Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Temporary: use a custom branch of RegistryCI.jl (#32)

* Temporary: use a custom branch of RegistryCI.jl

* Update automerge.yml

* Update Project....

github.com/BioJulia/BioJuliaRegistry - a0fcbe43832297cdf974f033ff1ba96cc89d17e4 authored almost 5 years ago by Dilum Aluthge <[email protected]>
Merge pull request #30 from BioJulia/registrator/microbiome/3bd8f0ae/v0.6.0

New version: Microbiome v0.6.0

@DilumAluthge Merging this now - let me know if you'd like me ...

github.com/BioJulia/BioJuliaRegistry - 1f9b4a33517f58bd24b507700259f29afb26d41d authored almost 5 years ago by Kevin Bonham <[email protected]>
More efficient ASCII/LongSequence conversion (#83)

* Move codetype trait to alphabet.jl

* Specialize constructors and encode_copy! for ascii lon...

github.com/BioJulia/BioSequences.jl - 7fc618e2f4d0c65398468623025425b4476c2309 authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
Update Project.toml

github.com/BioJulia/BioSymbols.jl - 0bfe6ce9e1717f12f3744417e006b197a54e9b69 authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge branch 'release/v1.0.4'

github.com/BioJulia/GenomicFeatures.jl - e7ce4e36210407fb9f05e36c303c562aad30d9c0 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 99a208497b11478a95f948726aa1efcf70b71c2f authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - 2543d77f7328696358f6ef5271a4ba621af04c84 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
remove old het_observed function

github.com/BioJulia/PopGen.jl_archive - d2c3ea575cdba0c250aa6a15087348634167eea9 authored almost 5 years ago by Pavel <[email protected]>
remove old het_observed function

github.com/BioJulia/PopGen.jl - d2c3ea575cdba0c250aa6a15087348634167eea9 authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl_archive - 6159497d32ce008a0c30b8fc59a3b44f906984ec authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl - 6159497d32ce008a0c30b8fc59a3b44f906984ec authored almost 5 years ago by Pavel <[email protected]>
small improvements to legibility

github.com/BioJulia/PopGen.jl_archive - 454c15c4e307d6a4dd800594cc98c65ea91c8252 authored almost 5 years ago by Pavel <[email protected]>
small improvements to legibility

github.com/BioJulia/PopGen.jl - 454c15c4e307d6a4dd800594cc98c65ea91c8252 authored almost 5 years ago by Pavel <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - e974a45f01f2214e5fbe8792a76b23c4cace97ad authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - e974a45f01f2214e5fbe8792a76b23c4cace97ad authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - c194ad34e3facaca53b4953d66029b7a5b9f5a10 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - c194ad34e3facaca53b4953d66029b7a5b9f5a10 authored almost 5 years ago by Pavel V. Dimens <[email protected]>
Faster copying of LongSeq (#85)

github.com/BioJulia/BioSequences.jl - 962958e2fa780535529f951520b9fabe5890bab4 authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
New version: BioSymbols v4.0.2 (#31)

UUID: 3c28c6f8-a34d-59c4-9654-267d177fcfa9
Repo: https://github.com/BioJulia/BioSymbols.jl.git
...

github.com/BioJulia/BioJuliaRegistry - bec60d037d250266762d3e30f2a041cf6bf7ad65 authored almost 5 years ago by Helix <[email protected]>
Bump version number

github.com/BioJulia/BioSymbols.jl - 67d8c0a9a2ced0e333e4a20385399da9839708c8 authored almost 5 years ago by Ben J. Ward <[email protected]>
Change small lookup tables to Tuple (#36)

github.com/BioJulia/BioSymbols.jl - 8f6d212e6691374dfae4717b662fda80c6fe13bb authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
Change small lookup tables to Tuple

github.com/BioJulia/BioSymbols.jl - 9c68815c2dcc31d2241fc63facc27e516eb77edb authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
Restrict to StatsPlots 0.13

github.com/BioJulia/MicrobiomePlots.jl - f69298c4e8405d64d40891d50cceb28457445cba authored almost 5 years ago by Kevin Bonham <[email protected]>
Fix reexports and docs

github.com/BioJulia/MicrobiomePlots.jl - 81f1582d9219dec65d10486d68661c1ed1993f51 authored almost 5 years ago by Kevin Bonham <[email protected]>
New version: Microbiome v0.6.0

UUID: 3bd8f0ae-a0f2-5238-a5af-e1b399a4940c
Repo: https://github.com/BioJulia/Microbiome.jl.git
T...

github.com/BioJulia/BioJuliaRegistry - b53705833177845436a962619a13fb658e89c3bf authored almost 5 years ago by BioJuliaBot <[email protected]>
Work on reexports of plots and docs

github.com/BioJulia/MicrobiomePlots.jl - 826a40885e3c0bcda005aa6737b7dc50db0840ff authored almost 5 years ago by Kevin Bonham <[email protected]>
Add TagBot

github.com/BioJulia/MicrobiomePlots.jl - 626fd2f6a240b16a5703526997d399a16eb30009 authored almost 5 years ago by Kevin Bonham <[email protected]>
Use new Documenter

github.com/BioJulia/MicrobiomePlots.jl - 8f3cc0912c41b5ff998dac33b6636154af36b6cf authored almost 5 years ago by Kevin Bonham <[email protected]>
Allow Microbiome 0.6

github.com/BioJulia/MicrobiomePlots.jl - 6fbf4a9b0c98b0a5f976e70c47f828de6b74972c authored almost 5 years ago by Kevin Bonham <[email protected]>
Add BioJuliaBot as an authorised user for automerge purposes

github.com/BioJulia/BioJuliaRegistry - c6647f1a9805e93ef02a8a3f6dce3c55184895ff authored almost 5 years ago by Ben J. Ward <[email protected]>
Add General as AutoMerge dependency

github.com/BioJulia/BioJuliaRegistry - 53c03bef48072281cb70ef9e7a0a3af762b1ec84 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add AutoMerge action

github.com/BioJulia/BioJuliaRegistry - 10d72a6685d2ce22b46c7b1dbcfc571d13d9440a authored almost 5 years ago by Ben J. Ward <[email protected]>
Update readme

github.com/BioJulia/BioJuliaRegistry - 14cc9b95ffdb60eae7d0bd25db5dd8137af93a0a authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge branch 'master' of github.com:BioJulia/BioJuliaRegistry

github.com/BioJulia/BioJuliaRegistry - 9d61ea8060e1c9d8aeaaf571201a0f2f684e3d04 authored almost 5 years ago by Ben J. Ward <[email protected]>
Fixup CI config

github.com/BioJulia/BioJuliaRegistry - 7c91355533a228c548f545923de308c3db46e5a2 authored almost 5 years ago by Ben J. Ward <[email protected]>
Update readme badges

github.com/BioJulia/BioSequences.jl - 61b8faeddb954317a1dbe67f07fd15c592fbd91d authored almost 5 years ago by Ben J. Ward <[email protected]>
Don't build docs on travis

github.com/BioJulia/BioSequences.jl - 22c1d94df386574b1e86848d0cf6e4f653db3de7 authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge pull request #29 from jgreener64/mmtf

MMTF file examples

github.com/BioJulia/BioFmtSpecimens - a88ddc9ceca014f47716406f0ede706a70bbbe49 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add dates to changelog

github.com/BioJulia/GenomicFeatures.jl - f31784d0ab8952055ccce763e57309a1a8638b37 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 7ab6c618f9696c443d9bdfdeee5411d733ad8ee9 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'compat'

github.com/BioJulia/GenomicFeatures.jl - d4a5c80e065719ee3582c957078442fb05f9f6af authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update Compat format (#26)

* Update Compat format

* Revert julia compat

github.com/BioJulia/BioJuliaRegistry - 9e0f251a3c3e6c153ea7d270edb1f3bd13d068b8 authored almost 5 years ago by Kevin Bonham <[email protected]>
Update compat format (#25)

* Update compat format

* Update Compat.toml

Co-authored-by: Ben J. Ward <benjward@protonma...

github.com/BioJulia/BioJuliaRegistry - 88b32350b60618b195d213200ae0026197af761d authored almost 5 years ago by Kevin Bonham <[email protected]>
Merge pull request #28 from DilumAluthge/dpa/fix-bad-compat-entry

Fix the bad syntax in a compat entry for `MicrobiomePlots`

github.com/BioJulia/BioJuliaRegistry - 57c24234149e9ca8bac68b67280af214eadc9af0 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add GitHub Action for building the docs

github.com/BioJulia/BioSequences.jl - 813c8e93e9dd6cd942f81dd9d326f79eb5c9702c authored almost 5 years ago by Ben J. Ward <[email protected]>
Faster conversion to String #80

github.com/BioJulia/BioSequences.jl - 18f540d7f0eae670acf9da2e9b5f5d0f3fd6c58a authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
Faster and more general kmer reverting #79

github.com/BioJulia/BioSequences.jl - ca93ee3ed9d49c6efb455faed65897932ee38f79 authored almost 5 years ago by Jakob Nybo Nissen <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - e5ebf2c30a3096b65bce91e63db9419b9ba7168f authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Correct CompatHelper configuration

github.com/BioJulia/GenomicFeatures.jl - 8c823a1f47ac0149e91e1cad78a6f04891d3acc5 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'compathelper/new_version/2020-01-07-04-02-45-709-383418431' into compat

github.com/BioJulia/GenomicFeatures.jl - 5891a4f34cd037ac7722ee6fe4f129f548887456 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'compathelper/new_version/2020-01-07-04-02-51-483-4171759597' into compat

github.com/BioJulia/GenomicFeatures.jl - 0809a828f8b1578572dc9cc2d0c08fee4ff5da95 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
CompatHelper: bump compat for "ColorTypes" to "0.9"

github.com/BioJulia/GenomicFeatures.jl - 1fb75ac8e73495acaedd36ee57e7bf001e554e84 authored almost 5 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "FixedPointNumbers" to "0.7"

github.com/BioJulia/GenomicFeatures.jl - 0c9b40dfae3549c10e1895a9d7fb8f188b877577 authored almost 5 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 32e6c0f8b02c60832f3fa8cf65e907cd2860f8c6 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'hotfix/strand'

github.com/BioJulia/GenomicFeatures.jl - e0783f58869a890662da752953551996a99469ff authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - ee7244d1db246a82244fe51bfe703a8ec2c8229c authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Fix the bad syntax in a compat entry for `Microbiome`

github.com/BioJulia/BioJuliaRegistry - c4db63f1c2c7a33dbb1ecd761bc9430aecb50687 authored almost 5 years ago by Dilum Aluthge <[email protected]>
Correct typo in Strand constructor

github.com/BioJulia/GenomicFeatures.jl - e74110eaeabe88e7ccb1fafb527ed8df28fcc381 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Flatten strand conversion

github.com/BioJulia/GenomicFeatures.jl - e1a9c96ce2dfd9e0c95d17f8949d58f3e5bbc736 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Flatten isordered method

github.com/BioJulia/GenomicFeatures.jl - 2944cc80c32196a16b6b860c7918ff72bfad885e authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Flatten isless method

github.com/BioJulia/GenomicFeatures.jl - ae16fa9ed2965918028936f9efb67614c1738321 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Remove conversion

github.com/BioJulia/GenomicFeatures.jl - c8751c94b89094a1bd2b958c6618f02f47fbeb7d authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Flatten compare_overlap

github.com/BioJulia/GenomicFeatures.jl - 146425b358f3f5275be30ec700686b228fde2d4a authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Remove hard wraps (code)

github.com/BioJulia/GenomicFeatures.jl - ef89542c826b5e69413b7b30708616eddca6b165 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Elucidate function return

github.com/BioJulia/GenomicFeatures.jl - f105032327c66f0367b4d6071b893bce5438a34d authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Add parameter type to bulk insertion sort flag

github.com/BioJulia/GenomicFeatures.jl - 289a2edd4585177f97c92bc30b22a6983ef15ba8 authored almost 5 years ago by Ciarán O'Mara <[email protected]>
Update changelog

github.com/BioJulia/GenomicFeatures.jl - 11fcb379b9eb0ac901c4053644cacecd6fa1cc1e authored almost 5 years ago by Ciarán O'Mara <[email protected]>
replace if syntax

replaced existing if syntax with more appropriate `all` command, removing the need for `unique` ...

github.com/BioJulia/PopGen.jl_archive - cb815b47e77c231e58f28438cecf2a1a39e5b5f7 authored almost 5 years ago by Pavel <[email protected]>
replace if syntax

replaced existing if syntax with more appropriate `all` command, removing the need for `unique` ...

github.com/BioJulia/PopGen.jl - cb815b47e77c231e58f28438cecf2a1a39e5b5f7 authored almost 5 years ago by Pavel <[email protected]>
improve observed het functions

added hierfstat-like matrix-matrix comparisons of diploids for heterozygosity. Much faster (10-1...

github.com/BioJulia/PopGen.jl - 18472c79f979dff8da1f7e6ebcf2a9a6ba67faa3 authored almost 5 years ago by Pavel <[email protected]>
improve observed het functions

added hierfstat-like matrix-matrix comparisons of diploids for heterozygosity. Much faster (10-1...

github.com/BioJulia/PopGen.jl_archive - 18472c79f979dff8da1f7e6ebcf2a9a6ba67faa3 authored almost 5 years ago by Pavel <[email protected]>
Add 1.3 to travis

github.com/BioJulia/MicrobiomePlots.jl - 67f98894130ade4a0242ac267f019a5e986975b8 authored almost 5 years ago by Kevin Bonham <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - b62ad35a1a51f5898e99436ca467ee8f7d22b08b authored almost 5 years ago by Ciarán O'Mara <[email protected]>
remove dots from pdbextension

github.com/BioJulia/BioStructures.jl - 9787bf66c160f208958bddf8cebb573bcc6c9e95 authored almost 5 years ago by Joe Greener <[email protected]>
MMTF tests, generatechainid

github.com/BioJulia/BioStructures.jl - a8f0497c5b42702f98ba1ae555068c2161821b28 authored almost 5 years ago by Joe Greener <[email protected]>
Merge pull request #27 from BioJulia/benjward/ci_and_niceties

Add some CI and niceties

github.com/BioJulia/BioJuliaRegistry - 2f36abc4de40c052677faca5ee7cd7dfe6032003 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add draft CI configuration

github.com/BioJulia/BioJuliaRegistry - 9bd934246612d1dbdc2552cf8cf1e196fd8ac697 authored almost 5 years ago by Ben J. Ward <[email protected]>
Add basic README outline

github.com/BioJulia/BioJuliaRegistry - 02df009c1ae50934753d4b9ee34bbb50ce995361 authored almost 5 years ago by Ben J. Ward <[email protected]>
update versions

github.com/BioJulia/MicrobiomePlots.jl - b35cfd00f02de994ad4f41b3adde88e5f4a4bfe3 authored almost 5 years ago by Kevin Bonham <[email protected]>
MMTF file examples

github.com/BioJulia/BioFmtSpecimens - 1fd9519b4be8d93d688c49ea39ba020d6589c674 authored almost 5 years ago by Joe Greener <[email protected]>
Fix package UUID

github.com/BioJulia/GenomicFeatures.jl - 4014c57348689e1a07a1588bfe15faf6b9bd2b17 authored almost 5 years ago by Ben J. Ward <[email protected]>
Merge pull request #22 from BioJulia/release/v1.0.1

release/v1.0.1

github.com/BioJulia/GenomicFeatures.jl - 028580e85bbc11f546c8eee76f638f61e3fafc7a authored almost 5 years ago by Ciarán O'Mara <[email protected]>
expand_disordered tests and docs

github.com/BioJulia/BioStructures.jl - 1de8cb141c135984375d4ec0a52eeebc38e9ac71 authored almost 5 years ago by Joe Greener <[email protected]>
expand_disorder flag to unroll containers

github.com/BioJulia/BioStructures.jl - 74f971d98a9d033245cae3a4db37d5ca9a5ef4df authored almost 5 years ago by Joe Greener <[email protected]>
allow groups with the same name, record metadata

github.com/BioJulia/BioStructures.jl - 37089d405e3a038ab34e03acb920caca923e0e0f authored almost 5 years ago by Joe Greener <[email protected]>
separate entities, correct chain number, sequences

github.com/BioJulia/BioStructures.jl - 3e20604af61ac9c77d2522911959845be1a49d47 authored almost 5 years ago by Joe Greener <[email protected]>
require MMTF

github.com/BioJulia/BioStructures.jl - ea19b9ddc8d5252122b266713336d6fa0ae679d4 authored almost 5 years ago by Joe Greener <[email protected]>
het correction

other minor fixes

github.com/BioJulia/PopGen.jl - 0ae70eb3e36a6a723f2e7d32509007310009b174 authored almost 5 years ago by Pavel <[email protected]>
het correction

other minor fixes

github.com/BioJulia/PopGen.jl_archive - 0ae70eb3e36a6a723f2e7d32509007310009b174 authored almost 5 years ago by Pavel <[email protected]>
non-diploid error for relatedness

github.com/BioJulia/PopGen.jl - 2045175ae70a08bdc9f67b391459a9dbdaeecc7f authored almost 5 years ago by Pavel <[email protected]>
non-diploid error for relatedness

github.com/BioJulia/PopGen.jl_archive - 2045175ae70a08bdc9f67b391459a9dbdaeecc7f authored almost 5 years ago by Pavel <[email protected]>
alphabetize deps

github.com/BioJulia/PopGen.jl_archive - 25fd44ff08ebc34e931486e7d53eb4c97874aba1 authored almost 5 years ago by Pavel <[email protected]>
alphabetize deps

github.com/BioJulia/PopGen.jl - 25fd44ff08ebc34e931486e7d53eb4c97874aba1 authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl - addd717694e08e28cfbe561ba963d8abc817603f authored almost 5 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl_archive - addd717694e08e28cfbe561ba963d8abc817603f authored almost 5 years ago by Pavel <[email protected]>
start migration to plot recipes

github.com/BioJulia/PopGen.jl_archive - ff3ab137753e8acc33946707ddbb2bd11f26d7ab authored almost 5 years ago by Pavel <[email protected]>
start migration to plot recipes

github.com/BioJulia/PopGen.jl - ff3ab137753e8acc33946707ddbb2bd11f26d7ab authored almost 5 years ago by Pavel <[email protected]>
add permutation test

github.com/BioJulia/PopGen.jl_archive - 420347d0f0d1ffefa566792945c06a481f8d47a7 authored almost 5 years ago by jdselwyn <[email protected]>
add permutation test

github.com/BioJulia/PopGen.jl - 420347d0f0d1ffefa566792945c06a481f8d47a7 authored almost 5 years ago by jdselwyn <[email protected]>
transfer of code from old mmtf-struc branch

github.com/BioJulia/BioStructures.jl - 8ca31c6007bd17b4d368a5891b560bd89aeb25ca authored almost 5 years ago by Joe Greener <[email protected]>