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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

change relatedness/pw_iden indexing methods

github.com/BioJulia/PopGen.jl - 1044fb56029bf88df5ab6436521ef40932bc4888 authored about 4 years ago by Pavel Dimens <[email protected]>
change relatedness/pw_iden indexing methods

github.com/BioJulia/PopGen.jl_archive - 1044fb56029bf88df5ab6436521ef40932bc4888 authored about 4 years ago by Pavel Dimens <[email protected]>
method using groupeddf

github.com/BioJulia/PopGen.jl_archive - 5da3701f82570a5311754c90f36d3aa1174b9719 authored about 4 years ago by Pavel Dimens <[email protected]>
method using groupeddf

github.com/BioJulia/PopGen.jl - 5da3701f82570a5311754c90f36d3aa1174b9719 authored about 4 years ago by Pavel Dimens <[email protected]>
set snp thresh to 100

github.com/BioJulia/PopGen.jl - 73205e36be8aaa35ce6c7c255f11145ee85b1f6a authored about 4 years ago by Pavel Dimens <[email protected]>
set snp thresh to 100

github.com/BioJulia/PopGen.jl_archive - 73205e36be8aaa35ce6c7c255f11145ee85b1f6a authored about 4 years ago by Pavel Dimens <[email protected]>
add ignorerepeated = true to genepop reader

github.com/BioJulia/PopGen.jl_archive - 1b48a7c30388233f9b7c8a9f7266a1f1e62fec8b authored about 4 years ago by Pavel Dimens <[email protected]>
add ignorerepeated = true to genepop reader

github.com/BioJulia/PopGen.jl - 1b48a7c30388233f9b7c8a9f7266a1f1e62fec8b authored about 4 years ago by Pavel Dimens <[email protected]>
Improve tests

github.com/BioJulia/BioSequences.jl - edb4b04e9590a99eff51ce940242077a3420261f authored about 4 years ago by Jakob Nissen <[email protected]>
Added SeqView

github.com/BioJulia/BioSequences.jl - 60fc0d983fa9ea3e2c4d9a3d6cc5c354daeb6259 authored about 4 years ago by Jakob Nissen <[email protected]>
Fix ambiguity error on Julia 1.0

github.com/BioJulia/BioSequences.jl - d6907b6f758eb7774e7032cd46e6915ea7b41768 authored about 4 years ago by Jakob Nissen <[email protected]>
Amend docs, simplify hashing code

github.com/BioJulia/BioSequences.jl - 07890da9885f11f745c34720dccc6274986eff1a authored about 4 years ago by Jakob Nissen <[email protected]>
Simplify code further

github.com/BioJulia/BioSequences.jl - aa20e87bdc4215f6bf3afb248d2d949cec15a54c authored about 4 years ago by Jakob Nybo Nissen <[email protected]>
Update CompatHelper.yml

github.com/BioJulia/BioAlignments.jl - e4fd587642de713170fb03e65087b47541bdaf84 authored about 4 years ago by Ben J. Ward <[email protected]>
Improve LongSequence hashing

github.com/BioJulia/BioSequences.jl - 000b96eed888c4d06c218c98023252ff7ada1f40 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #112 from cjprybol/cjp-kmer-range

Implement range slices over kmers

github.com/BioJulia/BioSequences.jl - a13753f709b32cc7f7e04a11735eb90ae659b96a authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 4f11effea8d247da1b2aa3994c85e7fbc1a54084 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 4f11effea8d247da1b2aa3994c85e7fbc1a54084 authored over 4 years ago by Pavel Dimens <[email protected]>
add phase and matrix methods

github.com/BioJulia/PopGen.jl_archive - c3cdcc5f8ca9b92b77f4de2e0d9bd0686bc36bff authored over 4 years ago by Pavel Dimens <[email protected]>
add phase and matrix methods

github.com/BioJulia/PopGen.jl - c3cdcc5f8ca9b92b77f4de2e0d9bd0686bc36bff authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - dd53acf657d460596ec7a59cf05703e4a329e686 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - dd53acf657d460596ec7a59cf05703e4a329e686 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - b9b57982230fbbf39c2c32223214a2f4e356ff1a authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - b9b57982230fbbf39c2c32223214a2f4e356ff1a authored over 4 years ago by jdselwyn <[email protected]>
rm views

github.com/BioJulia/PopGen.jl - e5fca9143598954cb3869dab05495d2582eb8270 authored over 4 years ago by Pavel Dimens <[email protected]>
rm views

github.com/BioJulia/PopGen.jl_archive - e5fca9143598954cb3869dab05495d2582eb8270 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 821d4151419481ddad5b9d2dce58fde2ef8522f4 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 821d4151419481ddad5b9d2dce58fde2ef8522f4 authored over 4 years ago by Pavel Dimens <[email protected]>
simplify a_wang

github.com/BioJulia/PopGen.jl - 1203f8f4bc316c651c4aef4f728e28713c35e8de authored over 4 years ago by Pavel Dimens <[email protected]>
simplify a_wang

github.com/BioJulia/PopGen.jl_archive - 1203f8f4bc316c651c4aef4f728e28713c35e8de authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 06d250fba8c08f17d922104fefa90d8ed746d832 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 06d250fba8c08f17d922104fefa90d8ed746d832 authored over 4 years ago by jdselwyn <[email protected]>
fix loiselle

github.com/BioJulia/PopGen.jl - 434be4e570d257a8e8e4e957264c98e121b3f0f3 authored over 4 years ago by Pavel Dimens <[email protected]>
fix loiselle

github.com/BioJulia/PopGen.jl_archive - 434be4e570d257a8e8e4e957264c98e121b3f0f3 authored over 4 years ago by Pavel Dimens <[email protected]>
rearrange relatedness methods alphabetically

github.com/BioJulia/PopGen.jl_archive - 8477ec25abadb31ad30c374082c8e2e0bf4e2135 authored over 4 years ago by Pavel Dimens <[email protected]>
rearrange relatedness methods alphabetically

github.com/BioJulia/PopGen.jl - 8477ec25abadb31ad30c374082c8e2e0bf4e2135 authored over 4 years ago by Pavel Dimens <[email protected]>
fix typo in drop_monomorphic!

github.com/BioJulia/PopGen.jl - b96e95b863909fced4bbb482cbcde89982b10930 authored over 4 years ago by Pavel Dimens <[email protected]>
fix typo in drop_monomorphic!

github.com/BioJulia/PopGen.jl_archive - b96e95b863909fced4bbb482cbcde89982b10930 authored over 4 years ago by Pavel Dimens <[email protected]>
fix removal of monomorphic loci in gulfsharks

github.com/BioJulia/PopGen.jl_archive - 87997100edd784f806ac5376902d583cae8cf34f authored over 4 years ago by Pavel Dimens <[email protected]>
fix removal of monomorphic loci in gulfsharks

github.com/BioJulia/PopGen.jl - 87997100edd784f806ac5376902d583cae8cf34f authored over 4 years ago by Pavel Dimens <[email protected]>
Remove COW from LongSequence

github.com/BioJulia/BioSequences.jl - bfa1f49383e83784b5d2f29d1f26972892892896 authored over 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 08fcab3c362c726a04de0dd559d4a40273a9735e authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 08fcab3c362c726a04de0dd559d4a40273a9735e authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 5e695c3c7dc99038507821eb8d406d0a39497469 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 5e695c3c7dc99038507821eb8d406d0a39497469 authored over 4 years ago by jdselwyn <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl - e2632896976f440a5b506afd0a17d4353cba82b3 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl_archive - e2632896976f440a5b506afd0a17d4353cba82b3 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update .gitignore

github.com/BioJulia/PopGen.jl_archive - 3643d2984de1cf9a94cf80289cd70adf51b6c379 authored over 4 years ago by jdselwyn <[email protected]>
Update .gitignore

github.com/BioJulia/PopGen.jl - 3643d2984de1cf9a94cf80289cd70adf51b6c379 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 9d13708d2813045393d35f5d3bf942e87e0bf9b2 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 9d13708d2813045393d35f5d3bf942e87e0bf9b2 authored over 4 years ago by Pavel Dimens <[email protected]>
fix bootstrap

github.com/BioJulia/PopGen.jl_archive - 4c1fb60c18478a314366122c4cfc27fcdb588c92 authored over 4 years ago by Pavel Dimens <[email protected]>
fix bootstrap

github.com/BioJulia/PopGen.jl - 4c1fb60c18478a314366122c4cfc27fcdb588c92 authored over 4 years ago by Pavel Dimens <[email protected]>
add new methods

github.com/BioJulia/PopGen.jl - 6efec56f1c04b4ceaafed955cd9aa857febeb1c4 authored over 4 years ago by Pavel Dimens <[email protected]>
add new methods

github.com/BioJulia/PopGen.jl_archive - 6efec56f1c04b4ceaafed955cd9aa857febeb1c4 authored over 4 years ago by Pavel Dimens <[email protected]>
add nonmissing method

github.com/BioJulia/PopGen.jl_archive - a33f25abf2c7463be0b3e150cb0dc7a8308954ac authored over 4 years ago by Pavel Dimens <[email protected]>
add nonmissing method

github.com/BioJulia/PopGen.jl - a33f25abf2c7463be0b3e150cb0dc7a8308954ac authored over 4 years ago by Pavel Dimens <[email protected]>
rename locus => genotypes

github.com/BioJulia/PopGen.jl - d561e8ffd871aaaa575619cec83e41823e835a07 authored over 4 years ago by Pavel Dimens <[email protected]>
rename locus => genotypes

github.com/BioJulia/PopGen.jl_archive - d561e8ffd871aaaa575619cec83e41823e835a07 authored over 4 years ago by Pavel Dimens <[email protected]>
drop_monomoprhic and light touchups

github.com/BioJulia/PopGen.jl_archive - 30bbf150494b26cdb32a752ef856c6c901e92115 authored over 4 years ago by Pavel Dimens <[email protected]>
drop_monomoprhic and light touchups

github.com/BioJulia/PopGen.jl - 30bbf150494b26cdb32a752ef856c6c901e92115 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 24c10eabe2cc546d1c8f1d1e8eb0e322c6d8b9a5 authored over 4 years ago by Pavel V. Dimens <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 24c10eabe2cc546d1c8f1d1e8eb0e322c6d8b9a5 authored over 4 years ago by Pavel V. Dimens <[email protected]>
consolidate lat/long coords

github.com/BioJulia/PopGen.jl_archive - 0f1735d245f5f4a32522156c3f9bfe98aa6d4c8f authored over 4 years ago by Pavel Dimens <[email protected]>
consolidate lat/long coords

github.com/BioJulia/PopGen.jl - 0f1735d245f5f4a32522156c3f9bfe98aa6d4c8f authored over 4 years ago by Pavel Dimens <[email protected]>
simplify methods and include name checks

github.com/BioJulia/PopGen.jl - 2c9d281e0d039e7e84f98d25cb706636ccd81ba5 authored over 4 years ago by Pavel Dimens <[email protected]>
simplify methods and include name checks

github.com/BioJulia/PopGen.jl_archive - 2c9d281e0d039e7e84f98d25cb706636ccd81ba5 authored over 4 years ago by Pavel Dimens <[email protected]>
make progress bar blue

github.com/BioJulia/PopGen.jl_archive - a482cbc7adfe3e294a509494d7b96b38a7512e9c authored over 4 years ago by Pavel Dimens <[email protected]>
make progress bar blue

github.com/BioJulia/PopGen.jl - a482cbc7adfe3e294a509494d7b96b38a7512e9c authored over 4 years ago by Pavel Dimens <[email protected]>
add drop_monomorphic methods and integrate

github.com/BioJulia/PopGen.jl - e3cb0567c535f1d02863e2a4f6e7af1e3314717d authored over 4 years ago by Pavel Dimens <[email protected]>
add drop_monomorphic methods and integrate

github.com/BioJulia/PopGen.jl_archive - e3cb0567c535f1d02863e2a4f6e7af1e3314717d authored over 4 years ago by Pavel Dimens <[email protected]>
tweaks

github.com/BioJulia/PopGen.jl_archive - 4762a640340bf139c9e8ee8d61560c631bb658b2 authored over 4 years ago by Pavel Dimens <[email protected]>
tweaks

github.com/BioJulia/PopGen.jl - 4762a640340bf139c9e8ee8d61560c631bb658b2 authored over 4 years ago by Pavel Dimens <[email protected]>
add progressmeter

github.com/BioJulia/PopGen.jl - c9d2cc68a3ae13d311bbe333516aef21c7415b09 authored over 4 years ago by Pavel Dimens <[email protected]>
add progressmeter

github.com/BioJulia/PopGen.jl_archive - c9d2cc68a3ae13d311bbe333516aef21c7415b09 authored over 4 years ago by Pavel Dimens <[email protected]>
fix relatedness type signatures

github.com/BioJulia/PopGen.jl_archive - 15cacc40e5890a15f11820988cacfe0d0d594155 authored over 4 years ago by Pavel Dimens <[email protected]>
fix relatedness type signatures

github.com/BioJulia/PopGen.jl - 15cacc40e5890a15f11820988cacfe0d0d594155 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring touchup

github.com/BioJulia/PopGen.jl - 520b006546e9c3f719294ad18d64d765dbf3f871 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring touchup

github.com/BioJulia/PopGen.jl_archive - 520b006546e9c3f719294ad18d64d765dbf3f871 authored over 4 years ago by Pavel Dimens <[email protected]>
create docstring for relatedness methods

github.com/BioJulia/PopGen.jl_archive - 5326bfd5fee6ce0902ca86c8392563bb7c021ee5 authored over 4 years ago by Pavel Dimens <[email protected]>
create docstring for relatedness methods

github.com/BioJulia/PopGen.jl - 5326bfd5fee6ce0902ca86c8392563bb7c021ee5 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring fix

github.com/BioJulia/PopGen.jl - 5a00caebd1c4e8727c057b937c6d99c3e562890a authored over 4 years ago by Pavel Dimens <[email protected]>
docstring fix

github.com/BioJulia/PopGen.jl_archive - 5a00caebd1c4e8727c057b937c6d99c3e562890a authored over 4 years ago by Pavel Dimens <[email protected]>
add wrapper and exports

github.com/BioJulia/PopGen.jl_archive - 90f6e7bbdbec44b98bb76281af2711d660db7431 authored over 4 years ago by Pavel Dimens <[email protected]>
add wrapper and exports

github.com/BioJulia/PopGen.jl - 90f6e7bbdbec44b98bb76281af2711d660db7431 authored over 4 years ago by Pavel Dimens <[email protected]>
add methods for specific individuals

github.com/BioJulia/PopGen.jl - 2d55e2a6a6d37df4997d1c7404161ef2804339bf authored over 4 years ago by Pavel Dimens <[email protected]>
add methods for specific individuals

github.com/BioJulia/PopGen.jl_archive - 2d55e2a6a6d37df4997d1c7404161ef2804339bf authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 746e8d5259ee9439656faff992f753ab65461daa authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 746e8d5259ee9439656faff992f753ab65461daa authored over 4 years ago by Pavel Dimens <[email protected]>
update

github.com/BioJulia/PopGen.jl - e866e1305b9060f057be65a0cbc1546bcb2bd438 authored over 4 years ago by Pavel Dimens <[email protected]>
update

github.com/BioJulia/PopGen.jl_archive - e866e1305b9060f057be65a0cbc1546bcb2bd438 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 58a318998959702c703e18a74c7b65ee7e13c830 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 58a318998959702c703e18a74c7b65ee7e13c830 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 58377270ddc7919952ad5af151c4c64883cfbc96 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 58377270ddc7919952ad5af151c4c64883cfbc96 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - 2c454410c536c8491480ccc78b12b8b3f1636b84 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - 2c454410c536c8491480ccc78b12b8b3f1636b84 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl - c4ff7341c92d6fb431aa35f9c01a1102bc52a924 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

github.com/BioJulia/PopGen.jl_archive - c4ff7341c92d6fb431aa35f9c01a1102bc52a924 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 14619c327196453031c2873b015ccfb66b850970 authored over 4 years ago by Pavel Dimens <[email protected]>