.com/BioJulia/ragel - a6572cc26aa1c98744e1ad82037ab97552d6c5cd authored over 15 years ago by Adrian Thurston <[email protected]>
Updated to reflect current situation.

github.com/BioJulia/ragel - 68aa5c8d4cbb43d2a00596c9cc4a93748f2b1fd2 authored over 15 years ago by Adrian Thurston <[email protected]>
A number of build system improvements: source the DIST file, which contains

settings for build_parsers and build_manual. This allows the user of a dist to
enable only one.

...

github.com/BioJulia/ragel - 01dd00330b6ee8f93b706880beab6d94b2ddb778 authored over 15 years ago by Adrian Thurston <[email protected]>
Use automake --foreign so we don't need to have INSTALL and NEWS present.

github.com/BioJulia/ragel - 6e7f623aa01d8878c3f930da0c4272ac679d7b60 authored over 15 years ago by Adrian Thurston <[email protected]>
Use region for macros.

github.com/BioJulia/ragel - a2789e3ce2d438a32564da96d6a38bdec6f74c6e authored over 15 years ago by Adrian Thurston <[email protected]>
Just discovered that $srcdir is available in the configure script for checking

for the existence of a file created by dist-hook. This lets us write a test
that knows the differ...

github.com/BioJulia/ragel - 96b269caf5ea551ef1a27b6c45a20ddc0c3c1c49 authored over 15 years ago by Adrian Thurston <[email protected]>
$(SUBDIRS) needs to go inside DIST_SUBDIRS.

github.com/BioJulia/ragel - b6a08683640e47b38a8cb9d3177f2bdd64113cf8 authored over 15 years ago by Adrian Thurston <[email protected]>
Ragel VIM syntax files should be specialized by host language.

github.com/BioJulia/ragel - bdf31c89af2638cd59c5d67d2ad7974e0fa054df authored over 15 years ago by Adrian Thurston <[email protected]>
Started on the frontend support for pointer-based length conditions.

github.com/BioJulia/ragel - 75fd85e625ad7da39a9e0dd2579feca9a6907b86 authored over 15 years ago by Adrian Thurston <[email protected]>
Use top_srcdir for includes so out-of-tree builds can work.

github.com/BioJulia/ragel - 792b55d79a4360f06de127377aa91da494eb90b2 authored over 15 years ago by Adrian Thurston <[email protected]>
Added examples to the build system.

Put examples, contrib, doc and test in DIST_SUBDIRS.
Added unicode2ragel.rb to EXTRA_DIST in cont...

github.com/BioJulia/ragel - 0d28bd1de82c812307c62efa2fccf57284324226 authored over 15 years ago by Adrian Thurston <[email protected]>
Moved unicode2ragel.rb to the contrib directory.

github.com/BioJulia/ragel - 9bdd1ffa820230c109c468f3f067e22044118b48 authored over 15 years ago by Adrian Thurston <[email protected]>
Put -g into the CXXFLAGS in configure.in. This can be overidden with:

# make CXXFLAGS='-O2'

Put -Wall in ragel_CXXFLAGS in ragel/Makefile.am so that it is always used.

github.com/BioJulia/ragel - 0f65d8d7a70b5889d114c5ef81a1273047ac3db8 authored over 15 years ago by Adrian Thurston <[email protected]>
Should not be modifying the program's arguments. Problem raised by const

correctness in gcc 4.4 and reported by Diego.

github.com/BioJulia/ragel - e291f6dac8967cd91ab963282fca193a588b64e1 authored over 15 years ago by Adrian Thurston <[email protected]>
A const-correctness fix from Diego.

github.com/BioJulia/ragel - 04cd21cef84d0ad57f3a5baed3dd9099f802c13e authored over 15 years ago by Adrian Thurston <[email protected]>
A couple header fixes from Diego.

github.com/BioJulia/ragel - d1511ec3c383572547b181662499f0ac1c17d5d9 authored over 15 years ago by Adrian Thurston <[email protected]>
A couple minor fixes.

github.com/BioJulia/ragel - e03165e84d94b7084da67a339fbb2bba66270652 authored over 15 years ago by Adrian Thurston <[email protected]>
About to release 6.5.

github.com/BioJulia/ragel - 125ebec3d10155129b54ed88ae938ab46ec1c6d0 authored over 15 years ago by Adrian Thurston <[email protected]>
Removed the dist-hook in Makefile.am. Touching the files doesn't seem to work

after all. Not sure why. Just going to modify build_parsers and build_manual
using the release sc...

github.com/BioJulia/ragel - dec6f4ad0f90294ee60b0aaa8606099f0aad6cf4 authored over 15 years ago by Adrian Thurston <[email protected]>
Somehow r663, which contained a fix for 64bit, got checked in as a null change

(whitespace only). This fixes that.

github.com/BioJulia/ragel - c903b0a4ded5c0b1c19b8d67fca25e0771c104f2 authored over 15 years ago by Adrian Thurston <[email protected]>
Brought back the dist hook with an improvement. To get around the reconfiguring

of a freshly configured dist that is caused by changing the modified time of
configure and config...

github.com/BioJulia/ragel - 0340e15fa7ee3eaa7c7347e61a24174c627e5a84 authored over 15 years ago by Adrian Thurston <[email protected]>
A couple changes from Josef Goettgens.

github.com/BioJulia/ragel - 8c623bb9cc5102dfc0f0ebe62898bc075dbd4dfd authored over 15 years ago by Adrian Thurston <[email protected]>
Removed the dist-hook. Just going to use ragel-release for changing

build_parsers. Added the ragel and kelbt sources to EXTRA_DIST. Fixed the
wrapper around the chec...

github.com/BioJulia/ragel - dafd42af89e1e065ffdc8a55191ee0e946e14738 authored over 15 years ago by Adrian Thurston <[email protected]>
Added contrib to the automake system.

github.com/BioJulia/ragel - 64a32eb49a1d09ec67c5cce88b2b03507c9aadad authored over 15 years ago by Adrian Thurston <[email protected]>
Automake support for Ragel from Flameeyes.

github.com/BioJulia/ragel - fad52f7169967a2f6bd98d687a856ec654fadf7d authored over 15 years ago by Adrian Thurston <[email protected]>
Put the CLEANFILES for the parsers inside the BUILD_PARSERS check. Added

Makefile.in to svn:ignore in doc/.

github.com/BioJulia/ragel - 1e001c9b01d9875ece036db914dbd92a984a19ee authored over 15 years ago by Adrian Thurston <[email protected]>
Added doc to automake control. Using another conditional to control the

building of the manual. We don't want it built in the dist because the build
dependencies cannot ...

github.com/BioJulia/ragel - e8671db0e7547451909309139838d3e550f12057 authored over 15 years ago by Adrian Thurston <[email protected]>
Updated the svn:ignore in test, added EXTRA_DIST so that tests get added to the

distribution, and added CLEANFILES.

github.com/BioJulia/ragel - a77ddaf9868feabe3eef620b742be80adadceda6 authored over 15 years ago by Adrian Thurston <[email protected]>
Moved the authoritative VERSION and PUBDATE to configure.in. Now generating

runtests from runtests.in so we can get the compiler substitutions in runtests.
Also using automa...

github.com/BioJulia/ragel - 3e533d48eeee917d7617fbe5a82925fca1800bf1 authored over 15 years ago by Adrian Thurston <[email protected]>
Merged in the ragel-6.4-am branch.

github.com/BioJulia/ragel - 110d9909908be132fbadebde21108ef6321ab6f3 authored over 15 years ago by Adrian Thurston <[email protected]>
CS is in use on OpenSolaris, changed to vCS(). Changed EOFV() to vEOF(). The

little v in front looks better than the big V on the end.

github.com/BioJulia/ragel - d2791f1496a79407548fd989b998b0acfea7cd62 authored over 15 years ago by Adrian Thurston <[email protected]>
Can't pass item->nameTarg->id into makeTargetItem. Just pass item->nameTarg and

derefence it after checking generatingSectionSubset. This bug crept in during
the merge of the fr...

github.com/BioJulia/ragel - 1619c9ddf57621d70ac1808be3c91c2407a25cfc authored over 15 years ago by Adrian Thurston <[email protected]>
Removed references to intermediate file parsers.

github.com/BioJulia/ragel - 3ac49c07c914f35a0c83b64a3d490a24175ec572 authored over 15 years ago by Adrian Thurston <[email protected]>
Don't try to install the backend manual pages.

github.com/BioJulia/ragel - a68b77edb479189d49522f0b03179b85c767ca63 authored over 15 years ago by Adrian Thurston <[email protected]>
don't need the codegen variable

github.com/BioJulia/ragel - 84670bbdb2f324f9adddc7646b7d62f108cb6b6f authored over 15 years ago by Adrian Thurston <[email protected]>
Documentation for 6.4.

github.com/BioJulia/ragel - 559050d951ad574044f64770a9590ec2b0860433 authored over 15 years ago by Adrian Thurston <[email protected]>
Added to paragraph on build_parsers.

github.com/BioJulia/ragel - 6645e3d393c19d5ede3f8d1d275f9baa9807254d authored over 15 years ago by Adrian Thurston <[email protected]>
Documented:

write start;
write first_final;
and write error;

github.com/BioJulia/ragel - 6a6f3e0c2220ff290a185ab6ec33c04fad2b19fa authored over 15 years ago by Adrian Thurston <[email protected]>
Got XML output working.

github.com/BioJulia/ragel - 371b0847f11096d02b9dfeb7ba4687b4fb75c54d authored over 15 years ago by Adrian Thurston <[email protected]>
The main inputData (id) is no longer a global. It is allocated in main() before processing arguments.

github.com/BioJulia/ragel - 67b0549e020a094e0bcc12d344c207e25ed7c4b1 authored over 15 years ago by Adrian Thurston <[email protected]>
Moved some global data into InputData. Not all there yet.

github.com/BioJulia/ragel - 732014b5bb64a0e17d7b68dfe0d84e72993918a3 authored over 15 years ago by Adrian Thurston <[email protected]>
Removed wantComplete and outputActive from InputData. The wantComplete var is

used in CodeGenData and can be set when the code generator is allocated. It
doesn't need to be pa...

github.com/BioJulia/ragel - 7f2d0dcb50edb5c5f47b453b3c7fd8c0640984bb authored over 15 years ago by Adrian Thurston <[email protected]>
Only one executable now. Specified which frontend languages support which code

generation options. Added the -x option to the visualization section (whole
dedicated section nec...

github.com/BioJulia/ragel - 57dc680e9af13214814aafe3219baa817b596814 authored over 15 years ago by Adrian Thurston <[email protected]>
Updated usage information concerning which host languages support which code

styles.

github.com/BioJulia/ragel - c642ec29914bf091aad5c74f634c2230d4eec25e authored over 15 years ago by Adrian Thurston <[email protected]>
Added a couple missing periods.

github.com/BioJulia/ragel - 920a9d42e3f841870badde48c9c9f126fca91a9a authored over 15 years ago by Adrian Thurston <[email protected]>
Removed backend manual pages.

github.com/BioJulia/ragel - 56d62c272946b4b78cb4bfa54e5aa9ba42ac555d authored over 15 years ago by Adrian Thurston <[email protected]>
Merged in remaining manual pages.

github.com/BioJulia/ragel - e95b247c46236ca2e6f42ace8c6da58e74bb97cb authored over 15 years ago by Adrian Thurston <[email protected]>
Merged in rlgen-java.1.in.

github.com/BioJulia/ragel - 3880c8074be99da20d9b6cc8ad797b65745a7f62 authored over 15 years ago by Adrian Thurston <[email protected]>
Merged contents of rlgen-cd.1.in into ragel.1.in.

github.com/BioJulia/ragel - 147880730182b08a8df246b72ea011096add73b6 authored over 15 years ago by Adrian Thurston <[email protected]>
The terminateAllParsers function moved into InputData.

github.com/BioJulia/ragel - 40dc2f05456f6e887cda7de7ce1a67b87ca69aee authored over 15 years ago by Adrian Thurston <[email protected]>
Improved graphviz output and got -M and -S working again.

github.com/BioJulia/ragel - d635cd1384c0bdefb1fc6e917b3ac6f54ed5468e authored over 15 years ago by Adrian Thurston <[email protected]>
Some function renaming.

github.com/BioJulia/ragel - af5e7945a376edf4b02465895751da289b8f558f authored over 15 years ago by Adrian Thurston <[email protected]>
Cleanup and code movement related to makeCodeGen.

github.com/BioJulia/ragel - 56bbb97452a5159b9ce6c6086c83d1d93fbd4981 authored over 15 years ago by Adrian Thurston <[email protected]>
Some more cleanup. Put a pointer to CodeGenData in ParseData and eliminate codeGenMap from InputData.

github.com/BioJulia/ragel - 8e59a57492f462e4080480de473911f0b0351be9 authored over 15 years ago by Adrian Thurston <[email protected]>
A bit more cleanup.

github.com/BioJulia/ragel - c04bb897f22f2e2d860c9d2dcc18ac297bf67ef7 authored over 15 years ago by Adrian Thurston <[email protected]>
Some cleanup of output stream opening.

github.com/BioJulia/ragel - 631a01e5b8256b89c984d03b5cd2ee285798ab17 authored over 15 years ago by Adrian Thurston <[email protected]>
We don't need to create allocate the outpute file stream and open the file at

the same time. Allocate the stream when the code generator is allocated, but
open the output afte...

github.com/BioJulia/ragel - 76ca78a66c859357f9d8ab4ab60fd308c18e07e0 authored over 15 years ago by Adrian Thurston <[email protected]>
Updated the help output. Moved some code from InputData:: to main.

github.com/BioJulia/ragel - 8e85b6685a46e9a4a542dca46a0e35ce4df8cde9 authored over 15 years ago by Adrian Thurston <[email protected]>
Need line directives ahead of the host blocks.

github.com/BioJulia/ragel - d9d8617f423e588c382118153bf082953bc09d5d authored over 15 years ago by Adrian Thurston <[email protected]>
Don't need the gperf keyword seaching anymore.

github.com/BioJulia/ragel - fc2d37a3c9a102893e6d10c5632c07cdbd6c45fa authored over 15 years ago by Adrian Thurston <[email protected]>
Fixed a problem reading hex numbers that have the high bit set when the

alphabet is signed and on 64 bit. Reported by _why. Fix provided by Wialliam
Morgan. The literal ...

github.com/BioJulia/ragel - 7b8608b8cb135aec31cefdebfc21ba0ac4b55fa0 authored over 15 years ago by Adrian Thurston <[email protected]>
added:

write start;
write first_final;
write error;

github.com/BioJulia/ragel - 26e9f4b8f98db81d4b256f844a83ab7f22b02b5c authored almost 16 years ago by Adrian Thurston <[email protected]>
Changed the names of the variables that represent the no* options.

github.com/BioJulia/ragel - e38f76bd7b01f7f0ae7522467dd72b60a0c485b6 authored almost 16 years ago by Adrian Thurston <[email protected]>
Fixed a copy-paste error reported by Jose Quinteiro.

github.com/BioJulia/ragel - f52e0a59420e8c8449c29d743686c562886b8ba1 authored almost 16 years ago by Adrian Thurston <[email protected]>
Updated the header define wrapper since renaming.

github.com/BioJulia/ragel - cf9e3ed1d4e0ab728bde59ce02cf42dfca12ce31 authored almost 16 years ago by Adrian Thurston <[email protected]>
Removed the hyphens from the file names.

github.com/BioJulia/ragel - 2b8ef958674784ae1795a0a7c45d5e498a8635f4 authored almost 16 years ago by Adrian Thurston <[email protected]>
More renaming.

github.com/BioJulia/ragel - efd0c928e60adbc0a2f1ac885abf10c1d9e021a9 authored almost 16 years ago by Adrian Thurston <[email protected]>
More cleanup ... dot and ruby file names.

github.com/BioJulia/ragel - d7dfa7ff940e899379b2a3e152efea909edc4955 authored almost 16 years ago by Adrian Thurston <[email protected]>
Cleanup of dot code generation.

github.com/BioJulia/ragel - 4395c7c156b1d2ce787fcc92c3d0079f8f6e7187 authored almost 16 years ago by Adrian Thurston <[email protected]>