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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

altered the syntax of unsigned num (do not reply on passthrough)

github.com/BioJulia/ragel - bc3996892d9cb988e07f587c041d50fabe9756e2 authored over 10 years ago by Adrian Thurston <[email protected]>
add Gitter room to README

github.com/BioJulia/Bio.jl - 384994f630376eb9f7afc8ebc9198702be881946 authored over 10 years ago by Richard Smith-Unna <[email protected]>
csharp: fixed copy-paste error

github.com/BioJulia/ragel - d2dbe2da5cd755d95134b437b7d4df8d3c2ef7c0 authored over 10 years ago by Adrian Thurston <[email protected]>
csharp: implemented character array formating, first test passes

github.com/BioJulia/ragel - abb4a67da1cf99734f2a6fd94ae6519abe881ede authored over 10 years ago by Adrian Thurston <[email protected]>
start of c# code generator

not functional yet -- requires char value translator

github.com/BioJulia/ragel - b473a1ac0703d5ebf4dac2d6349e474775f25c1f authored over 10 years ago by Adrian Thurston <[email protected]>
don't build the ragel-parse executable

github.com/BioJulia/ragel - 4bdb8e29eaf31ab8b7fac6a598c4b9adfda5620f authored over 10 years ago by Adrian Thurston <[email protected]>
expect colm 0.12 in the configure check

github.com/BioJulia/ragel - 7bf6d29a7417650f8ee6939de613312076728f5e authored over 10 years ago by Adrian Thurston <[email protected]>
Merge pull request #1 from kmsquire/autogenerate_structure

Added Autogenerated structure files

github.com/BioJulia/Bio.jl - ba5a00a021787b6677e69a48f4370fea894ceb01 authored over 10 years ago by Richard Smith <[email protected]>
Added Autogenerated structure files

github.com/BioJulia/Bio.jl - c348c6108d41f35aa450a62e9137cc186efbe2a6 authored over 10 years ago by Kevin Squire <[email protected]>
Update README.md

github.com/BioJulia/Bio.jl - 89188f8d3d2d84f327f097d3c979ce91dd3e21f8 authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

github.com/BioJulia/Bio.jl - 9a2c4a0310ba9710629144d780115f4d4bae042e authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

github.com/BioJulia/Bio.jl - 6455872ff2f255c68cfb188896ef8fe175a3e81c authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

github.com/BioJulia/Bio.jl - 4aca7de7ca2f4f09291e27d2b5eb34fafc8c8608 authored over 10 years ago by Richard Smith <[email protected]>
Update README.md

github.com/BioJulia/Bio.jl - c87f13be76820f307447a2005a2683905ee2d873 authored over 10 years ago by Richard Smith <[email protected]>
Initial commit

github.com/BioJulia/Bio.jl - 3193967d91dfdfa723793ee978f43895b10e132b authored over 10 years ago by Richard Smith <[email protected]>
updated syntax to colm 0.12

github.com/BioJulia/ragel - 8b4d0ca8d615b8c94e895fb1f23c7c5e48796f60 authored over 10 years ago by Adrian Thurston <[email protected]>
README: fix travis build status link

github.com/BioJulia/FactCheck.jl - c7f6b6391146288a7e783098409316f51405e4f1 authored almost 11 years ago by Zachary Allaun <[email protected]>
Merge #16 - Hook up FactCheck to Travis

Conflicts:
README.md

github.com/BioJulia/FactCheck.jl - a34de37407cd4625fd44c7cdfed7aa530cc00738 authored almost 11 years ago by Zachary Allaun <[email protected]>
Travis: use my email address and repo

github.com/BioJulia/FactCheck.jl - 1440b842acf99d251da27b265b83bc5b435b6688 authored almost 11 years ago by Zachary Allaun <[email protected]>
README: line breaks after every sentence

http://xkcd.com/1285/

github.com/BioJulia/FactCheck.jl - e171c03a8a2dc8dca8ec75c0bdd7a25d1e61f00e authored almost 11 years ago by Zachary Allaun <[email protected]>
exitWithTestStatus -> exitstatus

github.com/BioJulia/FactCheck.jl - 0a4602e59bbacdee1f3ff65e44336d1ac51d3124 authored almost 11 years ago by Rene Donner <[email protected]>
fixed typo

github.com/BioJulia/FactCheck.jl - d6608ff38ffa8248b2931bb9660b91e6ea81bbad authored almost 11 years ago by Rene Donner <[email protected]>
added exitWithTestStatus()

just a nice-looking shortcut to exit(getStats()["nNonSuccessful"])

github.com/BioJulia/FactCheck.jl - bef728e0ce1f544417451db12a5ce41fb070e6a5 authored almost 11 years ago by Rene Donner <[email protected]>
Added readme section on Travis

github.com/BioJulia/FactCheck.jl - ec01e45375f1b1ba14d7a8065b5e1224f6ee334a authored almost 11 years ago by René Donner <[email protected]>
Make travis pass again - travis seems to work

github.com/BioJulia/FactCheck.jl - 767197c3b3c9a97a393b0cdc49f41b6a63da45f2 authored almost 11 years ago by René Donner <[email protected]>
Make 1 test fail to test travis build

github.com/BioJulia/FactCheck.jl - 38b4027387f3fb5012520339fd34453c28ca70c4 authored almost 11 years ago by René Donner <[email protected]>
updated README to include documentation of runtest macro

github.com/BioJulia/FactCheck.jl - db079ce068718927899d7fdec0084942d1470d61 authored almost 11 years ago by milktrader <[email protected]>
Cleanup

also triggers travis

github.com/BioJulia/FactCheck.jl - 2ea5bef876803cc853972324beafc835db301d78 authored almost 11 years ago by René Donner <[email protected]>
Set up travis and add travis build status to Readme

This shows how to use FactCheck.jl with travis

github.com/BioJulia/FactCheck.jl - cda3320fd6c3f9f0471e90be39e324290bf69daa authored almost 11 years ago by René Donner <[email protected]>
Add getStats()

getStats() allows at any point to retrieve a Dict with the numbers of
successes, failures, error...

github.com/BioJulia/FactCheck.jl - d3259df61fd976ec0ca578b433a69000eb550866 authored almost 11 years ago by René Donner <[email protected]>
added runtest macro

github.com/BioJulia/FactCheck.jl - 07051a225133a87387cbd143acfd4a8127d6fcd1 authored almost 11 years ago by milktrader <[email protected]>
moved the language-independent grammar into a namespace

This prevents the grammars from the language-specific test cases from
accedentally referencing t...

github.com/BioJulia/ragel - 5208ab32e15888609fb8674e673243dd5bf187b1 authored almost 11 years ago by Adrian Thurston <[email protected]>
trans: rewrite a ref of any

github.com/BioJulia/ragel - 70183123ccdf068edda3681cebb551af58152335 authored almost 11 years ago by Adrian Thurston <[email protected]>
trans: separated factors, expressions and statements in the grammars

github.com/BioJulia/ragel - 9e7fdbc249d08e072a58460e22f72421c409ef0f authored almost 11 years ago by Adrian Thurston <[email protected]>
trans: more separation of the common and target grammars

github.com/BioJulia/ragel - 07754f5523cbff732471c4e145627d8b11205b04 authored almost 11 years ago by Adrian Thurston <[email protected]>
trans: some code cleanup using a function to cast to target lang

github.com/BioJulia/ragel - fe6fda961606b5bbfe1749254870e4be7331dfdf authored almost 11 years ago by Adrian Thurston <[email protected]>
trans: removed the go var decl from common trans grammar

github.com/BioJulia/ragel - 11051ae64f51e447332d476185efaae80efc5e21 authored almost 11 years ago by Adrian Thurston <[email protected]>
code gen style improvements

github.com/BioJulia/ragel - f35b24582bf980cbbdf9c151feb737b7acb7e1fc authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: style improvements

github.com/BioJulia/ragel - 5c8e6ced91588e9b40eed2e83d3497261ab1910f authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: some style improvements

github.com/BioJulia/ragel - c097c6bfa67cb28105fbc7c7de18253f2bd51ad1 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: use void as return types

github.com/BioJulia/ragel - 4e03b45300da064e0af4869ba5953453b1ae8f2a authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: shorted identifier names

github.com/BioJulia/ragel - f347de33696da546ed85930c0c65dc04925a13ce authored almost 11 years ago by Adrian Thurston <[email protected]>
Use newer import syntax.

github.com/BioJulia/Codecs.jl - acc304ddb9c2d601ade091fb16b80a05fbfb8381 authored almost 11 years ago by Daniel Jones <[email protected]>
using the cast feature in colm to translate lang-indep test code

github.com/BioJulia/ragel - 38a8bcc55bf166a92f80fffea2ce4d99d934a689 authored almost 11 years ago by Adrian Thurston <[email protected]>
added go to the list of languages for lang-indep tests

github.com/BioJulia/ragel - 0895375b9a59c13986fd3dc5a7af5a3c267269fa authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: use a global for the output var

github.com/BioJulia/ragel - cb17675c623c82ef557b1d54bdab6ad2d9548860 authored almost 11 years ago by Adrian Thurston <[email protected]>
final fix for go: need a fallthrough in the finish cases

github.com/BioJulia/ragel - a78c9cfa4c802b8e2f03b11d1cf43ddb1def6414 authored almost 11 years ago by Adrian Thurston <[email protected]>
removed extra default: break;

github.com/BioJulia/ragel - 8b39ab131a03b93b5bc6c2e65b68392bd55bafef authored almost 11 years ago by Adrian Thurston <[email protected]>
various fixes for go code generation

github.com/BioJulia/ragel - 8754170fdac63da123edc059dd4fc1825c336a96 authored almost 11 years ago by Adrian Thurston <[email protected]>
distinguish between host expression and statements

github.com/BioJulia/ragel - 452919a6766a827a547550cc333fdad0946345b2 authored almost 11 years ago by Adrian Thurston <[email protected]>
codegen: various whitespace fixes for go

github.com/BioJulia/ragel - 998bcb41c161ba574e38f9542c92bfe9fad2f71a authored almost 11 years ago by Adrian Thurston <[email protected]>
test case translator for go, works with -T0

github.com/BioJulia/ragel - ff23d437a3a3bc77b33e995112a00f0af2a1d4ac authored almost 11 years ago by Adrian Thurston <[email protected]>
codegen: some fixes for go not exercised by first test

github.com/BioJulia/ragel - 1cc1a97b48943bb9565efa0cfc7ea294145226ab authored almost 11 years ago by Adrian Thurston <[email protected]>
functional test case translator for D

github.com/BioJulia/ragel - 49b06ead7851ab33cc434c5c03dd01bc269fdb27 authored almost 11 years ago by Adrian Thurston <[email protected]>
use uint instead of unsigned int as a type in the intermediate lang

github.com/BioJulia/ragel - 13349e6d6788260b56360cc530dfd814aa10558e authored almost 11 years ago by Adrian Thurston <[email protected]>
removed the ? : expression from the intermediate lang grammar

No longer generating this.

github.com/BioJulia/ragel - 2f4726b38ac9ed2a5c1eec94e0ca5b2a5400bafc authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated interleaved switch/goto from intermediate ipgoto

Not supported in Go. Can be added back to the code generators for the languages
that do support it.

github.com/BioJulia/ragel - 8f929f06a8ce415739aaa24691f047c681dc6555 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: eliminated ++ from expressions

github.com/BioJulia/ragel - 4ccb4d6dddf4829b62ee37b60e96adad27852e15 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: some whitespace fixes

github.com/BioJulia/ragel - 1a0fe28b72c86a4e80e0e839b7d95a31a05adea3 authored almost 11 years ago by Adrian Thurston <[email protected]>
goto codegen: some fixes for go compatibility

github.com/BioJulia/ragel - 859c353240c18965ff9443bbebb4c333bee17082 authored almost 11 years ago by Adrian Thurston <[email protected]>
various fixes to the flat codegen for go lang

github.com/BioJulia/ragel - b1df223481a742fd62b271f83a7a21f2dbe12e55 authored almost 11 years ago by Adrian Thurston <[email protected]>
added some missing casts for the binary search codegen

github.com/BioJulia/ragel - efe2756d9f7e1b7ac90f1dabc54ac45bfb669ccd authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminated use of ? : expression from flat code generator

github.com/BioJulia/ragel - 5de52787a18da722823d86c0658f14aa77c6b69e authored almost 11 years ago by Adrian Thurston <[email protected]>
fixed a couple calls to go codegen from c and d

Copy-paste error.

github.com/BioJulia/ragel - 10e8ee29ad05825f30606e818cf0d77e007a8cf4 authored almost 11 years ago by Adrian Thurston <[email protected]>
added embedded generated-code wrappers around fc output

github.com/BioJulia/ragel - 12ac02aef62ceb2021604fb707c57cdb9a42656d authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added a form for dereferencing and index

In languages with pointers this is the * operator. Otherwise it's array
subscript.

Can now comp...

github.com/BioJulia/ragel - 4b59cfa30006f413a72ee5a53ba5dc53fc8e2863 authored almost 11 years ago by Adrian Thurston <[email protected]>
go lang: added some index decls and casts

github.com/BioJulia/ragel - 42d9502505341f9787b55e0e06c917cc145da471 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: force offsets to type int

github.com/BioJulia/ragel - a23098543d0ed6897bf92cee8b2b6212c1484910 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: translate to go types

github.com/BioJulia/ragel - 8d1c02f402fcc89cd610db136619f8eb9977fe06 authored almost 11 years ago by Adrian Thurston <[email protected]>
newlines after actions

github.com/BioJulia/ragel - 574b77676052fd80c5a25442beff5fb7c6dc59fc authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: use for kw instead of while

github.com/BioJulia/ragel - 7982236174b2c1e6dfd9b0841a2bea9ae80f06e6 authored almost 11 years ago by Adrian Thurston <[email protected]>
eliminating ++ and -- from expressions, just using as stmts

github.com/BioJulia/ragel - 6c88a82d29d006697ef122d920b8b538bfb9766f authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: eliminating some use of ++ from expressions

increment in expressions is not a general language feature

github.com/BioJulia/ragel - 9a8cb1e799c5b940519b8ddb4d9bd9792a12c872 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: switch statements

github.com/BioJulia/ragel - 349d65787591f3c39aef223ac746dd9820ded267 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: generate proper casts in go

github.com/BioJulia/ragel - 0f3275f1dc397268b8bdf3777748459997ff1aaf authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: bitwise complement is ^ in go

github.com/BioJulia/ragel - f89f70f1f3d17e219378bc5c28f13cfa2e34a4f4 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc: added syntax form for goto statements

They were being parsed as variable declaraions.

github.com/BioJulia/ragel - c11cd4ba0dcf453fcdecea1a34547e68b83810b1 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: use go form for index declarations

github.com/BioJulia/ragel - bea829ade2c22c28236ddfdde66430c94b316f99 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: use go form for declarations

github.com/BioJulia/ragel - c7d66d170e0ec102c84356d0768f3855f802bb0f authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: if and while statements

If statements with more than just an if-clause need to become switch
statements. While ( true ) ...

github.com/BioJulia/ragel - 5ae5418308000e797417bfbca371ecc6b12e63f7 authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: unsigned int is 'uint'

github.com/BioJulia/ragel - 72e9d194102e65e9fe161bcde8b86b4c63082a8a authored almost 11 years ago by Adrian Thurston <[email protected]>
go codegen: true is 'true'

github.com/BioJulia/ragel - 4fb81127039b59095d5a3b03743ffea6ec023345 authored almost 11 years ago by Adrian Thurston <[email protected]>
refactored the grammar for less translation code

github.com/BioJulia/ragel - 6d2f9a23a082a4d9060c6b98a8d815c8ec9b4198 authored almost 11 years ago by Adrian Thurston <[email protected]>
added index statement for declaring an offset into an array

The index statement is for declaring and offset into an array. In languages
with pointers and po...

github.com/BioJulia/ragel - f9b635d980bd8fe63c80b69f5603126dbf56b607 authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc-go: go syntax for value statement

github.com/BioJulia/ragel - f4a4b1de6942708a2cc1a3ab02da7895eb1e081f authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc-go: remove trailing 'u' for unsigned literal numbers

github.com/BioJulia/ragel - 9b5e28b4c17df9073eae86c698aac64a6fab900f authored almost 11 years ago by Adrian Thurston <[email protected]>
rlhc-go: array syntax

github.com/BioJulia/ragel - 4a08d5438b70c695f9640a05448b0ca1214aec44 authored almost 11 years ago by Adrian Thurston <[email protected]>
forked C code generator for Go

github.com/BioJulia/ragel - 4b3e730e29dd6a9a9247efdbedec85715a6c72b6 authored almost 11 years ago by Adrian Thurston <[email protected]>
README: Adds section on recommended workflow (closes #14)

github.com/BioJulia/FactCheck.jl - 516a6d914a0d21215a91f982cc151468d2c274db authored almost 11 years ago by Zachary Allaun <[email protected]>
README: Bold TOC

github.com/BioJulia/FactCheck.jl - fb9eefef2db78d409199e5442d1ae060462c6a38 authored almost 11 years ago by Zachary Allaun <[email protected]>
README: Fix TOC

github.com/BioJulia/FactCheck.jl - c3e259a2bebf9e22c16c93905c01720caf937cff authored almost 11 years ago by Zachary Allaun <[email protected]>
README: Adds TOC and line breaks after sentences.

github.com/BioJulia/FactCheck.jl - a1802efb3cd7aa9b060dc6801124ba66dbcfd890 authored almost 11 years ago by Zachary Allaun <[email protected]>
Merge pull request #13 from milktrader/master

fix README example s/begin/do in first context example

github.com/BioJulia/FactCheck.jl - e439f87075fe857ab770444648eb300b91da491c authored almost 11 years ago by Zach Allaun <[email protected]>
fix README example s/begin/do in first context example

github.com/BioJulia/FactCheck.jl - b53f2c411e308a89d41512a46e2c0a2dac2a3a15 authored almost 11 years ago by milktrader <[email protected]>
Merge pull request #12 from milktrader/master

update README to omit instructions to add to REQUIRE file since Pkg.add ...

github.com/BioJulia/FactCheck.jl - c4f090132488455dbf2b8ae65e8b6ca4791dad08 authored almost 11 years ago by Zach Allaun <[email protected]>
update README to omit instructions to add to REQUIRE file since Pkg.add does this automatically

github.com/BioJulia/FactCheck.jl - 2e2a7f267bcf27b9032288d6b49e4a90c145f02d authored almost 11 years ago by milktrader <[email protected]>
use AS_IF and test to check if the DIST file is present

AC_CHECK_FILE doesn't work when cross compiling

github.com/BioJulia/ragel - e6a5c3df3c8786b52ac82879ae653671d5daa6db authored almost 11 years ago by Jungshik Shin <[email protected]>
use the send construct for writing output

github.com/BioJulia/ragel - 61812f81621278be8be1c3a7dfad0a144f352a59 authored almost 11 years ago by Adrian Thurston <[email protected]>
test case for cond+error action bug in ragel 6

github.com/BioJulia/ragel - 848e66e3732d8c28d6e78de51bb15da52a3af886 authored almost 11 years ago by Daniel Salzman <[email protected]>
added input to ignore list

github.com/BioJulia/ragel - 962a3f967551de1aa4aeb9a6f8f08ecdab44d77b authored almost 11 years ago by Adrian Thurston <[email protected]>