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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Merge branch 'pdimens' of https://github.com/pdimens/PopGen.jl into pdimens

github.com/BioJulia/PopGen.jl - c09158e604b8899cf4db19a8d2c00c668a7529d1 authored over 4 years ago by Pavel <[email protected]>
docs reorganization

github.com/BioJulia/PopGen.jl - a8d9ed26a717b58ba62540ae30bca0ba8415b318 authored over 4 years ago by Pavel <[email protected]>
docs reorganization

github.com/BioJulia/PopGen.jl_archive - a8d9ed26a717b58ba62540ae30bca0ba8415b318 authored over 4 years ago by Pavel <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl_archive - d11378f90b0039d7d620894cd456bb808ecb9ff2 authored over 4 years ago by jdselwyn <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl - d11378f90b0039d7d620894cd456bb808ecb9ff2 authored over 4 years ago by jdselwyn <[email protected]>
update Read.jl docstrings

github.com/BioJulia/PopGen.jl_archive - e4fad0895c36b40a2006a7f7897b8c1fb402e0c9 authored over 4 years ago by Pavel V. Dimens <[email protected]>
update Read.jl docstrings

github.com/BioJulia/PopGen.jl - e4fad0895c36b40a2006a7f7897b8c1fb402e0c9 authored over 4 years ago by Pavel V. Dimens <[email protected]>
fix nancycats formatting

github.com/BioJulia/PopGen.jl - 63ef20fcb384b4f5f033f7bf965af8efeac3155d authored over 4 years ago by Pavel V. Dimens <[email protected]>
fix nancycats formatting

github.com/BioJulia/PopGen.jl_archive - 63ef20fcb384b4f5f033f7bf965af8efeac3155d authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update Read.jl

add Missing method for phase_dip

github.com/BioJulia/PopGen.jl - 57fa346a553b52d5218e02ba007ae476daaf2676 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update Read.jl

add Missing method for phase_dip

github.com/BioJulia/PopGen.jl_archive - 57fa346a553b52d5218e02ba007ae476daaf2676 authored over 4 years ago by Pavel V. Dimens <[email protected]>
add CSV to deps

github.com/BioJulia/PopGen.jl - 57676daa18d57cb90b7c1d8d89a78bcaf923f2e8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
add CSV to deps

github.com/BioJulia/PopGen.jl_archive - 57676daa18d57cb90b7c1d8d89a78bcaf923f2e8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl_archive - a26d2302eb1e849f19241396de29f2ded3a947aa authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl - a26d2302eb1e849f19241396de29f2ded3a947aa authored over 4 years ago by Pavel V. Dimens <[email protected]>
add CSV dep

github.com/BioJulia/PopGen.jl - 6f852e2abd6a7a8550f6c72f0a89a6a850d67363 authored over 4 years ago by Pavel V. Dimens <[email protected]>
add CSV dep

github.com/BioJulia/PopGen.jl_archive - 6f852e2abd6a7a8550f6c72f0a89a6a850d67363 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl - b5296a4192bb22eb3ae509490922ae3f00ac897b authored over 4 years ago by jdselwyn <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl_archive - b5296a4192bb22eb3ae509490922ae3f00ac897b authored over 4 years ago by jdselwyn <[email protected]>
Merge pull request #7 from BioJulia/compathelper/new_version/2020-02-06-12-04-14-578-1573601876

CompatHelper: bump compat for "RecipesBase" to "0.8"

github.com/BioJulia/MicrobiomePlots.jl - 581fc9119e1655484eb3f198dc09fa9691100133 authored over 4 years ago by Kevin Bonham <[email protected]>
CompatHelper: bump compat for "RecipesBase" to "0.8"

github.com/BioJulia/MicrobiomePlots.jl - 9cc92e87ca15627e72d40b225742083e6e1ad3dd authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Removed comments

github.com/BioJulia/GenomicAnnotations.jl - 358aa798ce7b8a461e11813264d7c9594f79bad4 authored over 4 years ago by Karl Dyrhage <[email protected]>
entire rewrite of delimited() and genepop() and read()

delimtied is faster and lighter
genepop is same speed but uses up to 70% less RAM
read is parsim...

github.com/BioJulia/PopGen.jl - 1b54863a8444c65ebe359c92608263c9fca0df03 authored over 4 years ago by Pavel <[email protected]>
entire rewrite of delimited() and genepop() and read()

delimtied is faster and lighter
genepop is same speed but uses up to 70% less RAM
read is parsim...

github.com/BioJulia/PopGen.jl_archive - 1b54863a8444c65ebe359c92608263c9fca0df03 authored over 4 years ago by Pavel <[email protected]>
Delete Project.toml

github.com/BioJulia/PopGen.jl_archive - 744548631ccc089816dccb8f2c6b16d67244d251 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete Project.toml

github.com/BioJulia/PopGen.jl - 744548631ccc089816dccb8f2c6b16d67244d251 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete Manifest.toml

github.com/BioJulia/PopGen.jl_archive - 65d16e2b15630800eeaf59197fbc12d6c71e4a17 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete Manifest.toml

github.com/BioJulia/PopGen.jl - 65d16e2b15630800eeaf59197fbc12d6c71e4a17 authored over 4 years ago by Pavel V. Dimens <[email protected]>
add playtest folder and add to gitignore

github.com/BioJulia/PopGen.jl - 4a540654acda70ee085e80e6be759486316f3412 authored over 4 years ago by Pavel <[email protected]>
add playtest folder and add to gitignore

github.com/BioJulia/PopGen.jl_archive - 4a540654acda70ee085e80e6be759486316f3412 authored over 4 years ago by Pavel <[email protected]>
minor playtest organization

github.com/BioJulia/PopGen.jl_archive - 91e5778692163f9eab3b1629cdb86040a34fc73f authored over 4 years ago by Pavel <[email protected]>
minor playtest organization

github.com/BioJulia/PopGen.jl - 91e5778692163f9eab3b1629cdb86040a34fc73f authored over 4 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl - da8897a302c4cfee032a000f1c3a5338d9e51455 authored over 4 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl_archive - da8897a302c4cfee032a000f1c3a5338d9e51455 authored over 4 years ago by Pavel <[email protected]>
leverage CSV.jl for delim file import

github.com/BioJulia/PopGen.jl - ed186d5a4b26362af192be938375fa8bd23a75e4 authored over 4 years ago by Pavel <[email protected]>
leverage CSV.jl for delim file import

github.com/BioJulia/PopGen.jl_archive - ed186d5a4b26362af192be938375fa8bd23a75e4 authored over 4 years ago by Pavel <[email protected]>
New version: BiobakeryUtils v0.3.0 (#35)

UUID: fa5322f5-bd84-5069-834a-abf3230fb8f8
Repo: https://github.com/BioJulia/BiobakeryUtils.jl.g...

github.com/BioJulia/BioJuliaRegistry - a15e77eeaa217a4de939ed47cffccec58252153e authored over 4 years ago by Helix <[email protected]>
Add .github templates

github.com/BioJulia/XAM.jl - 78d2329f708c2b1917aa9d393b27a31b11f65aee authored over 4 years ago by Ciarán O'Mara <[email protected]>
CompatHelper workflow

github.com/BioJulia/XAM.jl - b2ec34047414eca35d131dd506ba8e1ca33c750c authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/XAM.jl - 17ea000940ce70bdd05785b48e29674a7727371c authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

github.com/BioJulia/GFF3.jl - d721fb9cbb535ed03dcdadd060f6ea0c5bab4f65 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/GFF3.jl - 19f2aa48e18880d113a9aeb14427ec8bcc4fa7d3 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add generated files

github.com/BioJulia/GFF3.jl - 76b8d232c4442438fabdff80784fe86ecb3870f9 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Initial commit

github.com/BioJulia/GFF3.jl - df54c5b1ebd83679687fc7270fcb98d86fabee45 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/BigBed.jl - cfb60c1303e255b2d3f2af5fd0bbf5e682258be3 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

github.com/BioJulia/BigBed.jl - 670553a1bfa7bf0b746e5f53219f0d7bc658ce00 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add generated files

github.com/BioJulia/BigWig.jl - fdefe457db3ffd51b8efd33e9055cbc4601ad236 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

github.com/BioJulia/BigWig.jl - 780941b51aab6cd6327c37adb0f21311c0436385 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/BigWig.jl - 118ad5934a224a640263c7c5b1ea876ce0a46611 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Initial commit

github.com/BioJulia/BigWig.jl - 48f8b814bcbe651f282621a0047aa3fcb5b9c4f6 authored over 4 years ago by Ciarán O'Mara <[email protected]>
rewrite of missing()

And updating docs to reflect changes.
Absolutely breaks plot_missing(), but that needs to be rew...

github.com/BioJulia/PopGen.jl_archive - ef9bb111427bfbfc0860e7394abd75c8c19e4b0b authored over 4 years ago by Pavel V. Dimens <[email protected]>
rewrite of missing()

And updating docs to reflect changes.
Absolutely breaks plot_missing(), but that needs to be rew...

github.com/BioJulia/PopGen.jl - ef9bb111427bfbfc0860e7394abd75c8c19e4b0b authored over 4 years ago by Pavel V. Dimens <[email protected]>
Add BioJulia registry and drop support for older versions of Julia

- Drop versions of Julia incompatible with custom registries.
- CI preparation for BioJulia regi...

github.com/BioJulia/GenomicFeatures.jl - 713f9ba1e328c9faf5207311560e709376d3b07d authored over 4 years ago by Ciarán O'Mara <[email protected]>
Remove reference to GFF3

This detail would be included in the documentation of the GFF3 package.

github.com/BioJulia/GenomicFeatures.jl - e022a5569f09f8afe55015460a9eb9f9c8ced4a9 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add entries to change log

github.com/BioJulia/GenomicFeatures.jl - 35df83630324451f79f21010c8e5e35ca2837f39 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Migrate from BioCore to BioGenerics

github.com/BioJulia/GenomicFeatures.jl - 5952f8927804b213d0d45453acacd56bbeb458d6 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Temporarily remove Interval Streams documentation

github.com/BioJulia/GenomicFeatures.jl - 92158d7e33d7b6de0eba4100d7da7917122e41ef authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add links to BioJulia packages

github.com/BioJulia/GenomicFeatures.jl - 9bbb9b021f18f7e2e52474d081336988df13f451 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Remove IO from documentation

github.com/BioJulia/GenomicFeatures.jl - e376570837a5c2a8adffbbf9e241cd8120c8fb7b authored over 4 years ago by Ciarán O'Mara <[email protected]>
Remove unused function

github.com/BioJulia/GenomicFeatures.jl - b4194adee5084c46bf65bd2211c1c06269b368f1 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Extract parsers

- Removes all IO submodules.
- Prunes Project.toml

github.com/BioJulia/GenomicFeatures.jl - 365b9f19c6195b9cd35e295e956bc5bb07f97442 authored over 4 years ago by Ciarán O'Mara <[email protected]>
SIMD reverse!

github.com/BioJulia/BioSequences.jl - 8d791c00e69ce6b0e80674d0075aed3ce80afd6e authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
fix nancycats data + early het fix

github.com/BioJulia/PopGen.jl_archive - cfa37313110fa375c7a3c4a55fba886af8a183bf authored over 4 years ago by Pavel <[email protected]>
fix nancycats data + early het fix

github.com/BioJulia/PopGen.jl - cfa37313110fa375c7a3c4a55fba886af8a183bf authored over 4 years ago by Pavel <[email protected]>
Faster reverse and reverse complement

github.com/BioJulia/BioSequences.jl - ee06cfcce5fa08572ed970ff48bc3d49134cd155 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Migrate from BioCore to BioGenerics

github.com/BioJulia/BioAlignments.jl - 4af228abea47a20a5b0fb9e1bbe2aad9ec2a4901 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add Change log entries

github.com/BioJulia/BioAlignments.jl - e918d5d8cae805ecc048b799e38f299446a6f0f2 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update index/README

github.com/BioJulia/BioAlignments.jl - 784741e83d7bf19b201b80024a4ff3854ba7d048 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Compatibility updates for BioSequences v2.0.0

github.com/BioJulia/BioAlignments.jl - 1b25c93ccf2367794f4b7d48ae1a7560fc4f9025 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add BioJulia registry and drop support for older versions of Julia

Pkg's registry handling requires at least Julia 1.1.

github.com/BioJulia/BioAlignments.jl - 26e081b96a81e387ee531ddda7157c6ef4453fc6 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add generated files

github.com/BioJulia/BigBed.jl - cc06908a86f27b0e7ecce8e3b87019bd2eb3caf8 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Initial commit

github.com/BioJulia/BigBed.jl - 08e302688ffb7f3345db3c0eac8482f1386b0d38 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

github.com/BioJulia/BED.jl - 542dbe80c42299cfd1e1cf464064a4d1464cc765 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Initial commit

github.com/BioJulia/BED.jl - 328d533bcd67638efe032e95d1ed0e22a75ecfea authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add generated files

github.com/BioJulia/BED.jl - 6f2c5e08ddab579ebfbb6d9ef44e2ac1f7dbe8e0 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/BED.jl - 49a5169cdcefbf64cf88504769d0c4647ad2c01a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add .github templates

github.com/BioJulia/Indexes.jl - 72e3e1494d6bd24b51267633962e043410e06c72 authored over 4 years ago by Ciarán O'Mara <[email protected]>
deps and module fixes

github.com/BioJulia/PopGen.jl - 77da1ba2ae0ec1052e8061869319b3e64f85ade7 authored over 4 years ago by Pavel <[email protected]>
deps and module fixes

github.com/BioJulia/PopGen.jl_archive - 77da1ba2ae0ec1052e8061869319b3e64f85ade7 authored over 4 years ago by Pavel <[email protected]>
update dependencies

github.com/BioJulia/PopGen.jl - 0c853457a18efdadda7b154618951c3a8e4a9a0c authored over 4 years ago by Pavel <[email protected]>
update dependencies

github.com/BioJulia/PopGen.jl_archive - 0c853457a18efdadda7b154618951c3a8e4a9a0c authored over 4 years ago by Pavel <[email protected]>
fix bcf() error, minor populations() update

github.com/BioJulia/PopGen.jl - b7b77d6150fdcf69240354e5cdafad7797ef4919 authored over 4 years ago by Pavel <[email protected]>
fix bcf() error, minor populations() update

github.com/BioJulia/PopGen.jl_archive - b7b77d6150fdcf69240354e5cdafad7797ef4919 authored over 4 years ago by Pavel <[email protected]>
fix broken het function

github.com/BioJulia/PopGen.jl_archive - bad29d8122df1028d995bbaf2e67b2c2e86539ea authored over 4 years ago by Pavel <[email protected]>
fix broken het function

github.com/BioJulia/PopGen.jl - bad29d8122df1028d995bbaf2e67b2c2e86539ea authored over 4 years ago by Pavel <[email protected]>
Merge branch 'master' into dev

github.com/BioJulia/PopGen.jl - cc36574692e8f1319d9ca3e4fadbad08cb024991 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'master' into dev

github.com/BioJulia/PopGen.jl_archive - cc36574692e8f1319d9ca3e4fadbad08cb024991 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update mkdocs.yml

github.com/BioJulia/PopGen.jl_archive - a3304a6d7ae0cfbdaec24379847b86bce21672b9 authored over 4 years ago by Pavel <[email protected]>
Update mkdocs.yml

github.com/BioJulia/PopGen.jl - a3304a6d7ae0cfbdaec24379847b86bce21672b9 authored over 4 years ago by Pavel <[email protected]>
refine populations()

github.com/BioJulia/PopGen.jl_archive - 99ce4c2b22b57561a2adcbd34d8acd1dc0e68275 authored over 4 years ago by Pavel <[email protected]>
refine populations()

github.com/BioJulia/PopGen.jl - 99ce4c2b22b57561a2adcbd34d8acd1dc0e68275 authored over 4 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl - ea439ecc0edbf298a4c52347c883ba910985a8c5 authored over 4 years ago by Pavel <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl_archive - ea439ecc0edbf298a4c52347c883ba910985a8c5 authored over 4 years ago by Pavel <[email protected]>
Update community.md

github.com/BioJulia/PopGen.jl - 46cca32ed333f752a5a6a81beb6e507933e1c1ab authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update community.md

github.com/BioJulia/PopGen.jl_archive - 46cca32ed333f752a5a6a81beb6e507933e1c1ab authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update community.md

github.com/BioJulia/PopGen.jl_archive - 17ca261913f61914ec172d6d3f22ef4aa02bd8af authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update community.md

github.com/BioJulia/PopGen.jl - 17ca261913f61914ec172d6d3f22ef4aa02bd8af authored over 4 years ago by Pavel V. Dimens <[email protected]>
Seq-Lang post update

github.com/BioJulia/biojulia.github.io - d4c5f6da470147703b078804e075a530b17bae31 authored over 4 years ago by Ben J. Ward <[email protected]>
Update mkdocs.yml

github.com/BioJulia/PopGen.jl - e4f4d4059bad79d8b5aae5891c6236b64d493626 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update mkdocs.yml

github.com/BioJulia/PopGen.jl_archive - e4f4d4059bad79d8b5aae5891c6236b64d493626 authored over 4 years ago by Pavel V. Dimens <[email protected]>