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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
github.com/BioJulia/FactCheck.jl - 7a10a6af50acab9581e0d097627bf595ad1c1f0e authored over 11 years ago by Zachary Allaun <[email protected]>
github.com/BioJulia/FactCheck.jl - 5ddd6fca4eadd012a0074f782c88bdb14ef1022e authored over 11 years ago by Zachary Allaun <[email protected]>
github.com/BioJulia/FactCheck.jl - f7fba5f27d735923102c614b1e6c040a656591a8 authored over 11 years ago by Zachary Allaun <[email protected]>
github.com/BioJulia/Codecs.jl - ec6e2bf0568d5fd7fd6d9237f82d534481724454 authored over 11 years ago by Daniel Jones <[email protected]>
github.com/BioJulia/Codecs.jl - 2808944f8daeace3b03519164a5ab6108e150801 authored over 11 years ago by Daniel Jones <[email protected]>
github.com/BioJulia/Codecs.jl - ea4dc70d2bbad2407a492b4b89830d0a55b04193 authored over 11 years ago by Daniel Jones <[email protected]>
github.com/BioJulia/Codecs.jl - 127075587a7f2ab8492503d74deacbd1bb3fafce authored over 11 years ago by Daniel Jones <[email protected]>
github.com/BioJulia/ragel - dde4fdf705a6c5d0081e025987e140d02622d065 authored over 11 years ago by Anton Ageev <[email protected]>
github.com/BioJulia/Codecs.jl - d235d5a1cdbf56ca2bf8478c76922b1a4fbe0c7c authored over 11 years ago by Daniel Jones <[email protected]>
github.com/BioJulia/ragel - 0f9d3ef3eee4f1547e206a9c4d1cd8a6891fbca7 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a86a4ee9690c5485ec3c3df639facbe72dadf520 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - f03e9187fe21d5980a94b62485ba5e837bb0abfe authored almost 12 years ago by Adrian Thurston <[email protected]>
This value is determined by the code gen style and shouldn't be in the common
data structures. R...
Will use the size when calculating the size of tables of different styles.
Can't do it yet, beca...
This change results in fewer tests when ranges are adjacent.
github.com/BioJulia/ragel - 84edbd3c94da329159feacc51f52e9436677af63 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 23ff2423ad0a5c9c68b7f85e0c0eb604a90c5023 authored almost 12 years ago by Adrian Thurston <[email protected]>
Instead of always using the overall lower through all branches in the bin
search, track the know...
Removed the the binary search from IpGoto, can just use the one in Goto. Some
simplifications du...
github.com/BioJulia/ragel - 9e885069e226709241c609638fb4c7887dd14daa authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - bce417da127cfc175c3abf818b4e89c655065448 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 7a5c28b349996fa393dac80248e3addc84b2d137 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - f17e2cb10520efe7bd35c15c54e4e8b4dd47f37a authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 133b7d54ed31b86fbdc717a7a3a5ecc5f97cca99 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 0ed3340f985a54b1888b21842a23a8b7e27ebdd5 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 65bc1bb9eebbd241115f2ff3b94004a9153e298a authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 845ba548873c37e6c1942dd566bb3713864fb128 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 458765a7b737fb2e5fa076762955ae57804cf650 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 94edc41705611efee3c60f911793b59d87266823 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 4abf7d2a964b2182327b663ab2423502685194ad authored almost 12 years ago by Adrian Thurston <[email protected]>
Fsm operations now check the context pointer, they must point to the same
instance. Using the co...
github.com/BioJulia/ragel - 2de3db35de1dcc38fa5a354cc7d978ca4e7bbc27 authored almost 12 years ago by Adrian Thurston <[email protected]>
The context is owned by ParseData and passed into the FsmAp constructors. Must
always use the sa...
Will move keyOps and condData into a context data structure so they are not
global. Prefixed wit...
github.com/BioJulia/ragel - 96eeba274bb601a0bc8a158df2d3fdc22a59d720 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - d3fac59771a575d63992a8f7c2d105ad1b016dfc authored almost 12 years ago by Adrian Thurston <[email protected]>
If the 'act' variable is not used anywhere then don't initialize it in the init
section. The use...
github.com/BioJulia/ragel - 9dda7ed745e6c3e9e90e32d9c3dfd996aafba0d6 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3b9788926e9916513383ee5e2ccb861d2943c0e9 authored almost 12 years ago by Adrian Thurston <[email protected]>
Filled in more of the ragel test case parser. Now parsing all of the language
independent test c...
github.com/BioJulia/ragel - 2dfaa2f1034b6efdd77cb0766a781f04c2c53da9 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3c6ccead5388147bd18f5328fa6a1084e628ca7b authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 70b29e96cc7ad10a9de58777d59ee4e388d98bd7 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c131df6b0777197eb99d67c01e98a6a3558e1faa authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 6c89ec7c97dbf45cea1df6b5ef7ea63eb6da5471 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c5bc68baffd7f0db8afe12d0de15d7ebe0850c6f authored almost 12 years ago by Adrian Thurston <[email protected]>
It is now part of the generator API. Will now remove some of the more obscure
functions.
github.com/BioJulia/ragel - 0bf6aaafbe9bd2e60207e970435540879aaa0b51 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 139116bb648b00db70c6a57930ac005b5c46efb1 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 74d8a6abc3a28c655f47d5ba4d105ad170272de7 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 109a4151cc71434d4034a109c160da61ff099e05 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 0b3c8ce9e99e478a1f2dd8671c088851560fc09b authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - bd152ca4149a3998682c4daa33f453e37b93601b authored almost 12 years ago by Adrian Thurston <[email protected]>
removed OPEN_ARRAY, CLOSE_ARRAY, STATIC_VAR, UINT, CAST.
github.com/BioJulia/ragel - 273e2d51502ef4d668446f9dbd8c5a68da36e7b0 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - f3715120a1130807d0f11504fa5b5eaf66394099 authored almost 12 years ago by Adrian Thurston <[email protected]>
Neither of these had any effect in C code, they were there for D.
github.com/BioJulia/ragel - 063ac60a144f1faf7c096c6a402b6e7b3c318ad0 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 27545ea99ee523cd150cf9aed8be40a7664b186b authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 11e1c8376d639819b750f4f9ad9a54ddd75e03fe authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 8e1268d3bed9868499d403dafd3104cd2c17f88f authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 827852789d3b1d51accb6e9ce292b4343992b40e authored almost 12 years ago by Adrian Thurston <[email protected]>
This bug led to incorrect actions/targets getting set in conditions two and on.
github.com/BioJulia/ragel - a9c28b2295fd344b906a82860080de5c37711f39 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 50657a1dd5e64fba1a57b8060ac85dc855658d4f authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - d8c7890b0b769ca18ba1d1aed663759452887df4 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 57371d930798aca9a0491388eebb5db7589700c0 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 4143eddc0a5621bb3cfebb5e5854cf7f6c05c6aa authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a628440aefab0e48f05e0eef087df48a9db1eb6b authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 09bbdfa40478da6c3644cb9747c074f9a2d12db8 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - f451363290fe414d07b250c095c368121f7fba4a authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - ce9561d2ae97e95b58938d07cad7e4e6b723ee59 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 40db54825dda3abe6e55f21776e7ccb61ba57f85 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - fde747c5f2a2d043b9224319a49f606c79a8390d authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 3a53a15a391935178c8ce07d7bd1e7ead2a89b86 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - b202337d41bdfd08a7cb891b04804774287a62ed authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 02b166b49319fe4ca62b74ef0fad29f23bed3198 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 6a1783f38aab4ce3e5bae45e508e435ae5f9dc7e authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - f81be9a885c2226a116e9460f1d99f967229ec2f authored almost 12 years ago by Adrian Thurston <[email protected]>
converted keys and also moved the actions table array out of CodeGen
github.com/BioJulia/ragel - 0429f37273d8b6531ec2f2100652bf39ee496728 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 34b8cabdb3a02276ffad63ab405cb9d836ff9623 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 81fae5246624027b05d37f8d09af1abc4101a6ff authored almost 12 years ago by Adrian Thurston <[email protected]>
Had code in parent and in one child.
github.com/BioJulia/ragel - 95c83c2b8ca04e5775ae1d74b87849e6eed57ccc authored almost 12 years ago by Adrian Thurston <[email protected]>will likely rename as such
github.com/BioJulia/ragel - 626d1a1dcea565873b8dc0916f283169ed85e141 authored almost 12 years ago by Adrian Thurston <[email protected]>github.com/BioJulia/ragel - 7c2838d4e33b8bec2db2c77f54cc8d82f78189e6 authored almost 12 years ago by Adrian Thurston <[email protected]>
The binary search code generators just have keys left to convert. This requires
specifying the t...
github.com/BioJulia/ragel - 1edb226e4e2345cfd5b9139d95315a836cc3eb20 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - c3cd5b794d1f6e9cbfc11567f91009c27d908b98 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - efe90db915e629527708b26a2c81f86fcbd29bcf authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - fb71dd01715193cf507dc8b8ad14bcf61a8a04fb authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 320088fee27a2facd71972069ebbe64c2cf5d056 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 6423009693b83b9ef36fdd4eee58d65120ba49a2 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - e8f301c69f04c3d4713f4981c066ecdede697624 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 9d98446be99e83c4265fc963d97741482a36abcd authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - fbb3131693f16408ea7d9f1bff321753e8d4b90b authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - a80d9b6ec05b8e32eb5d242f8fca2ba510dde463 authored almost 12 years ago by Adrian Thurston <[email protected]>
CondTransList -> CondList
ctList -> condList
github.com/BioJulia/ragel - 9ec44d6f70c27eaf6bcc8475b159a0a60f8755f5 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 5b63f8525464dbcd323c8db389bc3ab492507c71 authored almost 12 years ago by Adrian Thurston <[email protected]>
github.com/BioJulia/ragel - 5ea371a7667392f93bd863f0bc0f2a6c846caf52 authored almost 12 years ago by Adrian Thurston <[email protected]>
The error action is getting run on non-error transitions. The condition
implementation is not ye...
The compress transitions was using the ctList length to check for a lack of
conditions, this isn...
Resulted from series of transformations to introduce condition code.
github.com/BioJulia/ragel - dd502fe294f74b8f619e0db96db96b701ddd4367 authored almost 12 years ago by Adrian Thurston <[email protected]>It is somewhat easier to read now.
github.com/BioJulia/ragel - 0159884e158fb5a3e0582e10ac020220a7b5b615 authored almost 12 years ago by Adrian Thurston <[email protected]>