BioJulia commits | Ecosyste.ms: OpenCollective

Merge pull request #24 from BioJulia/mcmcgrath13-master

Fix tests - continue #23

github.com/BioJulia/BioServices.jl - f9297535519deb8ea81f722b445cde3e2f4af838 authored almost 6 years ago by Maria Isabel Restrepo <[email protected]>

add 'retry_non_indempotent=true' to http requests

github.com/BioJulia/BioServices.jl - b9600ce859c60d7a7d6c948daa8945e320395f63 authored almost 6 years ago by Isabel Restrepo <[email protected]>

Merge pull request #1 from mcmcgrath13/test_fix

Test fix

github.com/BioJulia/BioServices.jl - a98792ffda99f75eee3c221a28a9817114e88d2c authored almost 6 years ago by Mary McGrath <[email protected]>

added sleeps, project.toml, fixed post with workaround

github.com/BioJulia/BioServices.jl - d4597240bfe43e19edab238f473b4f351b236589 authored almost 6 years ago by mcmcgrath13 <[email protected]>

Correct travis config

github.com/BioJulia/Bio.jl - 120ebeb4b3c5f88a6db0c9f757b691002adc13b9 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add Pkg to test deps

github.com/BioJulia/Bio.jl - 2c0b03d07d07548f2b8f712bbfd690cb4ff4afbd authored almost 6 years ago by Ben J. Ward <[email protected]>

Add BioTools

github.com/BioJulia/Bio.jl - cc60f9472d6e9d1be81bb4db49bd997659571dbe authored almost 6 years ago by Ben J. Ward <[email protected]>

Add Project file

github.com/BioJulia/Bio.jl - f7e9616edefc768f531280e5d5a8486ceba1304d authored almost 6 years ago by Ben J. Ward <[email protected]>

:bug: Update covert(BAM.Record, x::Vector{UInt8}) (#23)

Implement proposed solution in issue #22
Added test for the fixed function
Changed the format ...

github.com/BioJulia/BioAlignments.jl - d6650300cd24848313b227a644740876ac92b112 authored almost 6 years ago by Jakob Nybo Nissen <[email protected]>

Minor edit to changelog

github.com/BioJulia/BioTools.jl - 7cb7789b861b4f803dde286d0989c0739e9b268e authored almost 6 years ago by Ben J. Ward <[email protected]>

1.0.0 is out (#8)

Thanks for doing this!

github.com/BioJulia/BioTools.jl - 284f7ec994166d97db360fdf7630c1e476f1a28c authored almost 6 years ago by Páll Haraldsson <[email protected]>

Add sticker

github.com/BioJulia/BioTools.jl - 83217a09072be515f53cea971a836031c369b6c0 authored almost 6 years ago by Ben J. Ward <[email protected]>

Remove reference part of site, all methods are documented in manual already

github.com/BioJulia/FASTX.jl - 8aefc15379ab4ffffb9676ecc0ffcac7e9ea2dad authored almost 6 years ago by Ben J. Ward <[email protected]>

Add Humans file

github.com/BioJulia/BioTools.jl - aeeb5d5b4bd7f37edcb6f13855923272ba73125d authored almost 6 years ago by Ben J. Ward <[email protected]>

Update the indes page of the gh-pages site

github.com/BioJulia/FASTX.jl - 0e3826af98404dc719666680c6a919920de035f8 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add coverage folder and script

github.com/BioJulia/FASTX.jl - cc2c1a000ac4b6202fb0005cf490d5315ed3609e authored almost 6 years ago by Ben J. Ward <[email protected]>

Add example reads

github.com/BioJulia/FASTX.jl - 31a27b424eef1f85b81db7c498206aa32e66daae authored almost 6 years ago by Ben J. Ward <[email protected]>

Use subprojects for docs building, and coverage reporting

github.com/BioJulia/BioTools.jl - f60e510844091758e8cbb75f4169fce744afcd83 authored almost 6 years ago by Ben J. Ward <[email protected]>

Fix doc generation

github.com/BioJulia/BioTools.jl - df1e515cbc35343d8a21ac171d5f124cd8433b78 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update docs and remove changelog generator

github.com/BioJulia/BioTools.jl - 438dbe6ee80787f5aefd56bf2a45c558f6c50928 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update readme, project, and changelog files

github.com/BioJulia/BioTools.jl - e36254eab44770a1440a224f41b7fa02777fdbee authored almost 6 years ago by Ben J. Ward <[email protected]>

Fix fastq docs

github.com/BioJulia/FASTX.jl - 05feaab238b8e42a8e13b8ffb2c77481fda0406f authored almost 6 years ago by Ben J. Ward <[email protected]>

Update docs index.md

github.com/BioJulia/FASTX.jl - 9bce61d1848029f4425df1fac4a4195a12ead206 authored almost 6 years ago by Ben J. Ward <[email protected]>

Fix docs again

github.com/BioJulia/FASTX.jl - aed3a552c400b95b7e46f709de8130cf25607338 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add deploydocs

github.com/BioJulia/FASTX.jl - ef419501af03ffead93a25eb7ecc437085e5faf7 authored almost 6 years ago by Ben J. Ward <[email protected]>

Edit docs

github.com/BioJulia/FASTX.jl - d439c5bab838a2bac889c79f565eb494ba30313b authored almost 6 years ago by Ben J. Ward <[email protected]>

Fix reference documentation

github.com/BioJulia/FASTX.jl - 52f6c30aaf2534a540f3bb56d2347e9f4ef43e06 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update documentation generation

github.com/BioJulia/FASTX.jl - 7f70f9317a82ffad1fdeb6c1c5332617a3cbbc66 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update documentation generation

github.com/BioJulia/FASTX.jl - c84a05884f8efea6ad950e5ce786a4a4013a8d1c authored almost 6 years ago by Ben J. Ward <[email protected]>

Fix doumentation generation

github.com/BioJulia/FASTX.jl - 87a9f0e2a788713f053a20297e5cab763b1873cc authored almost 6 years ago by Ben J. Ward <[email protected]>

Update doc generation

github.com/BioJulia/FASTX.jl - d53cef4c005aa23ee316aef901f0048faf496e65 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update Project.toml

github.com/BioJulia/FASTX.jl - e31215540da20e778d0424ffbe3e7f3fd23d91e5 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add project file

github.com/BioJulia/FASTX.jl - 67f5ff1b6dedc27a62f98de67369cff2f4393243 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add documentation files

github.com/BioJulia/FASTX.jl - 230fbb7cf7a2f96ad20eaeb2730d5ad6cc7ed634 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add source code and tests

Add travis

Rename to FASTX and add fastq files

Update required BioCore version

Use BioCore in...

github.com/BioJulia/FASTX.jl - 8a7e44d034a54b3461ba184d82211d4e8d75c044 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update changelog

github.com/BioJulia/GeneticVariation.jl - f61b9dbcb1a11ea91181c8793ea22ec60c826419 authored almost 6 years ago by Ben J. Ward <[email protected]>

Update changelog

github.com/BioJulia/GeneticVariation.jl - 4571d5796beba7f493565a272039b1b499ebecae authored almost 6 years ago by Ben J. Ward <[email protected]>

Update required versions of dependencies

github.com/BioJulia/Bio.jl - 6172bd51605cea33870066f08c684e48d3044945 authored almost 6 years ago by Ben J. Ward <[email protected]>

Test on 0.7

github.com/BioJulia/GeneticVariation.jl - 7c98ce5b0286e0b6f4181a157efdfa438c7d20a4 authored almost 6 years ago by Ben J. Ward <[email protected]>

Add julia lower bound

github.com/BioJulia/MicrobiomePlots.jl - f098d002ba862ed7f425ade2430a8db82e7f7482 authored almost 6 years ago by Kevin Bonham <[email protected]>

Merge pull request #1 from BioJulia/kevdev

Debugging CI

github.com/BioJulia/MicrobiomePlots.jl - 7d0eea5c3faa1988132b40096f373b1a732738e2 authored almost 6 years ago by Kevin Bonham <[email protected]>

add index.md to docs

github.com/BioJulia/MicrobiomePlots.jl - c2f1aaf4985b50abb8bb3072826061954b18df95 authored almost 6 years ago by Kevin Bonham <[email protected]>

try again

github.com/BioJulia/MicrobiomePlots.jl - 8319dcf175d91fafffb18e76bd77c3476c61e9b2 authored almost 6 years ago by Kevin Bonham <[email protected]>

fix makedocs

github.com/BioJulia/MicrobiomePlots.jl - 96f32dc1795ed88a2fc843e04f5d16c10010e468 authored almost 6 years ago by Kevin Bonham <[email protected]>

add codecov

github.com/BioJulia/MicrobiomePlots.jl - 041301d1015fa9166c1c2fc9ac0a0561f9bbd1cb authored almost 6 years ago by Kevin Bonham <[email protected]>

Fix Microbiome compat

github.com/BioJulia/MicrobiomePlots.jl - 63c760599c3217c33dc231a8ed4df8351bf085ce authored almost 6 years ago by Kevin Bonham <[email protected]>

depend on Microbiome 0.3+

github.com/BioJulia/MicrobiomePlots.jl - 5fefed602d6ae9e006e51b65c2c315910b9ad616 authored almost 6 years ago by Kevin Bonham <[email protected]>

Prepare the changelog for release

github.com/BioJulia/BioSequences.jl - 3c12124952d26f85df9de88307e24ee5a93b4dab authored about 6 years ago by Ben J. Ward <[email protected]>

Fixed directory indexing. (#48)

github.com/BioJulia/BioSequences.jl - a42a40bb12d7387a79fcc4f6c74751c7b736fedb authored about 6 years ago by Dave T. Johnson <[email protected]>

Add random to test deps

github.com/BioJulia/MicrobiomePlots.jl - b627755177231113747d3533ea8d32994e6e55e2 authored about 6 years ago by Kevin Bonham <[email protected]>

Fix random seed in tests

github.com/BioJulia/MicrobiomePlots.jl - 295e68dafeca83ca7195b63ef8f1bc1c6527f3a9 authored about 6 years ago by Kevin Bonham <[email protected]>

Add docs and coverage folders

github.com/BioJulia/MicrobiomePlots.jl - 0f7266191bdf31b908e21f21af6e51336a003015 authored about 6 years ago by Kevin Bonham <[email protected]>

Update for Pkg3

github.com/BioJulia/MicrobiomePlots.jl - 85d4885eff14c308036c7fa52402d576c0db7030 authored about 6 years ago by Kevin Bonham <[email protected]>

style edits for annotation bar and abundance plot

github.com/BioJulia/MicrobiomePlots.jl - 6b4b6b0747e344c4815db8d40f01ef58462d22fb authored about 6 years ago by Kevin Bonham <[email protected]>

Allow translate(seq) to take a DNASequence (#47)

github.com/BioJulia/BioSequences.jl - 4de51b9f3bac83b4ab22513235b9d986fb463296 authored about 6 years ago by kdyrhage <[email protected]>

Cap Documenter.jl to 0.19 on Travis (#19)