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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Create SummaryInfo.jl

Basic allelic richness. To be built upon

github.com/BioJulia/PopGen.jl_archive - 6e6f0867620d89363d9ddb61268ded968993b252 authored almost 5 years ago by jdselwyn <[email protected]>
replace x with data and remove popopt

github.com/BioJulia/PopGen.jl_archive - 9712e9a8081a04eb790e2e890123301243f866aa authored almost 5 years ago by Pavel <[email protected]>
replace x with data and remove popopt

github.com/BioJulia/PopGen.jl - 9712e9a8081a04eb790e2e890123301243f866aa authored almost 5 years ago by Pavel <[email protected]>
fix everything I broke with genepop()

github.com/BioJulia/PopGen.jl - bb52c3dc16aba79859eb26768c758082a4af7e5a authored almost 5 years ago by Pavel <[email protected]>
fix everything I broke with genepop()

github.com/BioJulia/PopGen.jl_archive - bb52c3dc16aba79859eb26768c758082a4af7e5a authored almost 5 years ago by Pavel <[email protected]>
Header capitalisation

github.com/BioJulia/GenomicFeatures.jl - f2cd3ed4de69f059bab65799364a8bac0e3b18b9 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Move Interval documentation

github.com/BioJulia/GenomicFeatures.jl - 93822344e38895c8c572e4ec94225293c3de69fb authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Allow Windows 32bit to fail

github.com/BioJulia/GenomicFeatures.jl - c5da00fbaf318099c7e4d73f8e10f5f7eb4493fd authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Dev links

github.com/BioJulia/GenomicFeatures.jl - c49f1100351845b324ddd8704ca8e874c9b4708c authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Correct typo

github.com/BioJulia/GenomicFeatures.jl - 5940a1be02428b1dae4530f3286dc54ecb55029f authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update change log

github.com/BioJulia/GenomicFeatures.jl - fdd977ed265e4efd09c4cdfcea87a719c11f1b95 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - f84103de7003d67d1cfb43668cf76a5aff8977ef authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add API References section to documentation

github.com/BioJulia/GenomicFeatures.jl - 99d0aabff84c3e1bc2c4a92f79f38f988efede6d authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add documentation workflow

Use DOCUMENTER_KEY

Add push_preview to deploydocs

github.com/BioJulia/GenomicFeatures.jl - d012df91a1c5c8612ee60152f7b130128cc8f8c6 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Compatibility bounds

github.com/BioJulia/GenomicFeatures.jl - 902c63956ffa1d08bb1d3bfe3ff3c56c3366e072 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 40ee17db48155cd77e98072bb671d81cbab72e7c authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 40ee17db48155cd77e98072bb671d81cbab72e7c authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'JuliaDB' into dev

github.com/BioJulia/PopGen.jl - 905935672b2983ff3d35cfeaddaeab534d782bd5 authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'JuliaDB' into dev

github.com/BioJulia/PopGen.jl_archive - 905935672b2983ff3d35cfeaddaeab534d782bd5 authored almost 5 years ago by Pavel <[email protected]>
clean up Read.jl and optimize a bit

added phase() function to make file importers more modular and allow map() usage within the read...

github.com/BioJulia/PopGen.jl_archive - 59e837ce9dd1c4a3e787c760edd0ba0669baf7c6 authored almost 5 years ago by Pavel <[email protected]>
clean up Read.jl and optimize a bit

added phase() function to make file importers more modular and allow map() usage within the read...

github.com/BioJulia/PopGen.jl - 59e837ce9dd1c4a3e787c760edd0ba0669baf7c6 authored almost 5 years ago by Pavel <[email protected]>
Merge pull request #15 from BioJulia/register/MicrobiomePlots/v0.2.0

Register MicrobiomePlots: 0.2.0

github.com/BioJulia/BioJuliaRegistry - 68f04f6e2cb66c4f25f1fcf46adba3291c50e6fa authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge branch 'master' into register/MicrobiomePlots/v0.2.0

github.com/BioJulia/BioJuliaRegistry - 2c5e4eabc5c46e323a12ab91025f6b84da214c06 authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge pull request #24 from BioJulia/registrator/microbiome/3bd8f0ae/v0.5.1

New version: Microbiome v0.5.1

github.com/BioJulia/BioJuliaRegistry - 3fffed309b151a9d0c0b18f532888ce5f2e11853 authored almost 5 years ago by Ben J. Ward <[email protected]>
Added GZip compat entry

github.com/BioJulia/GenomicAnnotations.jl - 53ff4b8bb6f14c3250f1c4ead00b9a2237154245 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Merge branch 'master' of github.com:kdyrhage/GenomicAnnotations.jl

github.com/BioJulia/GenomicAnnotations.jl - 8888ef2c8a4dc5d9c209a6fac6a2e71e3ecc6f08 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated version number

github.com/BioJulia/GenomicAnnotations.jl - b0d1e65973d961007cfad4cab931fbfae93afd46 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Delete REQUIRE

github.com/BioJulia/GenomicAnnotations.jl - 4b365bad3c49804aa54b734483662b670490590e authored almost 5 years ago by kdyrhage <[email protected]>
Delete Manifest.toml

github.com/BioJulia/GenomicAnnotations.jl - a9a5fe037288aa3fa9ad10d8e6e4d53b42ed62cc authored almost 5 years ago by kdyrhage <[email protected]>
Allow readgbk to take an IOStream

github.com/BioJulia/GenomicAnnotations.jl - fa47b8a91f939e7c90c83f192f0c62104e2095fc authored almost 5 years ago by Karl Dyrhage <[email protected]>
Don't restrict the julia version allowed as this is a patch release

github.com/BioJulia/Libz.jl - 1a7147d8f3c6e9abcd4771c1f6331d0dcae26a15 authored almost 5 years ago by Ben J. Ward <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 4658e45dc633dab69cd9b7e8ccb3002c07781fa7 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 4658e45dc633dab69cd9b7e8ccb3002c07781fa7 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 8cf3dafa097f0d3bf05f38bbe3e979124192326c authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 8cf3dafa097f0d3bf05f38bbe3e979124192326c authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Add a compat entry for BufferedStreams as advised by registry ci

github.com/BioJulia/Libz.jl - 8c35d23f38cfff0a763fe34a3e5659a07c70cc84 authored almost 5 years ago by Ben J. Ward <[email protected]>
Set correct version in Project file

github.com/BioJulia/Libz.jl - 151b869b4ff70d55e6010a62397f27c679a5d5d0 authored almost 5 years ago by Ben J. Ward <[email protected]>
Updated sequence() docstring

github.com/BioJulia/GenomicAnnotations.jl - 7ca1c0437d2ce6c6fcf32f5071779974c2ae2a1f authored almost 5 years ago by Karl Dyrhage <[email protected]>
Fixed typo

github.com/BioJulia/GenomicAnnotations.jl - 6b792835e451876984d2f08e0779728a7ec7e079 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added checks for v1.3

github.com/BioJulia/GenomicAnnotations.jl - 7a33c621a4ce9206b55fcd77833deba0a57a6959 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added translate keyword to sequence()

github.com/BioJulia/GenomicAnnotations.jl - 01dc5442296619211d9db0c1a0f227c1606d4560 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated docs

github.com/BioJulia/GenomicAnnotations.jl - ca8e6de4accd4b4edbdef8b7d562b59bc2bedef8 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated Documenter version

github.com/BioJulia/GenomicAnnotations.jl - cff69f1303d179a78302e55f890bde68ac684bc8 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated docs

github.com/BioJulia/GenomicAnnotations.jl - 747b313c78b2d510fce425200391f1707abc4786 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Removed iscds

github.com/BioJulia/GenomicAnnotations.jl - 9c592176492ad74756174a82a874399cd781567f authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated README

github.com/BioJulia/GenomicAnnotations.jl - 11961d2350d22bbf684efb4776c4ee9178600832 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Updated macro to allow an Array{Chromosome}, to ignore Ref(), and to take new keywords (CDS, rRNA, etc.)

github.com/BioJulia/GenomicAnnotations.jl - 51f39f413d72a05e02a00d19b3e014aee7db1d05 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Added iscomplete()

github.com/BioJulia/GenomicAnnotations.jl - 38153a40017a5547efd758744020fc55df0a4d20 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Changed Gene structure and API

github.com/BioJulia/GenomicAnnotations.jl - d70ea7f8ad5188b3e73df5c1691086e886d66226 authored almost 5 years ago by Karl Dyrhage <[email protected]>
Add CompatHelper workflow

github.com/BioJulia/GenomicFeatures.jl - 96a8a4cee431e8617f672334c4b9bb03fc8258f1 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add IntervalTrees link

github.com/BioJulia/GenomicFeatures.jl - e411553792432366b5666e12da5d574261c8ab36 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Align readme sections with branding

github.com/BioJulia/GenomicFeatures.jl - 2e530610c667e1d9713444e296d896c847fb3b91 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Match descriptions

github.com/BioJulia/GenomicFeatures.jl - a4fae798c2a65e5bb53102756d4d9ff76f516542 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Remove obsolete house keeping files

Code of conduct and contributing files are now under https://github.com/BioJulia/Contributing.

github.com/BioJulia/GenomicFeatures.jl - 83cf4a6115562ee1fbc714e2b46ebef71adfa88c authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update documented types

Closes #17.

github.com/BioJulia/GenomicFeatures.jl - 798c560bd7117eaaa2c5813adf193ba62f3ed77b authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update installation instructions

github.com/BioJulia/GenomicFeatures.jl - 00674317c7fa573f718e85fd1385f017f5c55743 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Move sticker

github.com/BioJulia/GenomicFeatures.jl - e23aedfb9230920aedcef7800fdc5d133ba283a0 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Migrate from Discord to Gitter

github.com/BioJulia/GenomicFeatures.jl - 2a40c480a45881a6af62cc682f575dd8b35d7eb7 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Use default icon style

github.com/BioJulia/GenomicFeatures.jl - 23c40b39c7b795727acbab4d3ada41d9cc309ada authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Use # for headers

github.com/BioJulia/GenomicFeatures.jl - cbaf46cb713e390eebc63d1580d0cddcf019bfad authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Remove hard wraps (documentation)

github.com/BioJulia/GenomicFeatures.jl - 2ad09eb8bbe7485b0c60462dc19e701e88970baa authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update coverage

Coverage

github.com/BioJulia/GenomicFeatures.jl - 9bcbf14a7c9a400924a6644acc0c383aa060cc68 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update Documenter

github.com/BioJulia/GenomicFeatures.jl - ee66a2d949ef8da0ec0f190f3b83994c5d7f1d92 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update CI

- Add Julia v1.1
- Add Julia v1.2
- Add Julia v1.3

github.com/BioJulia/GenomicFeatures.jl - 2c4d6fb41410c57345055ac58c60cb4be39c5409 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add change log

github.com/BioJulia/GenomicFeatures.jl - a694df358acc1607ca869606cc5a2fbf1b8ba80d authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Project.toml

github.com/BioJulia/GenomicFeatures.jl - 1cea1a76898e5a28653564041f38b941635e3592 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl_archive - 6c023c8afe1b38e1c697fefd9b73e1532904c156 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl - 6c023c8afe1b38e1c697fefd9b73e1532904c156 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 9316bcd5cf819494b6253f9792f81bbcfa876720 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 9316bcd5cf819494b6253f9792f81bbcfa876720 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 386bcd05e2d89a5aba598bd8abd658d71f1086c9 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 386bcd05e2d89a5aba598bd8abd658d71f1086c9 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl - 25e89964c332c57c103e27ffc23440183831de88 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl_archive - 25e89964c332c57c103e27ffc23440183831de88 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update .gitignore

github.com/BioJulia/GenomicFeatures.jl - c9314c423522aab6d30c159e0c3892c1d12694b8 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 7b3177da01e24693e536dcf98ec38c8af0beba37 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 7b3177da01e24693e536dcf98ec38c8af0beba37 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - a7babe01cd21c6b2ab396aa9bf2d73c387fe2dd9 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - a7babe01cd21c6b2ab396aa9bf2d73c387fe2dd9 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - f8db2552ba3d63a0ea11f7b3bcc2f51927cb25eb authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - f8db2552ba3d63a0ea11f7b3bcc2f51927cb25eb authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 277201a5ac3a60c5a05e26f6faf59fe486a67f39 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 277201a5ac3a60c5a05e26f6faf59fe486a67f39 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
all sorts of stuff

more JuliaDB effort (incomplete), changing carbon img to gif

github.com/BioJulia/PopGen.jl_archive - 41789430f528e0384e32cb5d483b0edcb91c0030 authored almost 5 years ago by Pavel <[email protected]>
all sorts of stuff

more JuliaDB effort (incomplete), changing carbon img to gif

github.com/BioJulia/PopGen.jl - 41789430f528e0384e32cb5d483b0edcb91c0030 authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'JuliaDB' of https://github.com/pdimens/PopGen.jl into JuliaDB

github.com/BioJulia/PopGen.jl - d21272df1655775fd8035275773cf4613a5ff218 authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'JuliaDB' of https://github.com/pdimens/PopGen.jl into JuliaDB

github.com/BioJulia/PopGen.jl_archive - d21272df1655775fd8035275773cf4613a5ff218 authored almost 5 years ago by Pavel <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl_archive - 5658976adf9ecf49aa726dcb641a60d9d347fe34 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Add files via upload

github.com/BioJulia/PopGen.jl - 5658976adf9ecf49aa726dcb641a60d9d347fe34 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - d773890e1f4f65dc186fcfde68397937a4e9541b authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - d773890e1f4f65dc186fcfde68397937a4e9541b authored almost 5 years ago by Pavel V. Dimens <[email protected]>
New logo!

github.com/BioJulia/PopGen.jl_archive - de633adf2d2c51f15afc9ed0033cf3c8d8a14659 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
New logo!

github.com/BioJulia/PopGen.jl - de633adf2d2c51f15afc9ed0033cf3c8d8a14659 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #23 from BioJulia/registrator/biobakeryutils/fa5322f5/v0.2.0

New package: BiobakeryUtils v0.2.0

github.com/BioJulia/BioJuliaRegistry - 4f1f2acee8a08d4667e17dfa4e13c95403236099 authored almost 5 years ago by Ben J. Ward <[email protected]>
more tables testing

github.com/BioJulia/PopGen.jl - 786932503145d87a55c4cc3ced0b318e55640b92 authored almost 5 years ago by Pavel <[email protected]>
more tables testing

github.com/BioJulia/PopGen.jl_archive - 786932503145d87a55c4cc3ced0b318e55640b92 authored almost 5 years ago by Pavel <[email protected]>
Update AlleleFreq.jl

github.com/BioJulia/PopGen.jl_archive - 759732ad1f73c7ea6b9026a48b6d691d88cfafc7 authored almost 5 years ago by Pavel <[email protected]>
Update AlleleFreq.jl

github.com/BioJulia/PopGen.jl - 759732ad1f73c7ea6b9026a48b6d691d88cfafc7 authored almost 5 years ago by Pavel <[email protected]>
start table output setup

github.com/BioJulia/PopGen.jl - 8803dc0391c8f2d0669c5832c93790b2dd4b5a61 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
start table output setup

github.com/BioJulia/PopGen.jl_archive - 8803dc0391c8f2d0669c5832c93790b2dd4b5a61 authored almost 5 years ago by Pavel V. Dimens <[email protected]>