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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

add inbreeding toggle for relatedness

github.com/BioJulia/PopGen.jl_archive - aba87f29431c5d339a0c063717cc44d8a0ad34a0 authored about 4 years ago by Pavel Dimens <[email protected]>
add deps

github.com/BioJulia/PopGen.jl - ac8373d7cbdf8f8965db1192b6506dadd85991b7 authored about 4 years ago by Pavel Dimens <[email protected]>
add deps

github.com/BioJulia/PopGen.jl_archive - ac8373d7cbdf8f8965db1192b6506dadd85991b7 authored about 4 years ago by Pavel Dimens <[email protected]>
Added readgff to docs

github.com/BioJulia/GenomicAnnotations.jl - 045112494413eda8a5b6e94784d0d03f7304dff6 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff to README

github.com/BioJulia/GenomicAnnotations.jl - e6bee3f8d3af0e5fe250300c7cc149b153512b24 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added default header

github.com/BioJulia/GenomicAnnotations.jl - e95f6258e66765f7a39b1bb7baf2d104df26c965 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

github.com/BioJulia/GenomicAnnotations.jl - 5268e54d1f2b73b8fe4101f9d592aa15b10cbfd2 authored about 4 years ago by Karl Dyrhage <[email protected]>
Merge pull request #4 from kdyrhage/parsegff

Added GFF parser/writer, which allows for converting between GBK and GFF.

github.com/BioJulia/GenomicAnnotations.jl - 7b95f03109103d28424f3770bc279eddaee9e045 authored about 4 years ago by kdyrhage <[email protected]>
updates

github.com/BioJulia/PopGen.jl - 2f0814ba80f434e59290fb2fd2a293fc73138372 authored about 4 years ago by jdselwyn <[email protected]>
updates

github.com/BioJulia/PopGen.jl_archive - 2f0814ba80f434e59290fb2fd2a293fc73138372 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'master' of https://github.com/kdyrhage/GenomicAnnotations.jl

github.com/BioJulia/GenomicAnnotations.jl - 568e7cc5ec585dc26e58e3f4e33228036d491a87 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

github.com/BioJulia/GenomicAnnotations.jl - b14809b4fb8947919329ee2fb8792c1dfbe8132a authored about 4 years ago by Karl Dyrhage <[email protected]>
Enhanced GBK<->GFF conversion

github.com/BioJulia/GenomicAnnotations.jl - f6391def75227677ac54bd514c6b1389767a336e authored about 4 years ago by Karl Dyrhage <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl - ca5d44b58a8b6a851a86b46a6d0d2b3523e40f85 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl_archive - ca5d44b58a8b6a851a86b46a6d0d2b3523e40f85 authored about 4 years ago by jdselwyn <[email protected]>
Added readgff test

github.com/BioJulia/GenomicAnnotations.jl - e9eb9155f2371650dd582606104fc9662fd5bd2f authored about 4 years ago by Karl Dyrhage <[email protected]>
Separated readgbk and readgff

github.com/BioJulia/GenomicAnnotations.jl - 0d37af4320e5164a59dff3f30e6f3659e3544f84 authored about 4 years ago by Karl Dyrhage <[email protected]>
Linkify JuliaHealth text

github.com/BioJulia/biojulia.github.io - f2d8e5772587ef59452c1e0737648cb8ffe9cdc0 authored about 4 years ago by Ben J. Ward <[email protected]>
improve BAM.quality performance

github.com/BioJulia/XAM.jl - dde235fbc8313432dc7b16f94310128074d875e4 authored about 4 years ago by Jonathan Bieler <[email protected]>
revise relatedness docstring

github.com/BioJulia/PopGen.jl - d036bf626627af727b3c9962eb9f5cefc3da66bf authored about 4 years ago by Pavel Dimens <[email protected]>
revise relatedness docstring

github.com/BioJulia/PopGen.jl_archive - d036bf626627af727b3c9962eb9f5cefc3da66bf authored about 4 years ago by Pavel Dimens <[email protected]>
add convex

github.com/BioJulia/PopGen.jl - a9e1094e6d626e53543e99abc957a4911d2dd8dc authored about 4 years ago by Pavel Dimens <[email protected]>
add convex

github.com/BioJulia/PopGen.jl_archive - a9e1094e6d626e53543e99abc957a4911d2dd8dc authored about 4 years ago by Pavel Dimens <[email protected]>
reorganize relatedness files

github.com/BioJulia/PopGen.jl_archive - e0dbc2a725668128d59763af817f5fe41606d8a8 authored about 4 years ago by Pavel Dimens <[email protected]>
reorganize relatedness files

github.com/BioJulia/PopGen.jl - e0dbc2a725668128d59763af817f5fe41606d8a8 authored about 4 years ago by Pavel Dimens <[email protected]>
drop Missings in favor of nonmissings

github.com/BioJulia/PopGen.jl - 53fe98ed805584999942ba46780f12e770bbea90 authored about 4 years ago by Pavel Dimens <[email protected]>
drop Missings in favor of nonmissings

github.com/BioJulia/PopGen.jl_archive - 53fe98ed805584999942ba46780f12e770bbea90 authored about 4 years ago by Pavel Dimens <[email protected]>
Remove LongSequence copy-on-write (#119)

* Remove COW from LongSequence

* Improve LongSequence hashing

* Simplify code further

*...

github.com/BioJulia/BioSequences.jl - c4ad650e6b3bce5e8fe54043d045b27f772b7deb authored about 4 years ago by Jakob Nybo Nissen <[email protected]>
parsimonification

github.com/BioJulia/PopGen.jl_archive - c2e4f543859aad123452c9c6b16a833882c2a1ff authored about 4 years ago by Pavel Dimens <[email protected]>
parsimonification

github.com/BioJulia/PopGen.jl - c2e4f543859aad123452c9c6b16a833882c2a1ff authored about 4 years ago by Pavel Dimens <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 800753607dec2800479600389ed3973a8eb06d29 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 800753607dec2800479600389ed3973a8eb06d29 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - b0805bac38e5701bcca0914b5c06d2b27e13a78a authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - b0805bac38e5701bcca0914b5c06d2b27e13a78a authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 3b02fb065d8704ecdf0ea2834ad235c96010a225 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 3b02fb065d8704ecdf0ea2834ad235c96010a225 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 2ae7de9f353e7eaecd0d2839cb7823ad4f753c04 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 2ae7de9f353e7eaecd0d2839cb7823ad4f753c04 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 34db10f0970ddc0b7b175dc3d98bf0ab046731aa authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 34db10f0970ddc0b7b175dc3d98bf0ab046731aa authored about 4 years ago by Pavel Dimens <[email protected]>
add faster consolidated bootstrap methods

github.com/BioJulia/PopGen.jl - f55a16b4b15aad1335e940303e7d49e03044525c authored about 4 years ago by Pavel Dimens <[email protected]>
add faster consolidated bootstrap methods

github.com/BioJulia/PopGen.jl_archive - f55a16b4b15aad1335e940303e7d49e03044525c authored about 4 years ago by Pavel Dimens <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - eb90b07a56a7db3c0f7c880a93b1d25199ba15dc authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - eb90b07a56a7db3c0f7c880a93b1d25199ba15dc authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - db24b298e6203ea15337c04c8aae50274755d7f6 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - db24b298e6203ea15337c04c8aae50274755d7f6 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 478e77bf21b5dcf25025d736c274ea2edbe31112 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 478e77bf21b5dcf25025d736c274ea2edbe31112 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 3273e04045fe55bc3576c8b53afbcebc3eda3c81 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 3273e04045fe55bc3576c8b53afbcebc3eda3c81 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - e9ff12c8d17fce3aadfcb1d85b74970f6c06c419 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - e9ff12c8d17fce3aadfcb1d85b74970f6c06c419 authored about 4 years ago by Pavel Dimens <[email protected]>
sweeping change speeding up bootstrap (incomplete)

github.com/BioJulia/PopGen.jl_archive - f2f0a5d43ebd5f06c2c436095d4b88b55047023f authored about 4 years ago by Pavel Dimens <[email protected]>
sweeping change speeding up bootstrap (incomplete)

github.com/BioJulia/PopGen.jl - f2f0a5d43ebd5f06c2c436095d4b88b55047023f authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - dd6018186251737181990bc271476c0bc890a041 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - dd6018186251737181990bc271476c0bc890a041 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 52163db7442e31c63163455db270638c815a4538 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 52163db7442e31c63163455db270638c815a4538 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 5120ad89edb77359dc102833c0084ea6b401b076 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 5120ad89edb77359dc102833c0084ea6b401b076 authored about 4 years ago by Pavel Dimens <[email protected]>
add bootstrap before/after skipmissing methods

github.com/BioJulia/PopGen.jl - 3a1adc46dc2db500b413a980570c3122819759cc authored about 4 years ago by Pavel Dimens <[email protected]>
add bootstrap before/after skipmissing methods

github.com/BioJulia/PopGen.jl_archive - 3a1adc46dc2db500b413a980570c3122819759cc authored about 4 years ago by Pavel Dimens <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 00c56fac745f995aec8a131a95c283885e7a6f0d authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 00c56fac745f995aec8a131a95c283885e7a6f0d authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 3ee35e3f111313f2b082f7c2b8d68e3947c176a6 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 3ee35e3f111313f2b082f7c2b8d68e3947c176a6 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 2492eb52ce6ab123d06255c357acf7a3e39ac03b authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 2492eb52ce6ab123d06255c357acf7a3e39ac03b authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 844bd577790e6c051d596531bb661be2f329b7bb authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 844bd577790e6c051d596531bb661be2f329b7bb authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 1f0f07b728748c36be3aa2167db28ca798e45cd8 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 1f0f07b728748c36be3aa2167db28ca798e45cd8 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - fd1ea0d0c512ab261e243c46ab7bd784238f2282 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - fd1ea0d0c512ab261e243c46ab7bd784238f2282 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - ee7054aa0eb1c2e6bfcbec3455c0e21d13949919 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - ee7054aa0eb1c2e6bfcbec3455c0e21d13949919 authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - 26cc70acd248b566a9d25e5d46746cda7486414e authored about 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - 26cc70acd248b566a9d25e5d46746cda7486414e authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - 81c1b0106a31b202a0c9b7f4075468f3fbc440e9 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - 81c1b0106a31b202a0c9b7f4075468f3fbc440e9 authored about 4 years ago by jdselwyn <[email protected]>
more fixes

github.com/BioJulia/PopGen.jl_archive - bb86fd05b93ab239e429a5e93ba243e765cbe5de authored about 4 years ago by Pavel Dimens <[email protected]>
more fixes

github.com/BioJulia/PopGen.jl - bb86fd05b93ab239e429a5e93ba243e765cbe5de authored about 4 years ago by Pavel Dimens <[email protected]>
more fixes

github.com/BioJulia/PopGen.jl_archive - 6a767db151ebd8dc429d1967f212ddef6ecf7582 authored about 4 years ago by Pavel Dimens <[email protected]>
more fixes

github.com/BioJulia/PopGen.jl - 6a767db151ebd8dc429d1967f212ddef6ecf7582 authored about 4 years ago by Pavel Dimens <[email protected]>
fixes

github.com/BioJulia/PopGen.jl_archive - 010afc40f898a51fc6c2589139e145e71283a16a authored about 4 years ago by Pavel Dimens <[email protected]>
fixes

github.com/BioJulia/PopGen.jl - 010afc40f898a51fc6c2589139e145e71283a16a authored about 4 years ago by Pavel Dimens <[email protected]>
add experimental probability states

github.com/BioJulia/PopGen.jl - 8423fdeca88d12bffd039479e8bb092da7c6b8a5 authored about 4 years ago by Pavel Dimens <[email protected]>
add experimental probability states

github.com/BioJulia/PopGen.jl_archive - 8423fdeca88d12bffd039479e8bb092da7c6b8a5 authored about 4 years ago by Pavel Dimens <[email protected]>
add inbreeding toggle

github.com/BioJulia/PopGen.jl - 526b25b61cfc9b812786a58253d3b71ca694110b authored about 4 years ago by Pavel Dimens <[email protected]>
add inbreeding toggle

github.com/BioJulia/PopGen.jl_archive - 526b25b61cfc9b812786a58253d3b71ca694110b authored about 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl - c18b8396d33206106b80a5768fd320ce8e031779 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl_archive - c18b8396d33206106b80a5768fd320ce8e031779 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl - a5b3ffc841a4c5040a2540098fbdd499cc2eee40 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl_archive - a5b3ffc841a4c5040a2540098fbdd499cc2eee40 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl_archive - 7a9ac057bd3f373f5f3ed17177e0ec37be46be75 authored about 4 years ago by jdselwyn <[email protected]>
Update RelatednessLikelihood.jl

github.com/BioJulia/PopGen.jl - 7a9ac057bd3f373f5f3ed17177e0ec37be46be75 authored about 4 years ago by jdselwyn <[email protected]>
likelihoodRelatedness

github.com/BioJulia/PopGen.jl_archive - 6e29798aa9528015331e56665684e2cb7504dd0b authored about 4 years ago by jdselwyn <[email protected]>
likelihoodRelatedness

github.com/BioJulia/PopGen.jl - 6e29798aa9528015331e56665684e2cb7504dd0b authored about 4 years ago by jdselwyn <[email protected]>
add quicker(?) bootstrap relatedness methods

github.com/BioJulia/PopGen.jl_archive - f3844c682cc124c1184fc73d282db95774865db1 authored about 4 years ago by Pavel Dimens <[email protected]>
add quicker(?) bootstrap relatedness methods

github.com/BioJulia/PopGen.jl - f3844c682cc124c1184fc73d282db95774865db1 authored about 4 years ago by Pavel Dimens <[email protected]>