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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

allow -i on the end of string lits

github.com/BioJulia/ragel - 36ce53b9e8fbb44144210958b86fe2cf6db503fe authored about 11 years ago by Adrian Thurston <[email protected]>
load factor_neg

github.com/BioJulia/ragel - 7b6476ae69447d6da2d8073a143d2a45fb70d626 authored about 11 years ago by Adrian Thurston <[email protected]>
load access statement

github.com/BioJulia/ragel - 65f2ec7bc2823474ca386c359ceb56b8e2f7577c authored about 11 years ago by Adrian Thurston <[email protected]>
Revert "warning fix"

This reverts commit 19dbb204b65e954643bebd78c0a69c26de6c69e9.

The warning exists because the ac...

github.com/BioJulia/ragel - fae0107dcdaaed9f8586950fcfb79ea68f9e35ea authored about 11 years ago by Adrian Thurston <[email protected]>
load alphtype

github.com/BioJulia/ragel - 9c79986612ac4890ea3b7fa82a8c117031d991d0 authored about 11 years ago by Adrian Thurston <[email protected]>
implemented epsilon transition load

github.com/BioJulia/ragel - 08b5ad81cac6bfb25bfe6dcd7dfe598085bede0d authored about 11 years ago by Adrian Thurston <[email protected]>
implemented the getkey load

github.com/BioJulia/ragel - 4cfec13d4d0eed35c451549463187096710cbdd2 authored about 11 years ago by Adrian Thurston <[email protected]>
load the numbered repetition productions

github.com/BioJulia/ragel - 8d8664ae283fa225d36f3d4b3479d8b5c354aa20 authored about 11 years ago by Adrian Thurston <[email protected]>
don't stop at parsing anymore, run the full test

github.com/BioJulia/ragel - c7467ed400459770bddac9ac39eb795904cb547d authored about 11 years ago by Adrian Thurston <[email protected]>
warning fix

github.com/BioJulia/ragel - 19dbb204b65e954643bebd78c0a69c26de6c69e9 authored about 11 years ago by Adrian Thurston <[email protected]>
Remove `@fact ... => :throws` in favor of `@fact_throws`

github.com/BioJulia/FactCheck.jl - a0421f2ddadd2a5c059e11034b5f5653e660d1e1 authored about 11 years ago by Zachary Allaun <[email protected]>
Fix `getline`

github.com/BioJulia/FactCheck.jl - 02da68c8ff6c6c4ca972e473979437a213d012a8 authored about 11 years ago by Zachary Allaun <[email protected]>
`error_show` deprecated, use `showerror`

github.com/BioJulia/FactCheck.jl - 22e508300375758fac7b275848282800fe686a71 authored about 11 years ago by Zachary Allaun <[email protected]>
load named prior embeddings

github.com/BioJulia/ragel - c5d3b88df4290f89b395187175e13e44e5b44ba5 authored about 11 years ago by Adrian Thurston <[email protected]>
full regex load

github.com/BioJulia/ragel - 0516ba87515c80a87bad6ff436452e9f9978357b authored about 11 years ago by Adrian Thurston <[email protected]>
fixe for array alloc in escape routine

github.com/BioJulia/ragel - bbeadd7e2a741114b21473c56c7676258cd3764f authored about 11 years ago by Adrian Thurston <[email protected]>
regex parsing with a grammar, fixed variable parsing

Parsing regexes with a grammar (as opposed to token), can now add loading.

Can't use word for t...

github.com/BioJulia/ragel - 37f11efc2683899f225941ac4d3c25844d4650c1 authored about 11 years ago by Adrian Thurston <[email protected]>
load regex or data, mostly ripped from colm

github.com/BioJulia/ragel - 8f064ddf11513a62dedb00599b63bbe95c4f15ce authored about 11 years ago by Adrian Thurston <[email protected]>
load action block embeddings

github.com/BioJulia/ragel - ed1a4966f44c25c140372e76a5e0f7cb2a0b2c93 authored about 11 years ago by Adrian Thurston <[email protected]>
implemented some of repeat operator load

github.com/BioJulia/ragel - 24d069efe77594e962d3fbc161326752d55166db authored about 11 years ago by Adrian Thurston <[email protected]>
load all the term operators (not just dot)

github.com/BioJulia/ragel - f1ea9533b4990f6becf229a60fa6a465f929fc4d authored about 11 years ago by Adrian Thurston <[email protected]>
load all four expression ops

github.com/BioJulia/ragel - 2d063ab3a1571da90acffb3e056ef17bf64a2fcf authored about 11 years ago by Adrian Thurston <[email protected]>
load different types of base embeddings and priorities

github.com/BioJulia/ragel - de1aca137491584910684a591f275e2402b3ce2b authored about 11 years ago by Adrian Thurston <[email protected]>
load union operator

github.com/BioJulia/ragel - 560af2af9a82d2e41da67cc0f5de92cfe2a170b9 authored about 11 years ago by Adrian Thurston <[email protected]>
fixed host data append after write, added load of variable statement

github.com/BioJulia/ragel - c32a999116e6f3e65bdd050f4a626ab619ba7284 authored about 11 years ago by Adrian Thurston <[email protected]>
work on term lists and action embedding

github.com/BioJulia/ragel - 2739a4fb674ebd6aa565397669751f20065067cb authored about 11 years ago by Adrian Thurston <[email protected]>
work on the load for factor

github.com/BioJulia/ragel - f07f28ce924ce7cf7ca822d54b4fa9e6ab75d0ae authored about 11 years ago by Adrian Thurston <[email protected]>
load the write command and write args

github.com/BioJulia/ragel - 75795d2b7d556cf0ec7fd179718a5b1009ccb7bd authored about 11 years ago by Adrian Thurston <[email protected]>
added enough of the expr loader to generate a simple machine

github.com/BioJulia/ragel - 877057700a109671927ff013722c6c19385dce06 authored about 11 years ago by Adrian Thurston <[email protected]>
work on loading inline lists

github.com/BioJulia/ragel - b99bd88091d7f25f1262a5750a1687520c88b017 authored about 11 years ago by Adrian Thurston <[email protected]>
work on inline code parsing, test suite passes parse

github.com/BioJulia/ragel - 04651b736efa560727ac56599b605d789bf909ea authored about 11 years ago by Adrian Thurston <[email protected]>
Merge branch 'master' of ssh://complang.org/var/git/ragel

Conflicts:
src/ragel.lm

github.com/BioJulia/ragel - 43bbe96c299011647cd0aa388097be1a661ff7e4 authored about 11 years ago by Adrian Thurston <[email protected]>
minor breakdown of c_inline::inline_expr

github.com/BioJulia/ragel - 08ed920043e6705f5e3436f5072877914d85cfce authored about 11 years ago by Adrian Thurston <[email protected]>
use token-induced reparse for ';'-terminated inline expr

github.com/BioJulia/ragel - 1d6cc712d0605b10b7ffca2cd01daeb25ee0ee3d authored about 11 years ago by Adrian Thurston <[email protected]>
added loads for prepush and postpop

github.com/BioJulia/ragel - e925df4c9ca379c871995a5f38f4ff197d81b0b9 authored about 11 years ago by Adrian Thurston <[email protected]>
create parse data structs when machine statements are encountered

github.com/BioJulia/ragel - 90805bbc1227ca06c6ba7455f174824b1bc0782c authored about 11 years ago by Adrian Thurston <[email protected]>
loading action definitions

github.com/BioJulia/ragel - becb7623034f35f66f7d31fe0473f7f0915ca4b7 authored about 11 years ago by Adrian Thurston <[email protected]>
Fix zlib on 32-bit systems.

github.com/BioJulia/Codecs.jl - fd8881663fa2c12da4cf96b04bc487f402d32bf9 authored about 11 years ago by Daniel Jones <[email protected]>
use a token trans block to turn single line regions into multi-line

The grammar no longer needs to support single line expressions. These were a
problem because of ...

github.com/BioJulia/ragel - 45a0d2b1a6e4a398ab33c38e2a3267ca4839d92b authored about 11 years ago by Adrian Thurston <[email protected]>
test translation program depends on main ragel grammar

github.com/BioJulia/ragel - 7952ac416f451297d67653fc16404a3ec1d2ffab authored about 11 years ago by Adrian Thurston <[email protected]>
loading and passing host code through to tail input data item

github.com/BioJulia/ragel - 0ded7549f499f858f1f03e2c3b1eff92af3c90d9 authored over 11 years ago by Adrian Thurston <[email protected]>
no longer linking/including the ragel/kelbt parser

github.com/BioJulia/ragel - c097ce68e4da9746e027bcf6e00a03fa099c8a90 authored over 11 years ago by Adrian Thurston <[email protected]>
invoke the colm-based test translator, stop testing at parse

github.com/BioJulia/ragel - 17458c13af19912e0d995a44270c234ae86ecc70 authored over 11 years ago by Adrian Thurston <[email protected]>
breaking ragel: run the colm parser by default

github.com/BioJulia/ragel - 26762b80f1f8b44f113db37cc2d65f53645d0ceb authored over 11 years ago by Adrian Thurston <[email protected]>
added a grammar for language-independent host code

github.com/BioJulia/ragel - b552ec9ee869bfee465013d03e238d122efaaaef authored over 11 years ago by Adrian Thurston <[email protected]>
pass ragel sections through

github.com/BioJulia/ragel - a7c131b358f2661f645d8beac555dad3c6396a02 authored over 11 years ago by Adrian Thurston <[email protected]>
split out the ragel grammar from the driver

Will use this grammar for transforming test cases.

github.com/BioJulia/ragel - f5b3810d882a66aa22c5abd947096ed16d81c774 authored over 11 years ago by Adrian Thurston <[email protected]>
some augmentation operator fixes in the colm grammar

github.com/BioJulia/ragel - 28a5a0143aa6f78aa8c7ab30fa7d713192a557f1 authored over 11 years ago by Adrian Thurston <[email protected]>
various work on colm-grammar for ragel

The C/C++ test cases will parse, though the detail isn't fully there.

github.com/BioJulia/ragel - 7ec23c1c7cfbc2c82535010b87512d61be83fb85 authored over 11 years ago by Adrian Thurston <[email protected]>
fixed dependencies on colm-generated code following file renames

github.com/BioJulia/ragel - 61f74e1f57d3e75ea7564c61f2158bedbee7e7c8 authored over 11 years ago by Adrian Thurston <[email protected]>
Pop off test handler when finished

github.com/BioJulia/FactCheck.jl - dec35a8981cb5b7e280cdf705adfba50c2a26142 authored over 11 years ago by Zachary Allaun <[email protected]>
Make color escape codes constants

github.com/BioJulia/FactCheck.jl - ab2329dc97983351be0de1a8a081c258caf9aa94 authored over 11 years ago by Zachary Allaun <[email protected]>
Add fact generation example

github.com/BioJulia/FactCheck.jl - f86191e5b02ed2508f19505634972ea61cf71479 authored over 11 years ago by Zachary Allaun <[email protected]>
Bump minor version

github.com/BioJulia/FactCheck.jl - 4a01a024f9924cb24e0b4a5a05f7f6363ea88f6d authored over 11 years ago by Zachary Allaun <[email protected]>
New fact grouping syntax using `context`

Instead of passing a block to `@fact`, a new function `context` is introduced to group related f...

github.com/BioJulia/FactCheck.jl - 30402873d5dffa7c4840cf7744b28798bf636bbb authored over 11 years ago by Zachary Allaun <[email protected]>
`@facts` macro becomes a function

github.com/BioJulia/FactCheck.jl - 8f828a42ff14f1a3fcc30483a601e6104f20cf40 authored over 11 years ago by Zachary Allaun <[email protected]>
Make `TestSuite` filenames optional

github.com/BioJulia/FactCheck.jl - 97245a353ea9e243bc964ca163d6b74fa7b260d8 authored over 11 years ago by Zachary Allaun <[email protected]>
Remove union type from facts description

github.com/BioJulia/FactCheck.jl - 9bec1c7a4b045d5ae349e83776dd1f9cd5212252 authored over 11 years ago by Zachary Allaun <[email protected]>
check the input file, open, parse using colm

github.com/BioJulia/ragel - e2120915049cee8098121cec0314117c10ac4754 authored over 11 years ago by Adrian Thurston <[email protected]>
call into ragel.lm when -c option is given

github.com/BioJulia/ragel - dde145e4b491528008f9894b970d3c930cc9a99e authored over 11 years ago by Adrian Thurston <[email protected]>
link in a colm-generated grammar

github.com/BioJulia/ragel - 943d904fd469f27cc9f90a3974ea66aaa5037442 authored over 11 years ago by Adrian Thurston <[email protected]>
depend on colm 0.11

github.com/BioJulia/ragel - 6f0c8a9da39d569396f7c4f0820ff241d8a9f056 authored over 11 years ago by Adrian Thurston <[email protected]>
updated the tex file (generated from txt)

github.com/BioJulia/ragel - 69cba2aa893ee89551bbbc2880072951f3052224 authored over 11 years ago by Adrian Thurston <[email protected]>
Update README to document BCD support

github.com/BioJulia/Codecs.jl - 972243bc4ae93377825e1d6726e6fff8954d1e23 authored over 11 years ago by timholy <[email protected]>
Add binary-coded decimal support

github.com/BioJulia/Codecs.jl - 972b182d53c5a32d3d1144fc3e67a7c7a23d88b3 authored over 11 years ago by timholy <[email protected]>
Merge pull request #7 from tlycken/roughly-fix-iss6

Fixed roughly after updates to isapprox, fixes #6

github.com/BioJulia/FactCheck.jl - 7aa92673e7af4e2903566aa415641f3574480aae authored over 11 years ago by Zach Allaun <[email protected]>
Fixed roughly after updates to isapprox, fixes #6

github.com/BioJulia/FactCheck.jl - 3b2f6d4de87221fc8b08feb5280fb37aecd23cf6 authored over 11 years ago by Tomas Lycken <[email protected]>
The death of `nearequal`

github.com/BioJulia/FactCheck.jl - 69edce9891e3eaef0c97aa58129932d529ce639c authored over 11 years ago by Zachary Allaun <[email protected]>
Fix decoding base64 strings. (fixes #2)

github.com/BioJulia/Codecs.jl - 71721639a23f4fa8a0c93f7107dd062679c79e45 authored over 11 years ago by Daniel Jones <[email protected]>
`do_fact` returns the test result

This is helpful if using FactCheck in the REPL -- you don't have to wrap
everything in a `@facts...

github.com/BioJulia/FactCheck.jl - 7be923d65981ce3780b6cd39bd94256f95a4c1ad authored over 11 years ago by Zachary Allaun <[email protected]>
Fix regression caused by #103730

github.com/BioJulia/FactCheck.jl - e0253ae7af5a0134cb9b9e6aad32a8c019d710cb authored over 11 years ago by Zachary Allaun <[email protected]>
Merge pull request #5 from tlycken/master

Roughly for arrays

github.com/BioJulia/FactCheck.jl - 103730367f29f8d16aceccd85ee33f826a15e50e authored over 11 years ago by Zach Allaun <[email protected]>
Removed some junk comments that were laying around

github.com/BioJulia/FactCheck.jl - 58124dfc19f8bc8b2f5fbe262c9e1248216350ca authored over 11 years ago by Tomas Lycken <[email protected]>
Added roughly for arrays

* Roughly works with arrays, element-wise
* Roughly uses isapprox from julia/extras

Also fixed ...

github.com/BioJulia/FactCheck.jl - f407ec527796c09cdb450484ff729dcfb133db07 authored over 11 years ago by Tomas Lycken <[email protected]>
test for colm, require 0.10, updated colm programs to 0.10 syntax

github.com/BioJulia/ragel - 759fba231f23afe52f159653c513871a161b52ed authored over 11 years ago by Adrian Thurston <[email protected]>
Require julia 0.2-

github.com/BioJulia/FactCheck.jl - 0967bf14517d1f829de0e3563d5742a817199e93 authored over 11 years ago by Zachary Allaun <[email protected]>
Retain expression values for display

github.com/BioJulia/FactCheck.jl - 7d1d9da10ffc1e3d9a3714bae31dd4074d1edff9 authored over 11 years ago by Zachary Allaun <[email protected]>
Adds installation info to readme

github.com/BioJulia/FactCheck.jl - 8135aeaf0d441884201fd50d08a7348f6f78fc8b authored over 11 years ago by Zachary Allaun <[email protected]>
Changes README image to reflect changed name

github.com/BioJulia/FactCheck.jl - 595de85f5f7f6e0abb3cd82a068f913521acb5b2 authored over 11 years ago by Zachary Allaun <[email protected]>
Renames DeFacto to FactCheck

github.com/BioJulia/FactCheck.jl - c13d7fddd419985471304ad6d556c17787533888 authored over 11 years ago by Zachary Allaun <[email protected]>
GitHub repo has been renamed to DeFacto.jl

github.com/BioJulia/FactCheck.jl - da2f42f51310b7c1c49755093711c41d63a52758 authored over 11 years ago by Zachary Allaun <[email protected]>
Updates README significantly

github.com/BioJulia/FactCheck.jl - af6630bf9a08810d5d84a1cad2b15c681198ccf1 authored over 11 years ago by Zachary Allaun <[email protected]>
Move example_defacto.jl back into src/

github.com/BioJulia/FactCheck.jl - 6a8b020de26aad5877da111eefa6651c6b3a7832 authored over 11 years ago by Zachary Allaun <[email protected]>
DeFacto tests itself!

github.com/BioJulia/FactCheck.jl - 7fbe49c4ae3cf87df1f01614753bedbc442ed508 authored over 11 years ago by Zachary Allaun <[email protected]>
Adds fact descriptions to failure ouput

github.com/BioJulia/FactCheck.jl - 2fab00a6469e4d87683ac48981816105f5403c7f authored over 11 years ago by Zachary Allaun <[email protected]>
Includes @fact descriptions

github.com/BioJulia/FactCheck.jl - df6f9953e152ee696571bd8f641b7fef2c08a438 authored over 11 years ago by Zachary Allaun <[email protected]>
Adds MIT License

github.com/BioJulia/FactCheck.jl - 60afbd342517f71a443664704b31e63b7b77e00d authored over 11 years ago by Zachary Allaun <[email protected]>
Replaces `print_*` with `show` and documents code

github.com/BioJulia/FactCheck.jl - c7ba8bb6ff99ae771603535ead9910457513b087 authored over 11 years ago by Zachary Allaun <[email protected]>
Adds assertion helpers

not, truthy, falsy, anything, exactly, roughly

github.com/BioJulia/FactCheck.jl - 5cec3b4542167a9264ebd4db8383f7d6d0db8851 authored over 11 years ago by Zachary Allaun <[email protected]>
Removes nresults from TestSuite; adds error count

github.com/BioJulia/FactCheck.jl - af5ee077dbc27269b1dfa3688d09886237d54058 authored over 11 years ago by Zachary Allaun <[email protected]>
Multiple @facts blocks print cleaner

github.com/BioJulia/FactCheck.jl - e8f9c29bdfac6533064427174e709a955104313f authored over 11 years ago by Zachary Allaun <[email protected]>
Prints Errors instead of rethrowing

github.com/BioJulia/FactCheck.jl - 4184eb3bd391181f116ce9f0e5b461996839bb6b authored over 11 years ago by Zachary Allaun <[email protected]>
Adds :throws assertion

github.com/BioJulia/FactCheck.jl - 027063fec1aab99be35450f860edc3bbf8c9e8e2 authored over 11 years ago by Zachary Allaun <[email protected]>
Moves stuff around

github.com/BioJulia/FactCheck.jl - 0f2e5b7de7efd0075da8f5cfacad518f4882f010 authored over 11 years ago by Zachary Allaun <[email protected]>
Removes unused process_fact method

github.com/BioJulia/FactCheck.jl - bdcd06900ab432874a418780a649be08b61520da authored over 11 years ago by Zachary Allaun <[email protected]>
DeFacto no longer relies on Base.Test

github.com/BioJulia/FactCheck.jl - 91675ea05411e9ade864036d924fb6e13737c6a0 authored over 11 years ago by Zachary Allaun <[email protected]>
Allows for fact-local variables

Basically:
@fact begin
x = 10
x => 10
end

github.com/BioJulia/FactCheck.jl - c9ba4e241646fcd3ffc71d6d2b6ef822c2028305 authored over 11 years ago by Zachary Allaun <[email protected]>
Adds line numbers and file name to test output

Closes #1

github.com/BioJulia/FactCheck.jl - f8adfeb837533e2638fd7e3343ccc00b61d93927 authored over 11 years ago by Zachary Allaun <[email protected]>
Fixes user-defined function error

github.com/BioJulia/FactCheck.jl - 5885d8c83ed6421d50f6330d74d5f91edd50ee1a authored over 11 years ago by Zachary Allaun <[email protected]>
Format failure output in a non-insane way

github.com/BioJulia/FactCheck.jl - 709276b65e968cbc8649de50160ebf588539cf7b authored over 11 years ago by Zachary Allaun <[email protected]>