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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Update contributing link in docs

github.com/BioJulia/BioStructures.jl - 9d6bcb0c6bab0de2840e03d856eeb49a1da2818b authored over 6 years ago by Joe Greener <[email protected]>
Merge pull request #9 from mcmcgrath13/master

Added retry_non_idempotent=true to HTTP post requests for UMLS

github.com/BioJulia/BioServices.jl - 2677c7acd8b4302f687dcd6c96a347d8c30eaeb3 authored over 6 years ago by Maria Isabel Restrepo <[email protected]>
removed unnecessary retry_non_idempotent on get

github.com/BioJulia/BioServices.jl - 20d7b499bb6989832589bc5c30a2961c35f82c47 authored over 6 years ago by mcmcgrath13 <[email protected]>
adding retry_non_idempotent=true to post requests that are actually gets

github.com/BioJulia/BioServices.jl - f4a0db4b83ca607cbd13c53becd5c7dae5ebec27 authored over 6 years ago by mcmcgrath13 <[email protected]>
Merge pull request #8 from fernandogelin/master

Change functions to use HTTP.jl package instead of deprecated Requests and HttpCommon.

github.com/BioJulia/BioServices.jl - 5066442acaf02cfbec74f8dc746ec4df2b4ab675 authored over 6 years ago by Maria Isabel Restrepo <[email protected]>
incorporated reviewer suggestions

github.com/BioJulia/BioServices.jl - aeb98e270795a6dd20479068ea49322363d35d04 authored over 6 years ago by fgelin <[email protected]>
adds more tests to esearch, espells, einfo, esummary

github.com/BioJulia/BioServices.jl - fa9d9a328edc2cfd46294b62741162dc933de806 authored over 6 years ago by fgelin <[email protected]>
fixes post requests in epost and efetch

github.com/BioJulia/BioServices.jl - f8b615ca2c2aca30a7b614ad0d5b92d6a0af3a3b authored over 6 years ago by fgelin <[email protected]>
:exclamation: removed deprecated http libraries from umls.jl

github.com/BioJulia/BioServices.jl - 9a066147f6dd50bb66c86288bcf6f72b6b437f39 authored over 6 years ago by fgelin <[email protected]>
:exclamation: updates eutils tests

github.com/BioJulia/BioServices.jl - c47139451c6a26bf6dae9e9756c673dc9f90e648 authored over 6 years ago by fgelin <[email protected]>
:exclamation: updated eutils.jl to use HTTP.jl

github.com/BioJulia/BioServices.jl - bd7c18878e3aaedd83efa3630e05fbe40d1d25c6 authored over 6 years ago by fgelin <[email protected]>
Merge remote-tracking branch 'origin/master'

github.com/BioJulia/Contributing - f75a62886601400582373516c3fd77fe72046a84 authored over 6 years ago by Ben J. Ward <[email protected]>
Updates

github.com/BioJulia/Contributing - 5723c446a1ec12dc8f018e87f171bb0bac8d2d76 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#13)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BGZFStreams.jl - 3de0114ddfa33e122dae6c6374f21a850406d2b4 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#11)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioAlignments.jl - 11d47d7aad4d51270dc791d0f0a67f2cbdd00e1d authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#1)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/GenomeGraphs.jl - 58d5e8bad3afccc3398ec20a24471d48f916918e authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#37)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioSequences.jl - 6622f2513f15876f68dd506510777bf40f25aed0 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#5)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioTools.jl - 4112ba5ba1af1bb80bc10104707b14b0632bada3 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#7)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/FMIndexes.jl - 844de5afdd428ea3aa21c2e3b1e08aa1616d310c authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#11)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/GenomicFeatures.jl - 823297b1e0af50711f440f146a0e52340f4e4c22 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#38)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/IntervalTrees.jl - 4cfba59110550752673ce350b8f8b2c8e47e0538 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#60)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/Libz.jl - 7e1e172ef4f8137c188b0cf38a2d9f5f5be62fef authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#5)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/Phylogenies.jl - 51a01a52154c41a8c4d9928d2fdd9902cb2189e1 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#1)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/ReferenceSequences.jl - e05b6fb1a7e073640165b9e179bd369c8d017537 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#2)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/WAHVectors.jl - ebfeb848d2b23a3ae754caa242c24091acc711e4 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#2)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/WaveletMatrices.jl - 04fe236a266b38c2d59efaab7c464c82985a574a authored over 6 years ago by Ben J. Ward <[email protected]>
Fix two broken links

github.com/BioJulia/Contributing - 6431ad8da468ee97da6beaeedbfa587679005816 authored over 6 years ago by Ben J. Ward <[email protected]>
Fix additional-julia-style-suggestions link

github.com/BioJulia/Contributing - bd615fb4c19a6f0e93d6272707a9aa281a594b35 authored over 6 years ago by Ben J. Ward <[email protected]>
Fix typo

github.com/BioJulia/Contributing - 8b11041280df0858773aa84a5085938c40025224 authored over 6 years ago by Ben J. Ward <[email protected]>
Fix typo

github.com/BioJulia/Contributing - da0e110cf492b20876d9962e42ddace741f58fac authored over 6 years ago by Ben J. Ward <[email protected]>
Remove nonexistent table of contents entry

github.com/BioJulia/Contributing - 491f9577d74c5e32cffbcf836a5c029c7d76bfde authored over 6 years ago by Ben J. Ward <[email protected]>
Fix "Making Pull Requests" link

github.com/BioJulia/Contributing - 8c987b29b2520b5bf794c0917d6f29205f81ccd2 authored over 6 years ago by Ben J. Ward <[email protected]>
Create CNAME

github.com/BioJulia/biojulia.github.io - b78bd4bc3a69af375067bf8245eeb49adb61809c authored over 6 years ago by Ben J. Ward <[email protected]>
Delete CNAME

github.com/BioJulia/biojulia.github.io - 64aec02381ee1fae08d5ede079bf9cd043ad0078 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#20)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioSymbols.jl - d51fcd1305c9cc5ce266dca5d33ee1dc553858e9 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#5)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioBridgeR.jl - 1b815c170c69e789cf8335cdb7bd20c1036743cf authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#5)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/NaturalSelection.jl - a60c3e27023c2b7e65e12ce24f6f66948e553930 authored over 6 years ago by Ben J. Ward <[email protected]>
Added specific dependencies section to changelog.

github.com/BioJulia/BioCore.jl - f6e2ad998493334d348b874b7687585d4c7a25ff authored over 6 years ago by Ben J. Ward <[email protected]>
Create CNAME

github.com/BioJulia/biojulia.github.io - 7af6b4fad0793ab95a171eac0461c6a882826a3d authored over 6 years ago by Ben J. Ward <[email protected]>
Delete CNAME

github.com/BioJulia/biojulia.github.io - cb81604e8a85a59b9ac0f2f01406eb244ffaea16 authored over 6 years ago by Ben J. Ward <[email protected]>
Create CNAME

github.com/BioJulia/biojulia.github.io - 3434cab12f4133e4644fbcb743b9b28af25da1ea authored over 6 years ago by Ben J. Ward <[email protected]>
Delete CNAME

github.com/BioJulia/biojulia.github.io - 557fa00e86a77fcbc8ba1185a7b769e868c662ef authored over 6 years ago by Ben J. Ward <[email protected]>
Create CNAME

github.com/BioJulia/biojulia.github.io - 47a347ccb0152f69a9dcc7ad19b6ac42cbc3d6d5 authored over 6 years ago by Ben J. Ward <[email protected]>
Delete CNAME

github.com/BioJulia/biojulia.github.io - 0cc84003dd5f39fdedb602926d89b727a672ef36 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#6)

github.com/BioJulia/BioStructures.jl - 55d8b0fbe9017f890a584aefd34401c4862579ef authored over 6 years ago by Ben J. Ward <[email protected]>
Changelog release edits

github.com/BioJulia/BioCore.jl - 23e7669aa854cd59e7e37ae04526d4a079d0c053 authored over 6 years ago by Ben J. Ward <[email protected]>
Add humans.md file

github.com/BioJulia/BioCore.jl - 86625b0ac65f61962c98c3f354c23ae76c5c7f6c authored over 6 years ago by Ben J. Ward <[email protected]>
Merge pull request #6 from BioJulia/rollout-contributing

Contributing files rollout

github.com/BioJulia/BioServices.jl - f9c918c91b3f4c0272f8af47d5989750ec8a70b3 authored over 6 years ago by Maria Isabel Restrepo <[email protected]>
Manually curated changelog

github.com/BioJulia/BioCore.jl - e516bd7eaf121c23a3869b503ab4d9885daa1615 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#15)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/BioCore.jl - 2298155697e6eb1cc6071788d7d0f71a6030e7c2 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#14)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/GeneticVariation.jl - 2051113f808255d5f707885451425aefcf3f5480 authored over 6 years ago by Ben J. Ward <[email protected]>
Contributing files rollout (#7)

* Rollout file CONTRIBUTING.md

* Rollout file CODE_OF_CONDUCT.md

* Rollout file .github/PU...

github.com/BioJulia/SubstitutionModels.jl - ad2c639cb80604b461b6ae1287bb1eb027dfed33 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/MMTF.jl - ba926eaf05452b3db1e60e04a619203e1058f2d4 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/MMTF.jl - ca56bd26711661eb3b8283ffae94062d2453a26c authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/MMTF.jl - 3a4dda66fff9444923b0a91df9be155018465eb6 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/MMTF.jl - 239a8c406c5e5387057534f73dd5523690668fba authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/IndexableBitVectors.jl - 477e67239aacd38676eb37894e0ba19bef03dbae authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/IndexableBitVectors.jl - 3df1fa73cc300e55bf1216134afd2029802a6a6e authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/IndexableBitVectors.jl - da259c58970b8bcfcd51f6a403d06f759a8da266 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/IndexableBitVectors.jl - c03bbde9fb3378ad6cfa90f281a1a464a5359f1a authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/GenomeBrowsers.jl - b07f3d1b108f8ecbdeec507f54520c94e8881bed authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/GenomeBrowsers.jl - e49bf86ee8af5be14e75d70a6b7821783d03f48b authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/GenomeBrowsers.jl - d5ebe19d9c3f9c4f4c1fefe0f46e5345cd85c58e authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/GenomeBrowsers.jl - 56cb0763afb69d0fb4d4c1cc3d23b05b4f2b4bca authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/BioTutorials - d17c8ae639aff218b8b2841c0f5c985240a8196a authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/BioTutorials - dfe3e7e9b1c60c185f1f4a97ed784cb9ab3568fb authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/BioTutorials - 987eca431c523fcc4a3527299429e5b37ffa8d06 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/BioTutorials - ba237eed64ac632004b88af23d668e12e797eea6 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/BioSymbols.jl - 5153bfa9f38d51a043e65f0b2485e32f8f7fd8ef authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/BioSymbols.jl - 1158860c5cdb0960bb0eaaa66d8a97e2ab818615 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/BioSymbols.jl - eda8f2f82af6a6b1a19ab7d65dd23928ee5a6f2a authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/BioSymbols.jl - 96560de4ecd804d741dd18477d56338b1290f917 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/BioServices.jl - cd424ce03616e5ca64a9d54203ea47b15eeb87f5 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/BioServices.jl - 8b6e07629f54616792d1551311762225689b87cc authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/BioServices.jl - 3b6982bc323f44d7d511528c6ca6c69185b4f673 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/BioServices.jl - b571a532e1d14dd540b7f623109d171eb7ac86bb authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/ISSUE_TEMPLATE.md

github.com/BioJulia/Automa.jl - 351e3ca9a0b137d2bdb368f00ec19b3a38c3f31e authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file .github/PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/Automa.jl - 7fe9090b231ea2dc995559d0ffe437d519f88126 authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CODE_OF_CONDUCT.md

github.com/BioJulia/Automa.jl - f390c00780abebee7b0466fc2b93cd514d697b8c authored over 6 years ago by Ben J. Ward <[email protected]>
Rollout file CONTRIBUTING.md

github.com/BioJulia/Automa.jl - 853b8e8c94410777bd4809aaefff2c363f0a16a8 authored over 6 years ago by Ben J. Ward <[email protected]>
downloadpdb can take a function

github.com/BioJulia/BioStructures.jl - b90a3f2b583166568cc32d59dcdc841779ca7122 authored over 6 years ago by Joe Greener <[email protected]>
Update CHANGELOG.md

github.com/BioJulia/Contributing - 7af38d06105e477b4fd148bc26df6bf5d12dc9ef authored over 6 years ago by Ben J. Ward <[email protected]>
Merge pull request #6 from BioJulia/default-template

A simplified but comprehensive ISSUE_TEMPLATE

github.com/BioJulia/Contributing - 01815bd82a528069977f504902ca3aec0a70f98a authored over 6 years ago by Ben J. Ward <[email protected]>
Clarify status of project in readme (#492)

github.com/BioJulia/Bio.jl - f7eb9d2112b2680ed390ca1c6ccc77c3f80676e3 authored over 6 years ago by Joe Greener <[email protected]>
A simplified but comprehensive ISSUE_TEMPLATE

github.com/BioJulia/Contributing - c24eb8ba429dab2047d9421acbb05900d9def837 authored over 6 years ago by Ben J. Ward <[email protected]>
Remove documenter

github.com/BioJulia/Contributing - 5b669b8febb5239d34922d4a888ecded2b596754 authored over 6 years ago by Ben J. Ward <[email protected]>
Create LICENSE

github.com/BioJulia/Contributing - 9a1834c870d79b9db124e9f1b0496cbb640e1adf authored over 6 years ago by Ben J. Ward <[email protected]>
Update CHANGELOG.md

github.com/BioJulia/Contributing - 4d992e42dcc5c7a532b204af4a55d8e3a7ade19a authored over 6 years ago by Ben J. Ward <[email protected]>
Merge pull request #4 from BioJulia/revamp

Renovation of contribution guidelines & github templates

github.com/BioJulia/Contributing - a6cd8756e3681967bf40d4cc23df8f7097151368 authored over 6 years ago by Ben J. Ward <[email protected]>
:art: Add assureing message to templates @jgreener64

This adds a message to the front of templates assuring the contributor not everything needs to b...

github.com/BioJulia/Contributing - d9e678039d81620aec33f001966aa8614c101d14 authored over 6 years ago by Ben J. Ward <[email protected]>
Fix more of @ScottPJones suggestions

github.com/BioJulia/Contributing - 3c99c185a7bf6137465bf99740f22c63b7a0b833 authored over 6 years ago by Ben J. Ward <[email protected]>
Add fixes suggested by @ScottPJones

github.com/BioJulia/Contributing - b22b06ccfaa1786541fff997464184db6ed760d8 authored over 6 years ago by Ben J. Ward <[email protected]>
Update generated site

github.com/BioJulia/Contributing - c9d915ad465ea973ec1afbf6ad99b97f2b4e3798 authored over 6 years ago by Ben J. Ward <[email protected]>
Add new documentation softlinks

github.com/BioJulia/Contributing - 86a43bcb860b57edd0bd937d8fbf64ce4cabb4fc authored over 6 years ago by Ben J. Ward <[email protected]>
Separate conduct into its own file

github.com/BioJulia/Contributing - 2ee2cd8be0093b61e46be9734561aef8b5ab2aba authored over 6 years ago by Ben J. Ward <[email protected]>
:pencil: Add instruction to branch correctly to PR guidance.

github.com/BioJulia/Contributing - 717c1a4c457f2df1de82c0df0d40c417341afe1e authored over 6 years ago by Ben J. Ward <[email protected]>
:pencil: Add pull request template file and fixup other template styles

github.com/BioJulia/Contributing - f830dc9699b90efe5ae97254b265bb1b02afbf56 authored over 6 years ago by Ben J. Ward <[email protected]>
:art: Bug report and enhancement suggestion template style updates

github.com/BioJulia/Contributing - 958efe1cd16de7c337324db83d5360a82de48acd authored over 6 years ago by Ben J. Ward <[email protected]>
:art: Minor stylistic updates

github.com/BioJulia/Contributing - d6f7fb7b20205048c4c74d1dbf718eb5a8b34775 authored over 6 years ago by Ben J. Ward <[email protected]>
:art: Update pull request guidance style and formatting

github.com/BioJulia/Contributing - ac11c355c7975c457cbc48b9954f08a5c983db1a authored over 6 years ago by Ben J. Ward <[email protected]>