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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

rlhc: fixed a couple missing uses of offset construct

github.com/BioJulia/ragel - c6e999adb1b87db99da4dc25096eec47796b9c85 authored almost 11 years ago by Adrian Thurston <[email protected]>
added explicit fallthrough

Nothing generated for C. In D 'goto case' is written.

github.com/BioJulia/ragel - b1048d2c2dbde6e62d136fe3c4fb81088b091c3e authored almost 11 years ago by Adrian Thurston <[email protected]>
fixed host-embedded generated code in C, was calling D funcs

github.com/BioJulia/ragel - 94db9c9b6303234ede1fe9d905399732376843b0 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added syntax for export and codegen to C and D

github.com/BioJulia/ragel - 0a46c9aceb4e81c16d5c63a9f87c36f527efcb18 authored almost 11 years ago by Adrian Thurston <[email protected]>
support generated code within host code

github.com/BioJulia/ragel - c614807d2b1dce837fe6ed343d72b8866d013508 authored almost 11 years ago by Adrian Thurston <[email protected]>
updates for D2 in cppscan5

github.com/BioJulia/ragel - a23516d1922289c3b1ea22d58bcd3211484ab79d authored almost 11 years ago by Adrian Thurston <[email protected]>
added nil to the syntax, translate to 0 in C and null in D

github.com/BioJulia/ragel - 910be1ee65f16c6634ea6727cd8647853ee7d052 authored almost 11 years ago by Adrian Thurston <[email protected]>
updated tests to D2

github.com/BioJulia/ragel - c1cd7ddfb2728b49b055858c3d5bffbf5828b3e6 authored almost 11 years ago by Adrian Thurston <[email protected]>
added explit fallthroughs to all D switch statements

Eliminates errors, but adds warnings. Correct solution is to be explicit about
where the fallthr...

github.com/BioJulia/ragel - 73308cd9b9ad0c09e84ec16b6bf2bb45fdd26a83 authored almost 11 years ago by Adrian Thurston <[email protected]>
added default cases to all D switches

github.com/BioJulia/ragel - 71bb4bdbd59243e04f3cac8aef76cd69ae27c576 authored almost 11 years ago by Adrian Thurston <[email protected]>
remaining use of offset struct for D codegen

github.com/BioJulia/ragel - cd35756c2ca4cb60c3448e5e5b29a105247dab8a authored almost 11 years ago by Adrian Thurston <[email protected]>
recognize const in declaration and use the appropriate syntax in D

github.com/BioJulia/ragel - 26d99b7dd5b05d93ba1bd9a3126bdd3915584216 authored almost 11 years ago by Adrian Thurston <[email protected]>
use the offset syntax for ckeys

github.com/BioJulia/ragel - 6394ce5c8dd55644d21e95907221ca7b92b3e5f4 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added a syntax for array offset

Can't do pointer arithmetic in D, as is done in C.

github.com/BioJulia/ragel - 8a459b2a9db90c2e7ad65022ccdab82cf02f935c authored almost 11 years ago by Adrian Thurston <[email protected]>
invented some types for array declarations, translating in C and D

Note that we are fixing the size of the types in C and this will need to be
fixed. Good chance w...

github.com/BioJulia/ragel - 903be346717b98572bd97b83fb0fd9c1a764c6ae authored almost 11 years ago by Adrian Thurston <[email protected]>
use string::empty to determine if table array type needs to be set

github.com/BioJulia/ragel - 2b669cde5998d4eb711f3ad1e88e62820f61679a authored almost 11 years ago by Adrian Thurston <[email protected]>
corrected S64BIT_MIN

github.com/BioJulia/ragel - c3a93837dc96d1529dba8c38be978c51bcece703 authored almost 11 years ago by Adrian Thurston <[email protected]>
added min and max values to the array declaration

This will allow us to choose the type for the array in the code generator.

github.com/BioJulia/ragel - a8aa2b2b4e0c5bf00abf10c4be1e6e1149477d0b authored almost 11 years ago by Adrian Thurston <[email protected]>
use zero for default min and max because we null terminate all arrays

github.com/BioJulia/ragel - 9729e44647defa77377ab8ce2cea5fe53b025690 authored almost 11 years ago by Adrian Thurston <[email protected]>
added the cast keyword to type casts in D

github.com/BioJulia/ragel - 26382fb243c36cbb43020f12e29f9058b911881c authored almost 11 years ago by Adrian Thurston <[email protected]>
added type to the grammar, translating unsigned int to uint in D

github.com/BioJulia/ragel - f6658f064a18fab670446afae5fb5fbba9e17e8a authored almost 11 years ago by Adrian Thurston <[email protected]>
support D array syntax

github.com/BioJulia/ragel - bfb4d49fbfd955914fa4a03ab4eae8557a885e85 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: cloned C translator as start of D translator

github.com/BioJulia/ragel - 43264ad09a2cfd6c691087966b4a143642cd86eb authored almost 11 years ago by Adrian Thurston <[email protected]>
removed generated comments

github.com/BioJulia/ragel - fcee6f9e213c04f5eb0981eb89f01b0fe4d8ff66 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: moved c code generator to its own file

github.com/BioJulia/ragel - 6e76f9772b3dabd31ab31076c9a0a7ca52700332 authored almost 11 years ago by Adrian Thurston <[email protected]>
printing captured literals so whitespace is preserved

github.com/BioJulia/ragel - 52326264b3a6863d75ead992bb53737c65e91b9f authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: built out the expression parser and translator

no longer using token lists to catch text unstructured

github.com/BioJulia/ragel - 74949b7b84a826fd27d6ea1a2e7224eaa5278418 authored almost 11 years ago by Adrian Thurston <[email protected]>
removed the token catch all from gen namespace

github.com/BioJulia/ragel - ac6a71e617dbcd7ac24bd2db52ca086ea1277054 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added if, while, switch and more of expressions

github.com/BioJulia/ragel - 811c72adaa840d42210924d71cfb3099c7f48c7a authored almost 11 years ago by Adrian Thurston <[email protected]>
made the while statement generic

github.com/BioJulia/ragel - 154e4280f70451a9a4667b1949ed78b740454a45 authored almost 11 years ago by Adrian Thurston <[email protected]>
use the input filename stem as the root for .ri filename

github.com/BioJulia/ragel - 5b4758811414d9aa0ddf49ef215c2ce6b1a8033d authored almost 11 years ago by Adrian Thurston <[email protected]>
turn off the unlink of the intermediate file

Temporary. Need to look at it quite often while developing rlhc.

github.com/BioJulia/ragel - 2238891a1675801f80efd7b2ba1b18bb9dd2a871 authored almost 11 years ago by Adrian Thurston <[email protected]>
removed C and XML dirs: had only makefiles

github.com/BioJulia/ragel - 0db7b468108010a463bc0ad427a05e0e36805bcf authored almost 11 years ago by Adrian Thurston <[email protected]>
added a syntax for while (1), explicit recursion in trans

github.com/BioJulia/ragel - a429513903261a3785813b20293be5cc579298bf authored almost 11 years ago by Adrian Thurston <[email protected]>
flattened code tree using C codegen

github.com/BioJulia/ragel - 32afee3e951e1c97e0aaf12b9886923360811416 authored almost 11 years ago by Adrian Thurston <[email protected]>
moved the static const keywords on arrays and vars to rlhc

github.com/BioJulia/ragel - 73dd514807a5d60c342e5f02c697bf4b58844e3c authored almost 11 years ago by Adrian Thurston <[email protected]>
removed #host and #gen directives from host code passed through

github.com/BioJulia/ragel - 478721e191f7232e435245e6d6528658be5838a0 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added syntax for single values

github.com/BioJulia/ragel - 239a15cf2a6b41b178c42dd7bab3980582c9bc3a authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added grammar defs for arrays

github.com/BioJulia/ragel - f3f2ef00e988c47d703df4caa22bbfbd88dc3bec authored almost 11 years ago by Adrian Thurston <[email protected]>
use distinct tokenizers for host code and generated code

Also eliminated the language-specific line directives. We just indicate the
line at the beginnin...

github.com/BioJulia/ragel - 90b454033aa85e22e933838de69c595cf16062df authored almost 11 years ago by Adrian Thurston <[email protected]>
unique tok list for host code, strip off the delimiters

github.com/BioJulia/ragel - 5b20c8d7aa4f978540425c3d832152c46f075bbd authored almost 11 years ago by Adrian Thurston <[email protected]>
wrap host text in ${}$

The intermediate file starts as generated code. Will use %{}% for nested
generated code.

The de...

github.com/BioJulia/ragel - a0fdcb1520fe89433b974daa5d52a2fdc1d72ffa authored almost 11 years ago by Adrian Thurston <[email protected]>
converted rlhc to an identity transformation in colm

github.com/BioJulia/ragel - a420681442008e9146fd938a2e3c8d20b8bd12d1 authored almost 11 years ago by Adrian Thurston <[email protected]>
added call to rlhc as final step to compilation

Going to experiment with a final compilation step that transforms generated
code into the target...

github.com/BioJulia/ragel - c0fc0c0589f85dadd8ade9348baee1cbe71c27bc authored almost 11 years ago by Adrian Thurston <[email protected]>
main: pushed output close into process* funcs

github.com/BioJulia/ragel - 80abace1932ed0275f9f531da2714c83821fd832 authored almost 11 years ago by Adrian Thurston <[email protected]>
split test translator into C and Go versions

github.com/BioJulia/ragel - b2538f4a3ef3b41adccf39009d76c6bac3a1c6de authored almost 11 years ago by Adrian Thurston <[email protected]>
skip over languages not currently supported

github.com/BioJulia/ragel - 57c991cf96c5924d2d37ac2a45ae67f7eb10529d authored almost 11 years ago by Adrian Thurston <[email protected]>
added ragel_start back, used by test case transformation

github.com/BioJulia/ragel - bc379b4337bc1ba608d496d0c01326b1443fe343 authored almost 11 years ago by Adrian Thurston <[email protected]>
some cleanup of ragel.h

github.com/BioJulia/ragel - 0f2c6886ef9d1dba6facaf78f25556827d68740c authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated machineSpec and machineName globals

github.com/BioJulia/ragel - c6c8ba6779b9c2f6352a3ed8cac01c5bc6992a17 authored almost 11 years ago by Adrian Thurston <[email protected]>
moved six static vars to InputData

CodeStyle codeStyle;
MinimizeLevel minimizeLevel;
MinimizeOpt minimizeOpt;
bool generateXML;
boo...

github.com/BioJulia/ragel - da0b7c90efe6ec17536fb4aea2639f810448f26d authored almost 11 years ago by Adrian Thurston <[email protected]>
moved hostLang into InputData

github.com/BioJulia/ragel - 1a8686d2256c3cfd98150d8bce8d90e8e1854947 authored almost 11 years ago by Adrian Thurston <[email protected]>
moved maxTransitions and numSplitPartitions into main

github.com/BioJulia/ragel - eca325d009ec58b57401f714ea12ad71320d10fb authored almost 11 years ago by Adrian Thurston <[email protected]>
moved displayPrintables and rubyImpl into InputData

github.com/BioJulia/ragel - af76d3e6d3871d31fcf554b27bb1a0bec298138d authored almost 11 years ago by Adrian Thurston <[email protected]>
noLineDirectives global moved into InputData

github.com/BioJulia/ragel - 8d52709f8867399b737c7cb94e40a6d0373524c6 authored almost 11 years ago by Adrian Thurston <[email protected]>
moved wantDupsRemoved into InputData

github.com/BioJulia/ragel - e6b51467cf911e453fce4e647c5349339bd654d3 authored almost 11 years ago by Adrian Thurston <[email protected]>
now referencing colm binary with COLM_FULL

github.com/BioJulia/ragel - ce3af338a122ea1ef93bf32494103950927e9c13 authored almost 11 years ago by Adrian Thurston <[email protected]>
removed old test for colm

github.com/BioJulia/ragel - 9cda40b591ead02a30caa6c374e668841636c6f6 authored almost 11 years ago by Adrian Thurston <[email protected]>
using default names for repeat type refs

github.com/BioJulia/ragel - 0ec33e1c02a53a052eb255f247475c803ac96d89 authored almost 11 years ago by Adrian Thurston <[email protected]>
added version.h to BUILT_SOURCES

github.com/BioJulia/ragel - 7573e982dc06ff924734ba53aaf024f0bc19b066 authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated minimize level and minimize opt globals

github.com/BioJulia/ragel - 5c5a1a88eb0f0ad8946035221a601383fbbc4a3c authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated the hostLang global

github.com/BioJulia/ragel - 357d0e3fb384f2c59a91bdc77c0aa0ddb31ff274 authored almost 11 years ago by Adrian Thurston <[email protected]>
updated trans.lm for default prod el labels

github.com/BioJulia/ragel - deda7088064bd86a3f4379450bdd5a7bcaa39112 authored almost 11 years ago by Adrian Thurston <[email protected]>
made the HostLang structs constant, moved pointer to main

Looking to eliminate the hostLang pointer. Going to pass it down from main.

github.com/BioJulia/ragel - 740abd6769f9a549069261ed3ee0dd5062b26c0f authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated the printStatistics global

github.com/BioJulia/ragel - 4eaed969d4e3c93174301eaa6bea3053abcd9f1e authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated the generateXML and generateDot globals

github.com/BioJulia/ragel - 18c6bfd345e3d303597cdfa0bb5afc0e21feee41 authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated the CodeStyle global

github.com/BioJulia/ragel - b212a087b745d0e3199a647dac342776ef34bb91 authored almost 11 years ago by Adrian Thurston <[email protected]>
don't need InputData in CodeGenArgs

github.com/BioJulia/ragel - 75e10e60e05309efd4a9609165ad203a5d1d27aa authored almost 11 years ago by Adrian Thurston <[email protected]>
some dead code removal

github.com/BioJulia/ragel - 3537d419d3e9963883b716b3efa47b7b17c23875 authored almost 11 years ago by Adrian Thurston <[email protected]>
using default production el names in the load

github.com/BioJulia/ragel - 17ea3562df2f544db24ddbb743231cac398f08f3 authored almost 11 years ago by Adrian Thurston <[email protected]>
added --with-colm option

github.com/BioJulia/ragel - 1795a3b6845419331ca73d406a3ea98cfe9f3676 authored about 11 years ago by Adrian Thurston <[email protected]>
some cleanup of the machine name and include logic

github.com/BioJulia/ragel - 7bf7f591075bbf11c6b455da0f4c8db0b61b4f37 authored about 11 years ago by Adrian Thurston <[email protected]>
removed debug print statement

github.com/BioJulia/ragel - cde6b1ccd1bc8c13f4b593131eea58aacd30ffb2 authored about 11 years ago by Adrian Thurston <[email protected]>
remainder of lang-indep test cases now working

github.com/BioJulia/ragel - 5e53d544670a36f3ebb70ab1b3f9206a0a235c81 authored about 11 years ago by Adrian Thurston <[email protected]>
cond1, cond7 and cppscan6 now working

github.com/BioJulia/ragel - afac2c2d51c2fa31e23bbfc02b304a107f96647d authored about 11 years ago by Adrian Thurston <[email protected]>
added support for ptr, print_token, first_token_char

github.com/BioJulia/ragel - 2d12b5e947921e121c39725a4690eb644e4b94d6 authored about 11 years ago by Adrian Thurston <[email protected]>
atoi2 and clang4 now passing

github.com/BioJulia/ragel - 5ac46eed8a9326f282713a8b004626ce35b59b3e authored about 11 years ago by Adrian Thurston <[email protected]>
trans: added arrays, init code and printb

github.com/BioJulia/ragel - 8631dad1c20dfe172251adbcd65799e7f34815bc authored about 11 years ago by Adrian Thurston <[email protected]>
use ifdef syntax for input in lang-independent tests

github.com/BioJulia/ragel - 61723da11360b3267763f2a287b5166ddacc7f43 authored about 11 years ago by Adrian Thurston <[email protected]>
parse values in the comments and read/use @NEEDS_EOF

github.com/BioJulia/ragel - e5ed9eb1c0a9cc9cb44fb51947db59f55f19c4af authored about 11 years ago by Adrian Thurston <[email protected]>
use the #ifdef syntax for OUTPUT in lang-indep tests

This now matches the runtest syntax for output. The ifdef syntax was
inconvenient with the TXL l...

github.com/BioJulia/ragel - c229f6341b13511a0029fe087f36f205695f1baa authored about 11 years ago by Adrian Thurston <[email protected]>
find the machine name test case translate and use for first_final ref

github.com/BioJulia/ragel - 4167b907f66cb75f390503c46587fcdfbde30f2a authored about 11 years ago by Adrian Thurston <[email protected]>
eliminated the indep_host namespace

github.com/BioJulia/ragel - 0eb94adaab3998b9876d0cebb781b679aa672b87 authored about 11 years ago by Adrian Thurston <[email protected]>
translate enough of the lang-indep code to make atoi1.rl work

github.com/BioJulia/ragel - 58fe81aeaa750eff370d058acef44de6f7afc32c authored about 11 years ago by Adrian Thurston <[email protected]>
building up the test translator for C

github.com/BioJulia/ragel - 74b78327fc92343101ded8c491b308aed8829105 authored about 11 years ago by Adrian Thurston <[email protected]>
use the full path to COLM found at configure time

github.com/BioJulia/ragel - c5fcca70f411c6f132db23f67dfeb48404e2f482 authored about 11 years ago by Adrian Thurston <[email protected]>
removed the check for TXL

github.com/BioJulia/ragel - cb4a53da71cdf50fbdae45e456e0e42fea00900c authored about 11 years ago by Adrian Thurston <[email protected]>
subst the full path to colm

github.com/BioJulia/ragel - e94f5dc1ddf3008d6a518930c2c6c3f091ef31e6 authored about 11 years ago by Adrian Thurston <[email protected]>
only generate C code for lang indep tests, don't require txl

github.com/BioJulia/ragel - b01206b69e7d1c0ccee04bcef8b0e6c9b4781d4f authored about 11 years ago by Adrian Thurston <[email protected]>
load the inline block for prepush and postpop

github.com/BioJulia/ragel - d6e80feb351e519d838fb7cd1a3ad4b7a46140ed authored about 11 years ago by Adrian Thurston <[email protected]>
some hacks to include to make it work

github.com/BioJulia/ragel - ca5829f7cbfec97ab45e1b90eea089db571030b8 authored about 11 years ago by Adrian Thurston <[email protected]>
save pd to stack and restore through a commit

github.com/BioJulia/ragel - 20159c5d3ad268070d57b98521a62e265fae36b8 authored about 11 years ago by Adrian Thurston <[email protected]>
extract import from host code and load them

github.com/BioJulia/ragel - c42426cad771e74f59b023bb1c5d99f6444ee88f authored about 11 years ago by Adrian Thurston <[email protected]>
load exported assignment instantiation statements

github.com/BioJulia/ragel - 9b037e5ddfd1b811f9c55ff698ee8e76352d05d9 authored about 11 years ago by Adrian Thurston <[email protected]>
removed debug write to cerr

github.com/BioJulia/ragel - 36612fc215f596b765679711ed314ef769fcc0a8 authored about 11 years ago by Adrian Thurston <[email protected]>
unescape regex char items

github.com/BioJulia/ragel - 9fb721082512b414cf731d9f3b4062b30f6f6954 authored about 11 years ago by Adrian Thurston <[email protected]>
load scanners

github.com/BioJulia/ragel - b79c15c5d2b2d671a97e10dab327495621f55357 authored about 11 years ago by Adrian Thurston <[email protected]>
load state actions (to, from, eof, err, lerr)

github.com/BioJulia/ragel - 22d1b2ba5a75e13aab88a68db092157ac9072613 authored about 11 years ago by Adrian Thurston <[email protected]>
load condition embedding

github.com/BioJulia/ragel - dea3d90d2e86b73e65adbd3c7b2d653b519716c6 authored about 11 years ago by Adrian Thurston <[email protected]>
an implementation of includes, needs work

github.com/BioJulia/ragel - 8be9cf3355925e0aace8ca664091395129e0d39a authored about 11 years ago by Adrian Thurston <[email protected]>