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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

CompatHelper: add new compat entry for "Observables" at version "0.3"

github.com/BioJulia/KmerAnalysisMakie.jl - a5a4956dde6d230b3ce5be4c0f360a924e421cef authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Merge branch 'master' of github.com:BioJulia/KmerAnalysisMakie.jl

github.com/BioJulia/KmerAnalysisMakie.jl - d52fdeaec1d81cb1e77fe23beb3f658bf970998c authored over 4 years ago by Ben J. Ward <[email protected]>
Add Observables dependency

github.com/BioJulia/KmerAnalysisMakie.jl - 1f2408676aa9e38b3c9ae4c5e594adeb5689615e authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - 2b22af6f088ec86a6d67297da43307de94bc2593 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup bounds checking

github.com/BioJulia/KmerAnalysis.jl - 1da8271996ae1283c4e23d6b74df8d261c74c0aa authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - b5faab270ad6757e6097235876fbd9901e154732 authored over 4 years ago by Ben J. Ward <[email protected]>
Update KmerFrequencySpectra.jl

github.com/BioJulia/KmerAnalysis.jl - ff33ca3deb99ed622cc71768bb23291e0a1b7300 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - d0c241297d4345d9688c6696c1eb556b2286b419 authored over 4 years ago by Ben J. Ward <[email protected]>
Fix bug in 1D spectra building

github.com/BioJulia/KmerAnalysis.jl - 63c01d14eb3bf767e9e0e23163974985873a723d authored over 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #5 from BioJulia/compathelper/new_version/2020-06-27-00-17-41-981-1682111129

CompatHelper: bump compat for "KmerAnalysis" to "0.4"

github.com/BioJulia/KmerAnalysisMakie.jl - 45b1ffb3b387c46ebc4197719ee664631460be89 authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: bump compat for "KmerAnalysis" to "0.4"

github.com/BioJulia/KmerAnalysisMakie.jl - 4a3b7c01f7023d70ba29be43819c621cde0bf5ef authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - 3ccf4d2cbec1400df1c31e2e527b1ea86bdf0890 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge branch 'master' of github.com:BioJulia/KmerAnalysis.jl

github.com/BioJulia/KmerAnalysis.jl - c624a4fb099e12b87788f8493ea9bf9e40c07cbb authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup 1D spectra constructor

github.com/BioJulia/KmerAnalysis.jl - 415952ee3f0d848a05922c2dae3bfab3d9eea935 authored over 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #4 from BioJulia/compathelper/new_version/2020-06-26-18-09-49-843-1535701496

CompatHelper: bump compat for "KmerAnalysis" to "0.3"

github.com/BioJulia/KmerAnalysisMakie.jl - f60cc612c47a8989f6eeb674f1ebf2020dd16c9d authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: bump compat for "KmerAnalysis" to "0.3"

github.com/BioJulia/KmerAnalysisMakie.jl - 8117983c0d332437d61ac904472989d0dfbc613e authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - 4a91fc8dd1c28216b3d37b2f8bfef5b925b23ee6 authored over 4 years ago by Ben J. Ward <[email protected]>
Benjward/backwards compat (#5)

* Update Project.toml

* Create UnitTesting.yml

* Delete .travis.yml

* Delete Project.to...

github.com/BioJulia/KmerAnalysis.jl - b3e4b588ca66dbe43aa01433a655b3876a8eb403 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/BioSequences.jl - 93d9462a73a4c156b7069705d0441828dcd2663f authored over 4 years ago by Ben J. Ward <[email protected]>
hotfix for reverse_complementing a slice of a longseq (#111)

* hotfix for reverse_complementing a slice of a longseq

* Implement shallow copy fix proposed...

github.com/BioJulia/BioSequences.jl - 312e27434e68f1db6b429466b29877323c12ea1c authored over 4 years ago by cjprybol <[email protected]>
Merge branch 'release/v0.2.5'

github.com/BioJulia/XAM.jl - dfa5a3217f67f7efbdb41770cb73f65edb6c922d authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/XAM.jl - b97c97e90fb7660f5e9dc5958b8bfcd84b941c98 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/XAM.jl - bde477d54fe8d6d5d8f5bbcc158b7af3f02bacd2 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Simplify use of `appendfrom!`

github.com/BioJulia/XAM.jl - 946068b2f3d2e907ff5eeec1f77e49907aa32f1a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Use `copyto!`

https://github.com/BioJulia/BioSequences.jl/pull/95

github.com/BioJulia/XAM.jl - 6141d679e8f30a269e9aa2d940f38bef2a503da7 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Use @info

github.com/BioJulia/XAM.jl - 436cfd84baf799b4c35ddeee5835d94114814db0 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Move imports

github.com/BioJulia/XAM.jl - 73de48e2325443c228f69b2c7407de2be83137c5 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Isolate testsets

github.com/BioJulia/XAM.jl - 0ac352f1d24eff2d70dbda63d44e2dcb1e6a2f3c authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

- Update documentation workflow.
- Update CompatHelper workflow.
- Update TagBot workflow.
- Upd...

github.com/BioJulia/XAM.jl - eaf5c73eb5af325ac97a46c18dd3d539fa9cb41a authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add arch x64 to unit tests

github.com/BioJulia/BBI.jl - 5319ce859ab0d8bd55948f584d43d589d209d906 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add arch x64 to unit tests

github.com/BioJulia/Indexes.jl - 00a34b93e22a21a5fb699dc5fc6f6f374c1d5372 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

github.com/BioJulia/BigWig.jl - 3eb9012e78e508d7bb01354214ba3157135ff05e authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

github.com/BioJulia/BigBed.jl - 781b688f8b9c806d36c5f61c73b1f55d083ee35b authored over 4 years ago by Ciarán O'Mara <[email protected]>
Use accessors

github.com/BioJulia/BigWig.jl - e934432fa372e3b78b3c4966323ca55e0c42ced2 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Use accessors

github.com/BioJulia/BigBed.jl - e7fe1e4dcc4e5828b75b854490e6356c1e7d1326 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/Indexes.jl - d81dcdc3425ae9e4779977965e6fd9f437b6ad6e authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v0.1.1'

github.com/BioJulia/Indexes.jl - 0f07cdae829efbfdaaf55b25dd4c794debddc567 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'release/v0.2.1'

github.com/BioJulia/BBI.jl - d40d25723481d977ca6d21ebc15414bbea27d120 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/BBI.jl - 43785d73b63ab41229889c8b2004ac136d1f90aa authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add original authors

github.com/BioJulia/BBI.jl - 8b8604cac6d17c7f4f9b22dff071285448b44520 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

github.com/BioJulia/BBI.jl - 4446d6affd917410cb2a06d69d29ffa7c310e334 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/BBI.jl - b5c01133de9409d843295f27d0aafa48c71c9712 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/Indexes.jl - ff816a7ed484caa1e52d7db1d9dbedd70cfde9d3 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update CI and documentation for the general registry

github.com/BioJulia/Indexes.jl - a5707ca647bd9e0d39b9cc2c9fc67a87d0d4a253 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update .gitignore

github.com/BioJulia/BBI.jl - d2d5e113f12915fe9b72f289f35415696ca1c4aa authored over 4 years ago by Ciarán O'Mara <[email protected]>
Delete FStats_beta.jl

github.com/BioJulia/PopGen.jl - cc45dd2b0f225dcd9e8391cbf1cb7e27548dce7d authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete FStats_beta.jl

github.com/BioJulia/PopGen.jl_archive - cc45dd2b0f225dcd9e8391cbf1cb7e27548dce7d authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete BenchmarkPlots.jl

github.com/BioJulia/PopGen.jl - ae7d85f3f882cf45c256f646c130b5f7a3ece452 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Delete BenchmarkPlots.jl

github.com/BioJulia/PopGen.jl_archive - ae7d85f3f882cf45c256f646c130b5f7a3ece452 authored over 4 years ago by Pavel V. Dimens <[email protected]>
include Permutations.jl

github.com/BioJulia/PopGen.jl - b3a4e6ac0da4cea4a11e37276385e186897e08d5 authored over 4 years ago by Pavel Dimens <[email protected]>
include Permutations.jl

github.com/BioJulia/PopGen.jl_archive - b3a4e6ac0da4cea4a11e37276385e186897e08d5 authored over 4 years ago by Pavel Dimens <[email protected]>
multithreading with @spawn for Fstat permutation test

github.com/BioJulia/PopGen.jl - 49894bd7eedc99f519bcbc12a13236bc05eea28c authored over 4 years ago by Pavel Dimens <[email protected]>
multithreading with @spawn for Fstat permutation test

github.com/BioJulia/PopGen.jl_archive - 49894bd7eedc99f519bcbc12a13236bc05eea28c authored over 4 years ago by Pavel Dimens <[email protected]>
ploidy-finding feature for permute_alleles!

github.com/BioJulia/PopGen.jl - 87f0c4210e0fc567fe0e0a10ab710ae0c2444234 authored over 4 years ago by Pavel Dimens <[email protected]>
ploidy-finding feature for permute_alleles!

github.com/BioJulia/PopGen.jl_archive - 87f0c4210e0fc567fe0e0a10ab710ae0c2444234 authored over 4 years ago by Pavel Dimens <[email protected]>
overload Base.copy for a PopObj

github.com/BioJulia/PopGen.jl - 26b037ff7f3193608945fab5f4133eae74c6d061 authored over 4 years ago by Pavel Dimens <[email protected]>
overload Base.copy for a PopObj

github.com/BioJulia/PopGen.jl_archive - 26b037ff7f3193608945fab5f4133eae74c6d061 authored over 4 years ago by Pavel Dimens <[email protected]>
small fixes

github.com/BioJulia/PopGen.jl - 2ac5fbfae1fb4e94909a19f4d08d2d2840f31947 authored over 4 years ago by Pavel Dimens <[email protected]>
small fixes

github.com/BioJulia/PopGen.jl_archive - 2ac5fbfae1fb4e94909a19f4d08d2d2840f31947 authored over 4 years ago by Pavel Dimens <[email protected]>
move datasets.jl to io/

github.com/BioJulia/PopGen.jl_archive - c7edde869bab940ed2aa70b0f555aaf0539c875e authored over 4 years ago by Pavel Dimens <[email protected]>
move datasets.jl to io/

github.com/BioJulia/PopGen.jl - c7edde869bab940ed2aa70b0f555aaf0539c875e authored over 4 years ago by Pavel Dimens <[email protected]>
update fstats

github.com/BioJulia/PopGen.jl - c1abee357057721c8804006149bbf628696b863e authored over 4 years ago by Pavel Dimens <[email protected]>
update fstats

github.com/BioJulia/PopGen.jl_archive - c1abee357057721c8804006149bbf628696b863e authored over 4 years ago by Pavel Dimens <[email protected]>
fix up permute_alleles!

github.com/BioJulia/PopGen.jl - dae5e949226ae2426b7ab02252c6fcdba2a16fd3 authored over 4 years ago by Pavel Dimens <[email protected]>
fix up permute_alleles!

github.com/BioJulia/PopGen.jl_archive - dae5e949226ae2426b7ab02252c6fcdba2a16fd3 authored over 4 years ago by Pavel Dimens <[email protected]>
write permute_alleles!

github.com/BioJulia/PopGen.jl - a193de7374806b21180bf31860478d2edc35c610 authored over 4 years ago by Pavel Dimens <[email protected]>
write permute_alleles!

github.com/BioJulia/PopGen.jl_archive - a193de7374806b21180bf31860478d2edc35c610 authored over 4 years ago by Pavel Dimens <[email protected]>
merge permute_genotypes into single function

github.com/BioJulia/PopGen.jl - 259307c5d4275fe36caa397b8eeb211e02020ad9 authored over 4 years ago by Pavel Dimens <[email protected]>
merge permute_genotypes into single function

github.com/BioJulia/PopGen.jl_archive - 259307c5d4275fe36caa397b8eeb211e02020ad9 authored over 4 years ago by Pavel Dimens <[email protected]>
tweak strict_shuffle!

github.com/BioJulia/PopGen.jl - f87d42ba4bbd14010e06524279c21674ca972daf authored over 4 years ago by Pavel Dimens <[email protected]>
tweak strict_shuffle!

github.com/BioJulia/PopGen.jl_archive - f87d42ba4bbd14010e06524279c21674ca972daf authored over 4 years ago by Pavel Dimens <[email protected]>
move permutations to own file, create strict_shuffle methods

github.com/BioJulia/PopGen.jl - f7f42c05edd6da2ed88081602c18da7849f28216 authored over 4 years ago by Pavel Dimens <[email protected]>
move permutations to own file, create strict_shuffle methods

github.com/BioJulia/PopGen.jl_archive - f7f42c05edd6da2ed88081602c18da7849f28216 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'fstats' of https://github.com/pdimens/PopGen.jl into fstats

github.com/BioJulia/PopGen.jl - 596906f6591e37652feabeea1701a3d6213e8a2a authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'fstats' of https://github.com/pdimens/PopGen.jl into fstats

github.com/BioJulia/PopGen.jl_archive - 596906f6591e37652feabeea1701a3d6213e8a2a authored over 4 years ago by Pavel Dimens <[email protected]>
cleanup

github.com/BioJulia/PopGen.jl - 76d2bb313ee74e87dd2ca9af93e22dbf7efdaf21 authored over 4 years ago by Pavel Dimens <[email protected]>
cleanup

github.com/BioJulia/PopGen.jl_archive - 76d2bb313ee74e87dd2ca9af93e22dbf7efdaf21 authored over 4 years ago by Pavel Dimens <[email protected]>
Update FStats.jl

github.com/BioJulia/PopGen.jl - eb9918709ae6c068f5f461a042bddf31b208f31a authored over 4 years ago by jdselwyn <[email protected]>
Update FStats.jl

github.com/BioJulia/PopGen.jl_archive - eb9918709ae6c068f5f461a042bddf31b208f31a authored over 4 years ago by jdselwyn <[email protected]>
add early fstat permutation test

github.com/BioJulia/PopGen.jl - 0af336372f882d1871470ae52c1ec355afdfd732 authored over 4 years ago by Pavel Dimens <[email protected]>
add early fstat permutation test

github.com/BioJulia/PopGen.jl_archive - 0af336372f882d1871470ae52c1ec355afdfd732 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'release/v2.0.3'

github.com/BioJulia/GenomicFeatures.jl - 99632a32b437e32625b3df23e78ea2cc271625d7 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/GenomicFeatures.jl - d885bc9bb12ad2cdd308932cee85c084d69d761e authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add changelog entries

github.com/BioJulia/GenomicFeatures.jl - d63fea96ef95da39038b95f7979d83bb403b637d authored over 4 years ago by Ciarán O'Mara <[email protected]>
Coverage example

github.com/BioJulia/GenomicFeatures.jl - 997132f94e654077a38c29f9c97570010cb2bfcf authored over 4 years ago by Ciarán O'Mara <[email protected]>
Add docstrings, jdoctests, and references

- Strand docstrings
- IntervalCollection docstrings
- Interval docstring

github.com/BioJulia/GenomicFeatures.jl - 8a6c44c2ecbba7595f00b841cb0cf3d47bfdb9d5 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Documentation tweaks

github.com/BioJulia/GenomicFeatures.jl - b95741edb7271fb568391ee1163b2b3e34fd636f authored over 4 years ago by Ciarán O'Mara <[email protected]>
Increment version

github.com/BioJulia/GenomicFeatures.jl - 4729ada47d2568d13c96d9402ba998a308e290d6 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl - f0ee4700363969d63af862bc2f607f553a3da979 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl_archive - f0ee4700363969d63af862bc2f607f553a3da979 authored over 4 years ago by Pavel V. Dimens <[email protected]>
touch up quickstart

github.com/BioJulia/PopGen.jl - a1e29d9e445032767a872377066a98d79109b879 authored over 4 years ago by Pavel Dimens <[email protected]>
touch up quickstart

github.com/BioJulia/PopGen.jl_archive - a1e29d9e445032767a872377066a98d79109b879 authored over 4 years ago by Pavel Dimens <[email protected]>
fix what pavel broke

github.com/BioJulia/PopGen.jl - 16a3689cdb8d441536aa6df1e209d4f13d58ed98 authored over 4 years ago by Pavel Dimens <[email protected]>
fix what pavel broke

github.com/BioJulia/PopGen.jl_archive - 16a3689cdb8d441536aa6df1e209d4f13d58ed98 authored over 4 years ago by Pavel Dimens <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl - 2bba9f646faf518a01271eacccf01bf74f7752e7 authored over 4 years ago by Pavel Dimens <[email protected]>
Update PopGen.jl

github.com/BioJulia/PopGen.jl_archive - 2bba9f646faf518a01271eacccf01bf74f7752e7 authored over 4 years ago by Pavel Dimens <[email protected]>
add quickstart and module docstring

github.com/BioJulia/PopGen.jl - ab42a925ff58ca51c90f9fe4ad59a5ce45cd7bcb authored over 4 years ago by Pavel Dimens <[email protected]>
add quickstart and module docstring

github.com/BioJulia/PopGen.jl_archive - ab42a925ff58ca51c90f9fe4ad59a5ce45cd7bcb authored over 4 years ago by Pavel Dimens <[email protected]>
Update CONTRIBUTING.md

github.com/BioJulia/PopGen.jl - 55764770b30c4a0619b6a7478bd184ba909a953d authored over 4 years ago by Pavel Dimens <[email protected]>
Update CONTRIBUTING.md

github.com/BioJulia/PopGen.jl_archive - 55764770b30c4a0619b6a7478bd184ba909a953d authored over 4 years ago by Pavel Dimens <[email protected]>