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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

add workflows to gitignore

github.com/BioJulia/PopGen.jl - 84ec9785203bd006ebf4a972a43a81224b699630 authored over 4 years ago by Pavel Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - df12474d425101b9aef2ecd87a567af5d0db5e38 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - df12474d425101b9aef2ecd87a567af5d0db5e38 authored over 4 years ago by Pavel V. Dimens <[email protected]>
separate dev readme

github.com/BioJulia/PopGen.jl_archive - 5d5e6be8a96f68cdc232230569a38ebbd5fdf510 authored over 4 years ago by Pavel Dimens <[email protected]>
separate dev readme

github.com/BioJulia/PopGen.jl - 5d5e6be8a96f68cdc232230569a38ebbd5fdf510 authored over 4 years ago by Pavel Dimens <[email protected]>
Rename ci_dev to ci_dev.yml

github.com/BioJulia/PopGen.jl - b670e5fafe799e98135e8580963b7e044b466f5f authored over 4 years ago by Pavel V. Dimens <[email protected]>
Rename ci_dev to ci_dev.yml

github.com/BioJulia/PopGen.jl_archive - b670e5fafe799e98135e8580963b7e044b466f5f authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 2a1c301c73aa9762e0eda964d007116785f2be18 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 2a1c301c73aa9762e0eda964d007116785f2be18 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - f582bed2b44e977f32789fb3b4506f869b6ccc20 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - f582bed2b44e977f32789fb3b4506f869b6ccc20 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create ci_dev

github.com/BioJulia/PopGen.jl_archive - f66e5f08d120cbc7e501cc6b5e68c3e224ce32de authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create ci_dev

github.com/BioJulia/PopGen.jl - f66e5f08d120cbc7e501cc6b5e68c3e224ce32de authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update and rename ci.yml to ci_main.yml

github.com/BioJulia/PopGen.jl - 387b14310b73038ddc6fb2cbae5e35c0235a1dde authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update and rename ci.yml to ci_main.yml

github.com/BioJulia/PopGen.jl_archive - 387b14310b73038ddc6fb2cbae5e35c0235a1dde authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update ci.yml

restrict CI to main and dev branches

github.com/BioJulia/PopGen.jl_archive - 5a7d30a08d402540b5dc530e9dca709ef5fa3e1b authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update ci.yml

restrict CI to main and dev branches

github.com/BioJulia/PopGen.jl - 5a7d30a08d402540b5dc530e9dca709ef5fa3e1b authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 667cb35b1a3a9ff6bb3cc47f5c998f2fca772ccf authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 667cb35b1a3a9ff6bb3cc47f5c998f2fca772ccf authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl_archive - 3d07e743743233b7b3d67ce8e66f5408c84efba1 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGen.jl - 3d07e743743233b7b3d67ce8e66f5408c84efba1 authored over 4 years ago by Pavel V. Dimens <[email protected]>
change docs logo to white

github.com/BioJulia/PopGen.jl - d7f2bd6171f47b1e0943be0893363edd28045497 authored over 4 years ago by Pavel V. Dimens <[email protected]>
change docs logo to white

github.com/BioJulia/PopGen.jl_archive - d7f2bd6171f47b1e0943be0893363edd28045497 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update ci.yml

github.com/BioJulia/PopGen.jl_archive - f9810546ed058ce65b365fa538fa8e5c3c6c4a3a authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update ci.yml

github.com/BioJulia/PopGen.jl - f9810546ed058ce65b365fa538fa8e5c3c6c4a3a authored over 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'main' of https://github.com/pdimens/PopGen.jl into main

github.com/BioJulia/PopGen.jl - f307419b6c6c344d4d8160baf1b04c1d32f0b0d3 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'main' of https://github.com/pdimens/PopGen.jl into main

github.com/BioJulia/PopGen.jl_archive - f307419b6c6c344d4d8160baf1b04c1d32f0b0d3 authored over 4 years ago by Pavel Dimens <[email protected]>
update manipulate, trigger compat

github.com/BioJulia/PopGen.jl_archive - 51f029fdf40c02eb911f1c548a5cb1a8f9b38d64 authored over 4 years ago by Pavel Dimens <[email protected]>
update manipulate, trigger compat

github.com/BioJulia/PopGen.jl - 51f029fdf40c02eb911f1c548a5cb1a8f9b38d64 authored over 4 years ago by Pavel Dimens <[email protected]>
Update CompatHelper.yml

github.com/BioJulia/PopGen.jl - f65a3b71cd8b634ad15d0b9d5bb8827e4e1c70f8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update CompatHelper.yml

github.com/BioJulia/PopGen.jl_archive - f65a3b71cd8b634ad15d0b9d5bb8827e4e1c70f8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create ci.yml

github.com/BioJulia/PopGen.jl_archive - 4e8ed9a4cabc7ddd1543f20bf90b3e80586434b2 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create ci.yml

github.com/BioJulia/PopGen.jl - 4e8ed9a4cabc7ddd1543f20bf90b3e80586434b2 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'main' of https://github.com/pdimens/PopGen.jl into main

github.com/BioJulia/PopGen.jl - 6d71dc0554fc6bf96495ccb8ef7cc8f7d5f7a7a3 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'main' of https://github.com/pdimens/PopGen.jl into main

github.com/BioJulia/PopGen.jl_archive - 6d71dc0554fc6bf96495ccb8ef7cc8f7d5f7a7a3 authored over 4 years ago by Pavel Dimens <[email protected]>
Update CompatHelper.yml

github.com/BioJulia/PopGen.jl_archive - 825bee70bad26268cdf998a4d0fabe5147357274 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update CompatHelper.yml

github.com/BioJulia/PopGen.jl - 825bee70bad26268cdf998a4d0fabe5147357274 authored over 4 years ago by Pavel V. Dimens <[email protected]>
add secret

github.com/BioJulia/PopGen.jl - b6d30a773423d77e71e4bf87869888a4b84f96f7 authored over 4 years ago by Pavel Dimens <[email protected]>
add secret

github.com/BioJulia/PopGen.jl_archive - b6d30a773423d77e71e4bf87869888a4b84f96f7 authored over 4 years ago by Pavel Dimens <[email protected]>
restore deps for compat

github.com/BioJulia/PopGen.jl_archive - a57d9ba19864a10778e3bf7e96f39fff5ec80b9c authored over 4 years ago by Pavel Dimens <[email protected]>
restore deps for compat

github.com/BioJulia/PopGen.jl - a57d9ba19864a10778e3bf7e96f39fff5ec80b9c authored over 4 years ago by Pavel Dimens <[email protected]>
clear project toml

github.com/BioJulia/PopGen.jl - 6a10b8ddde6b5c480ac47b9561141c2b2afb1547 authored over 4 years ago by Pavel Dimens <[email protected]>
clear project toml

github.com/BioJulia/PopGen.jl_archive - 6a10b8ddde6b5c480ac47b9561141c2b2afb1547 authored over 4 years ago by Pavel Dimens <[email protected]>
update readme + version info

github.com/BioJulia/PopGen.jl_archive - 57b053108ccaa2b66a677f378308db518de68b49 authored over 4 years ago by Pavel Dimens <[email protected]>
update readme + version info

github.com/BioJulia/PopGen.jl - 57b053108ccaa2b66a677f378308db518de68b49 authored over 4 years ago by Pavel Dimens <[email protected]>
Create CompatHelper.yml

github.com/BioJulia/PopGen.jl - 726fd4763bf24d19bf87d083eabe8c4baceb53f8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create CompatHelper.yml

github.com/BioJulia/PopGen.jl_archive - 726fd4763bf24d19bf87d083eabe8c4baceb53f8 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create TagBot.yml

github.com/BioJulia/PopGen.jl_archive - 09c328f12364710ea91e7f50ff681329c89893d0 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Create TagBot.yml

github.com/BioJulia/PopGen.jl - 09c328f12364710ea91e7f50ff681329c89893d0 authored over 4 years ago by Pavel V. Dimens <[email protected]>
update export

github.com/BioJulia/PopGen.jl - e6d9c199253b277ba0891c3052f2e3ac20eab58a authored over 4 years ago by Pavel Dimens <[email protected]>
update export

github.com/BioJulia/PopGen.jl_archive - e6d9c199253b277ba0891c3052f2e3ac20eab58a authored over 4 years ago by Pavel Dimens <[email protected]>
add DataExploration.jl to module

github.com/BioJulia/PopGen.jl_archive - ce8cf5cfb57a6ed421bf5f3ed1693b87ca97240a authored over 4 years ago by Pavel Dimens <[email protected]>
add DataExploration.jl to module

github.com/BioJulia/PopGen.jl - ce8cf5cfb57a6ed421bf5f3ed1693b87ca97240a authored over 4 years ago by Pavel Dimens <[email protected]>
moved missing into DataExploration, add pw_ident

github.com/BioJulia/PopGen.jl - 0c6dd8ad3d981858c126f16be76e09732973e5ef authored over 4 years ago by Pavel Dimens <[email protected]>
moved missing into DataExploration, add pw_ident

github.com/BioJulia/PopGen.jl_archive - 0c6dd8ad3d981858c126f16be76e09732973e5ef authored over 4 years ago by Pavel Dimens <[email protected]>
change method to Base.Iterators.product

github.com/BioJulia/PopGen.jl_archive - af6ad61f727bbf5842ccdcf60385b2ac0fe9429a authored over 4 years ago by Pavel Dimens <[email protected]>
change method to Base.Iterators.product

github.com/BioJulia/PopGen.jl - af6ad61f727bbf5842ccdcf60385b2ac0fe9429a authored over 4 years ago by Pavel Dimens <[email protected]>
updated docstrings

github.com/BioJulia/PopGen.jl - 2cc7c910b52956f95c0992c84b3d56c715955a04 authored over 4 years ago by Pavel Dimens <[email protected]>
updated docstrings

github.com/BioJulia/PopGen.jl_archive - 2cc7c910b52956f95c0992c84b3d56c715955a04 authored over 4 years ago by Pavel Dimens <[email protected]>
support for 00000 missing genotypes in write funcs

github.com/BioJulia/PopGen.jl_archive - dec081180a88d9f0e5492ba0f6cf38bc4821a666 authored over 4 years ago by Pavel Dimens <[email protected]>
support for 00000 missing genotypes in write funcs

github.com/BioJulia/PopGen.jl - dec081180a88d9f0e5492ba0f6cf38bc4821a666 authored over 4 years ago by Pavel Dimens <[email protected]>
change exclude! to decide on fastest filt method

github.com/BioJulia/PopGen.jl - 44bdb93dd1d4ac7bd649b12f1140ef235d19f5de authored over 4 years ago by Pavel Dimens <[email protected]>
change exclude! to decide on fastest filt method

github.com/BioJulia/PopGen.jl_archive - 44bdb93dd1d4ac7bd649b12f1140ef235d19f5de authored over 4 years ago by Pavel Dimens <[email protected]>
Note

github.com/BioJulia/XAM.jl - 69e77a234c47a5762572bb1a6787001e35e4580e authored over 4 years ago by Ciarán O'Mara <[email protected]>
Tidy

github.com/BioJulia/XAM.jl - dce44b3f558d06cc1b9f7e425d67bc0f03d7f7b1 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'hotfix/isnextmapped'

github.com/BioJulia/XAM.jl - a51e91141fe967a920228f6e6077f7a38e0451b5 authored over 4 years ago by Ciarán O'Mara <[email protected]>
Merge branch 'master' into develop

github.com/BioJulia/XAM.jl - 149d2cd898327925cbedcd1eb6bbc6050ea5ea17 authored over 4 years ago by Ciarán O'Mara <[email protected]>
update populations and tweak exclude

github.com/BioJulia/PopGen.jl - 7b96de07c94c3b4066c0a3f878cc202f3748be51 authored over 4 years ago by Pavel Dimens <[email protected]>
update populations and tweak exclude

github.com/BioJulia/PopGen.jl_archive - 7b96de07c94c3b4066c0a3f878cc202f3748be51 authored over 4 years ago by Pavel Dimens <[email protected]>
export write_to

github.com/BioJulia/PopGen.jl_archive - 4cf3230786e0571d780e1e3f094aa01f1c68db86 authored over 4 years ago by Pavel Dimens <[email protected]>
export write_to

github.com/BioJulia/PopGen.jl - 4cf3230786e0571d780e1e3f094aa01f1c68db86 authored over 4 years ago by Pavel Dimens <[email protected]>
Correct scope

github.com/BioJulia/XAM.jl - 639b8238c7bcad70c49e26884dcd02e0c1d09850 authored over 4 years ago by Diego Alvarez <[email protected]>
Increment version

github.com/BioJulia/XAM.jl - eb11106b01be1b9e781ac3bedd4f83a40afc2898 authored over 4 years ago by Ciarán O'Mara <[email protected]>
fix @view usage

github.com/BioJulia/PopGen.jl - 88c8bb8f550be5ad256b34fd4c0e850f9826d16f authored over 4 years ago by Pavel Dimens <[email protected]>
fix @view usage

github.com/BioJulia/PopGen.jl_archive - 88c8bb8f550be5ad256b34fd4c0e850f9826d16f authored over 4 years ago by Pavel Dimens <[email protected]>
update populations! and remove DataFramesMeta dep

github.com/BioJulia/PopGen.jl_archive - 166406030023055e8cfa321e13b46ef8f11ef674 authored over 4 years ago by Pavel Dimens <[email protected]>
update populations! and remove DataFramesMeta dep

github.com/BioJulia/PopGen.jl - 166406030023055e8cfa321e13b46ef8f11ef674 authored over 4 years ago by Pavel Dimens <[email protected]>
Update GenomeGraphs to use KmerAnalysis.jl (#28)

* Add Zenodo README badge

* Delete MerTools.jl and add KmerAnalysis

* Update versions test...

github.com/BioJulia/GenomeGraphs.jl - e7f5c51bd028e477fcaae1088c2fe4644d8030f8 authored over 4 years ago by Ben J. Ward <[email protected]>
CompatHelper: bump compat for "AbstractPlotting" to "0.12"

github.com/BioJulia/KmerAnalysisMakie.jl - 37f22bf919693594f1eda3de02d3f9212e8a041c authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update Project.toml

github.com/BioJulia/KmerAnalysisMakie.jl - f98e573f5bd60c7eaef9d3348d9081fe0b579a90 authored over 4 years ago by Ben J. Ward <[email protected]>
Update spectracn.jl

github.com/BioJulia/KmerAnalysisMakie.jl - 7fb71007fb7a9197012a2bc25bf1746047dd1d75 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysisMakie.jl - 3e679f6977f2398c8ec695bbc0bcd5b3f8b071fb authored over 4 years ago by Ben J. Ward <[email protected]>
Update spectracn.jl

github.com/BioJulia/KmerAnalysisMakie.jl - bbc7ce050120de6cfc32ac6242a80ddf28faec4b authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysisMakie.jl - 1bc4e6e3955e62b6338d63c71b38cb7a2ae5ff00 authored over 4 years ago by Ben J. Ward <[email protected]>
Update KmerAnalysisMakie.jl

github.com/BioJulia/KmerAnalysisMakie.jl - 3b8cfd2e2791283f3bcf5221b016ed03ffa98d34 authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysisMakie.jl - a77e5ecc2c7230d485d928f200034034a8b21606 authored over 4 years ago by Ben J. Ward <[email protected]>
Update KmerAnalysisMakie.jl

github.com/BioJulia/KmerAnalysisMakie.jl - 12b50587432f45ba0f0bd5aeb4e6b9e91d2d176b authored over 4 years ago by Ben J. Ward <[email protected]>
Update spectracn.jl

github.com/BioJulia/KmerAnalysisMakie.jl - 6a86bd2eabcb522c1f09247df8fe9bf971487bee authored over 4 years ago by Ben J. Ward <[email protected]>
Update Project.toml

github.com/BioJulia/KmerAnalysis.jl - f8c6157c7fc16b759a261c9fd0208193465ae5f4 authored over 4 years ago by Ben J. Ward <[email protected]>
Fixup 2D kmer spectra construction

github.com/BioJulia/KmerAnalysis.jl - becd400ae44325afc6085c8826e12431c86b7805 authored over 4 years ago by Ben J. Ward <[email protected]>
Update links (#113)

github.com/BioJulia/BioSequences.jl - fd7250be20d8a56239f51d4c37637e8f34143298 authored over 4 years ago by cjprybol <[email protected]>
update docstring

github.com/BioJulia/PopGen.jl - f620f070fc815e60ab69e0b70f67b89267518075 authored over 4 years ago by Pavel Dimens <[email protected]>
update docstring

github.com/BioJulia/PopGen.jl_archive - f620f070fc815e60ab69e0b70f67b89267518075 authored over 4 years ago by Pavel Dimens <[email protected]>
update docstrings

github.com/BioJulia/PopGen.jl_archive - d822bb37607c990dbdadb99fd5041c7b6752eee7 authored over 4 years ago by Pavel Dimens <[email protected]>
update docstrings

github.com/BioJulia/PopGen.jl - d822bb37607c990dbdadb99fd5041c7b6752eee7 authored over 4 years ago by Pavel Dimens <[email protected]>
Update changelog and put @test macro in front of tests

github.com/BioJulia/BioSequences.jl - 7743fb5e00cdd1c4f67a8faaa060c319e64e6a6d authored over 4 years ago by Cameron Prybol <[email protected]>
Add an `end` range test

github.com/BioJulia/BioSequences.jl - a8339df52c975a087bf8295a0f49ff6ed2006b1b authored over 4 years ago by Cameron Prybol <[email protected]>
Cleanup module names

github.com/BioJulia/BioSequences.jl - 01ba3f8b34996945488bbcbf0795ab1894124479 authored over 4 years ago by Cameron Prybol <[email protected]>
Add slicing capabilities to mers

github.com/BioJulia/BioSequences.jl - 251c42682f51db362956dce58d741f3b55403978 authored over 4 years ago by Cameron Prybol <[email protected]>
Merge pull request #6 from BioJulia/compathelper/new_version/2020-06-27-23-06-40-867-4218975832

CompatHelper: add new compat entry for "Observables" at version "0.3"

github.com/BioJulia/KmerAnalysisMakie.jl - 226ef20267a190a84208c45e7f60030e12f5f1d8 authored over 4 years ago by Ben J. Ward <[email protected]>