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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

finish Manipulate.jl conversion to DataFrames

github.com/BioJulia/PopGen.jl_archive - 1ae0215800f64fa6fc4e34d30fbb50d25a063a03 authored over 4 years ago by Pavel Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl_archive - 74ebfaa5734d020352cacf9491f44497a006574f authored over 4 years ago by Pavel Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl - 74ebfaa5734d020352cacf9491f44497a006574f authored over 4 years ago by Pavel Dimens <[email protected]>
Fix diff regex

github.com/BioJulia/Automa.jl - 47c28726ce07b34a80e29b9963233efa88908f65 authored over 4 years ago by Jakob Nissen <[email protected]>
Fix edge cases and add tests

github.com/BioJulia/Automa.jl - 74e6405b23c6f182a0c97d97118e00eacf0fe6a0 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #1 from BioJulia/compathelper/new_version/2020-05-25-18-08-21-109-460475763

CompatHelper: add new compat entry for "AbstractPlotting" at version "0.11"

github.com/BioJulia/KmerAnalysisMakie.jl - cb277b4a5384926927309bf48e320954638dd1f4 authored over 4 years ago by Ben J. Ward <[email protected]>
Add comments to ambfix

github.com/BioJulia/Automa.jl - b97d9913f0bb4f19e60381a681827e753cc6ae4d authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Initial ambiguity fix

github.com/BioJulia/Automa.jl - 9fe702b3bc78ab2c73247cbc29eae5641c189820 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
CompatHelper: add new compat entry for "AbstractPlotting" at version "0.11"

github.com/BioJulia/KmerAnalysisMakie.jl - 610d46c447316cbb52481e8fe6e078916636ed33 authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Add a slew of project files and initial source code

github.com/BioJulia/KmerAnalysisMakie.jl - fed588741574bf2250a75f020f009ba0f35be9b2 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove reference to biojuliaregistry in CI

github.com/BioJulia/SubstitutionModels.jl - 7222ff50f395109b09e1466e394fa1f55e0d3c56 authored over 4 years ago by Justin Angevaare <[email protected]>
Remove MicrobiomePlots

github.com/BioJulia/BioJuliaRegistry - c026e612d075c7c70f8bdb24013ecf50ace8119b authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup tagbot

github.com/BioJulia/KmerAnalysis.jl - 2199c115ce7419701e9c80d20ac3fc967dc7ea44 authored over 4 years ago by Ben J. Ward <[email protected]>
Initial commit

github.com/BioJulia/KmerAnalysisMakie.jl - 10bde93bdf7d2c0bd8e3ce51d2a1a465cb4e05ae authored over 4 years ago by Ben J. Ward <[email protected]>
Finalise very first version

github.com/BioJulia/KmerAnalysis.jl - 05ba76b9621714a3202849fa6f59f507619be57f authored over 4 years ago by Ben J. Ward <[email protected]>
Remove Microbiome

github.com/BioJulia/BioJuliaRegistry - 8b18064b75da9a6f7918e295c6c72102d8f9607e authored over 4 years ago by Ben J. Ward <[email protected]>
Update website

github.com/BioJulia/biojulia.github.io - e409b56843c5e2e2610387ee7811ea1134b0d5f9 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove all remaining 'B' packages

github.com/BioJulia/BioJuliaRegistry - cf0bd6afd325667fdbeda1970b797ba47a47af58 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove GenomicFeatures, GenomicVectors, and GFF3

github.com/BioJulia/BioJuliaRegistry - ab41b42f31a5039b93e4deb0bfac852990949337 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove Indexes

github.com/BioJulia/BioJuliaRegistry - fae8854aea556772b4d4203b24e2d32bb8709a90 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove XAM

github.com/BioJulia/BioJuliaRegistry - bcf91fbe68bd5d2cb241a84c8710e965d4f9a257 authored over 4 years ago by Ben J. Ward <[email protected]>
Update testing

github.com/BioJulia/GenomeGraphs.jl - 6ac297402684ab9e31e8b4c1a2ad7556fb4a9957 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge remote-tracking branch 'origin/master'

github.com/BioJulia/GenomeGraphs.jl - 5868fdcc3f0e7f2ea1a4bd10fc0bc9ffe7779b6d authored over 4 years ago by Ben J. Ward <[email protected]>
Update install instructions

github.com/BioJulia/GenomeGraphs.jl - 7f5457accc21ecf3ca959aaf788bbcaeda71fc00 authored over 4 years ago by Ben J. Ward <[email protected]>
Update installation instructions

github.com/BioJulia/TwoBit.jl - 772816ece736799304276564f3ba5635c94d545d authored over 4 years ago by Ben J. Ward <[email protected]>
Update index.md

github.com/BioJulia/ReadDatastores.jl - 1f99623027d919f4011170fd9ab87de572fdbd3b authored over 4 years ago by Ben J. Ward <[email protected]>
Update README.md

github.com/BioJulia/ReadDatastores.jl - 9fbf8e93f949971bfd90ecd00089d534dafcb138 authored over 4 years ago by Ben J. Ward <[email protected]>
Update docs

github.com/BioJulia/FASTX.jl - 9a5de4d57060984afd7f9bcb57d03bfe0ca783fb authored over 4 years ago by Ben J. Ward <[email protected]>
Remove Twobit

github.com/BioJulia/BioJuliaRegistry - 4b7583453fac7622f3243b25c1ba6b662f797689 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove Pseudoseq

github.com/BioJulia/BioJuliaRegistry - 3a5ab8f1283435d5b534a00d906cfb78ec7de70e authored over 4 years ago by Ben J. Ward <[email protected]>
Remove GenomeGraphs

github.com/BioJulia/BioJuliaRegistry - 9ec76437e856e7e3391afa69efa6120132247564 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove ReadDatastores

github.com/BioJulia/BioJuliaRegistry - f4f5ece3cc47f3d53b14a5fc24298caaab6fc5cf authored over 4 years ago by Ben J. Ward <[email protected]>
Remove FASTX

github.com/BioJulia/BioJuliaRegistry - b25e4ac904b604750668fe170fd3b1dc0dd07449 authored over 4 years ago by Ben J. Ward <[email protected]>
Update README.md

github.com/BioJulia/FASTX.jl - 738619d570927252febd30329dfbc5be5298d082 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove BioSequences

github.com/BioJulia/BioJuliaRegistry - f849e4fbeafca26770d1201d3a74bf3aa4024ed7 authored over 4 years ago by Ben J. Ward <[email protected]>
Update README.md

github.com/BioJulia/BioGenerics.jl - 59bda196788a4f4a7d52b0946d93fe993fb1a357 authored over 4 years ago by Ben J. Ward <[email protected]>
Update index.md

github.com/BioJulia/BioSequences.jl - 96c0bbfb64980a8c5a5ee684a6a11acff7d057a8 authored over 4 years ago by Ben J. Ward <[email protected]>
Update README.md

github.com/BioJulia/BioSequences.jl - b33f6555d18302a0e954fde5040c646260fb37bf authored over 4 years ago by Ben J. Ward <[email protected]>
Update TagBot.yml

github.com/BioJulia/BioSequences.jl - 3323c185bd82678272813074edde704bcd978bea authored over 4 years ago by Ben J. Ward <[email protected]>
Remove BioGenerics

github.com/BioJulia/BioJuliaRegistry - 3bc8c7d78ad278c42423a29d32fcd3e91056b8f9 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 7e06779527ea95a3bbbfd4fb10a465664d95ea56 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'hotfix/eachoverlap'

github.com/BioJulia/GenomicFeatures.jl - b99be3f27849f4c07545f10c1deff1d310989632 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add changelog entries and increment version

github.com/BioJulia/GenomicFeatures.jl - 83002657c9ac7f4d5694d1cb213e1934d8a24249 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Correct non-overlapping query

github.com/BioJulia/GenomicFeatures.jl - c35a6559fbd8dbb857884ef9a863fe52f3181364 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 9fc0551497579c738b343e72f677a05aebd62a80 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v2.0.1'

github.com/BioJulia/GenomicFeatures.jl - 5104b11e442e044ad8c32b0e1b713504bacea834 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add entries to change log

github.com/BioJulia/GenomicFeatures.jl - 57b9561aae9f75eeeca80fd43e0246484a0b78aa authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - 85558c4542ed92a0022c8bac97e472c0c63976fd authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update latest documentation link

github.com/BioJulia/GenomicFeatures.jl - d3c0c18b31be2da8f1c96060131fb7411fc3eb0c authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update documentation workflow

github.com/BioJulia/GenomicFeatures.jl - 1943f1d6358f6f077b3e410cb9a4b2b4c7cc2f50 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Change subheading

github.com/BioJulia/GenomicFeatures.jl - 0a9484e0a19b3af22896d6d772dc8de84e198c8d authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add documentation badge

github.com/BioJulia/GenomicFeatures.jl - 583ac07bf9e02ad7f0f84d4d3dc2b28f6a9f0648 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Clarify origin of AbstractInterval

github.com/BioJulia/GenomicFeatures.jl - 42d5b34b6ba16d84dfdbb225bb97b06cb2836c96 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Use UnitTests workflow

github.com/BioJulia/GenomicFeatures.jl - 3498d6f04213950148707f19d9293868a274f9be authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update lifecycle status

github.com/BioJulia/GenomicFeatures.jl - ba049fdf16162717aa3cbf52c841e1c330ddc849 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Minor documentation tweaks

github.com/BioJulia/GenomicFeatures.jl - ef8380ee0f63ed3c6fb933a56939929a5879e62e authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CompatHelper workflow

github.com/BioJulia/GenomicFeatures.jl - b4609599f463c42278727c9dcbbcf5bb5e5ca51b authored over 4 years ago by Ciarán O'Mara <[email protected]>
Correct change log entries

github.com/BioJulia/GenomicFeatures.jl - 7cd623465fa0a2b4a419cba71e06c6b6828e637c authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v2.0.0'

github.com/BioJulia/GenomicFeatures.jl - 28f28a8f2a15fee7f19185f063f0f771e4a3de95 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - 4a95715904f3af1aefd18e95ddaf78b60b5b52f0 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Rename LICENSE

github.com/BioJulia/GenomicFeatures.jl - d97ddb36f93e8e091f60be531ee1f4b647b0bb12 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Wrap test sets

github.com/BioJulia/GenomicFeatures.jl - a99c0cc4dba4cea71da8f3caa9daba27528130db authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update readme

github.com/BioJulia/GenomicFeatures.jl - 90cbc27c7489c68948d423abffa1528fc7bb1a69 authored over 4 years ago by Ben J. Ward <[email protected]>
Edit manual index page

github.com/BioJulia/GenomicFeatures.jl - b319f6f77778aef05277a37ac38e81e07831a236 authored over 4 years ago by Ben J. Ward <[email protected]>
Add TagBot, update logo

github.com/BioJulia/GenomicFeatures.jl - c9776ccfdb6bda2a9d53858154302ca42e0f3c9e authored over 4 years ago by Ben J. Ward <[email protected]>
Generic constructor conversion tests

github.com/BioJulia/GenomicFeatures.jl - 75d869830b598d864e7da7c065fbc6d284febc6a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Generic IntervalCollection constructor

github.com/BioJulia/GenomicFeatures.jl - 31dd794df38577fa0370ac8963336e2c4917ee1f authored over 4 years ago by Ciarán O'Mara <[email protected]>
Generic Interval constructor

github.com/BioJulia/GenomicFeatures.jl - aaa7e8912e6cf28dffe7298e678ef408bbdfcb77 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Minor documentation tweaks/corrections

github.com/BioJulia/GenomicFeatures.jl - 8d0a82d3506d7a5b38d6c936a57c409f17b3719a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add entries to change log

github.com/BioJulia/GenomicFeatures.jl - 41770b42177fdde260f5c93c84be912c0f678186 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - 6674e992708447ef8a15f5cd7ff9911634808e54 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Remove FormatSpecimens

github.com/BioJulia/BioJuliaRegistry - b4246bd50ffa2319ff978b103470888efb0db502 authored over 4 years ago by Ben J. Ward <[email protected]>
Send BioSymbols to General (#76)

* Send BioSymbols to General

* fixup

github.com/BioJulia/BioJuliaRegistry - ac3172d3d30ff1743a26f9e309b6f9ce82cc04e5 authored over 4 years ago by Ben J. Ward <[email protected]>
Remove old installation instructions

github.com/BioJulia/BioSymbols.jl - 824104c7a35ac52197affd9d0f4f4f19093b88c4 authored over 4 years ago by Ben J. Ward <[email protected]>
Install tagbot

github.com/BioJulia/BioSymbols.jl - 3a228158f105393b80b21650d69ad2243fa36268 authored over 4 years ago by Ben J. Ward <[email protected]>
Add compat for TranscodingStreams

github.com/BioJulia/BioGenerics.jl - 43fe762e9c992796cbb7b1abbf091395f21a0c84 authored over 4 years ago by Ben J. Ward <[email protected]>
Update kmer counter API, add spectra peak finding, and count projection

github.com/BioJulia/KmerAnalysis.jl - ccd1b4720f65138d545f8e5816dd260466ccb449 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl_archive - ce94f5e02ba248a43b4e3e793814ba27d7b5724c authored over 4 years ago by Pavel Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl - ce94f5e02ba248a43b4e3e793814ba27d7b5724c authored over 4 years ago by Pavel Dimens <[email protected]>
fix conversion math

github.com/BioJulia/PopGen.jl - 262f1ddf2ce7887e24ce46e78f34a70768dd1237 authored over 4 years ago by Pavel Dimens <[email protected]>
fix conversion math

github.com/BioJulia/PopGen.jl_archive - 262f1ddf2ce7887e24ce46e78f34a70768dd1237 authored over 4 years ago by Pavel Dimens <[email protected]>
New version: XAM v0.2.4 (#75)

UUID: d759349c-bcba-11e9-07c2-5b90f8f05f7c
Repo: https://github.com/BioJulia/XAM.jl.git
Tree: 16...

github.com/BioJulia/BioJuliaRegistry - dcc1c852bb70580d25c1110ca3c690460d509705 authored over 4 years ago by Helix <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/XAM.jl - 81dbf417989b4815f233a4710b663cdb9c201096 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge pull request #12 from BioJulia/hotfix/iterate

hotfix/iterate

github.com/BioJulia/XAM.jl - 551a5906c5593e3d1d1a4011f389cd319a14e12a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Correct not found check

github.com/BioJulia/XAM.jl - 8b7a2ecc2b80ca7717b65d1489c99f50a0bf0d10 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/XAM.jl - cc183115399e87bdf4709d29d91bdf2da23e1414 authored over 4 years ago by Ciarán O'Mara <[email protected]>
New version: GenomicFeatures v2.0.2 (#74)

UUID: 899a7d2d-5c61-547b-bef9-6698a8d05446
Repo: https://github.com/BioJulia/GenomicFeatures.jl....

github.com/BioJulia/BioJuliaRegistry - 8e1a9b1e0fdac770e26c727a320c9a356f45fb1a authored over 4 years ago by Helix <[email protected]>
New version: GenomicFeatures v2.0.1 (#73)

UUID: 899a7d2d-5c61-547b-bef9-6698a8d05446
Repo: https://github.com/BioJulia/GenomicFeatures.jl....

github.com/BioJulia/BioJuliaRegistry - b61dc1a66d6bae2d61e9871f789aa7cac2890c65 authored over 4 years ago by Helix <[email protected]>
extend convert_coordinates for cardinal letters

github.com/BioJulia/PopGen.jl - f130913446b3111a88e08f2d765af5301afef4b3 authored over 4 years ago by Pavel Dimens <[email protected]>
extend convert_coordinates for cardinal letters

github.com/BioJulia/PopGen.jl_archive - f130913446b3111a88e08f2d765af5301afef4b3 authored over 4 years ago by Pavel Dimens <[email protected]>
Update Manipulate.jl

github.com/BioJulia/PopGen.jl_archive - 282b9407642b8c2e024253278494410698612ab6 authored over 4 years ago by Pavel Dimens <[email protected]>
Update Manipulate.jl

github.com/BioJulia/PopGen.jl - 282b9407642b8c2e024253278494410698612ab6 authored over 4 years ago by Pavel Dimens <[email protected]>
Delete tabletesting.jl

github.com/BioJulia/PopGen.jl - cf9fc0f965aa61b6dbef59859991b23cd93f9dd9 authored over 4 years ago by Pavel Dimens <[email protected]>
Delete tabletesting.jl

github.com/BioJulia/PopGen.jl_archive - cf9fc0f965aa61b6dbef59859991b23cd93f9dd9 authored over 4 years ago by Pavel Dimens <[email protected]>
begin updating manipulate.jl

github.com/BioJulia/PopGen.jl_archive - 37d2f0fe9dcd6cccc7fdaa6ed59e18531543464a authored over 4 years ago by Pavel Dimens <[email protected]>
begin updating manipulate.jl

github.com/BioJulia/PopGen.jl - 37d2f0fe9dcd6cccc7fdaa6ed59e18531543464a authored over 4 years ago by Pavel Dimens <[email protected]>
replace datasets with .jld2 file

github.com/BioJulia/PopGen.jl - 0b6f32bcdc7babcd4af710cf90376161394da5d2 authored over 4 years ago by Pavel Dimens <[email protected]>
replace datasets with .jld2 file

github.com/BioJulia/PopGen.jl_archive - 0b6f32bcdc7babcd4af710cf90376161394da5d2 authored over 4 years ago by Pavel Dimens <[email protected]>
fix and optimize genepop and determinemarkers

And make summary => Base.show

github.com/BioJulia/PopGen.jl_archive - 17846109bce03acd034906be671dd278597ed353 authored over 4 years ago by Pavel Dimens <[email protected]>
fix and optimize genepop and determinemarkers

And make summary => Base.show

github.com/BioJulia/PopGen.jl - 17846109bce03acd034906be671dd278597ed353 authored over 4 years ago by Pavel Dimens <[email protected]>