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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

fix genepop writing error

github.com/BioJulia/PopGen.jl - bcef39e7363889312f02713e873e6905f3e4928f authored about 4 years ago by Pavel Dimens <[email protected]>
touchups

github.com/BioJulia/PopGen.jl - d52a293c75a05496ccb5bb57f64222678bea92e4 authored about 4 years ago by Pavel Dimens <[email protected]>
touchups

github.com/BioJulia/PopGen.jl_archive - d52a293c75a05496ccb5bb57f64222678bea92e4 authored about 4 years ago by Pavel Dimens <[email protected]>
update docs build setup

github.com/BioJulia/BioStructures.jl - 058a5d1021f2ca05fa17dfcf28aeb046e5f3a354 authored about 4 years ago by Joe Greener <[email protected]>
test on Julia v1.5

github.com/BioJulia/BioStructures.jl - ff90bb2b77ea704506272c05cc060f7ec5f162aa authored about 4 years ago by Joe Greener <[email protected]>
Merge remote-tracking branch 'origin/master'

github.com/BioJulia/KmerAnalysis.jl - b9574c5d5fb262fde628b6fe2e33025f9698bb82 authored about 4 years ago by Ben J. Ward <[email protected]>
Add functions for computing KCI

github.com/BioJulia/KmerAnalysis.jl - bfb9991307a7dad434b7f71ec481d769a6bdeee1 authored about 4 years ago by Ben J. Ward <[email protected]>
Allow construction of 1D frequency spectra just from unsigned ints

github.com/BioJulia/KmerAnalysis.jl - 12cdf51f3a57a93e3b800300e6b82001bcb75e02 authored about 4 years ago by Ben J. Ward <[email protected]>
Allow any iterable of LongSequence for constructing IndexedCounts

github.com/BioJulia/KmerAnalysis.jl - 05046d327511b56c2083dc61f4e7996f65f4e738 authored about 4 years ago by Ben J. Ward <[email protected]>
minor fixes

github.com/BioJulia/PopGen.jl - b35ac1625065e69086358700fd7f56cf3f41d9df authored about 4 years ago by Pavel Dimens <[email protected]>
minor fixes

github.com/BioJulia/PopGen.jl_archive - b35ac1625065e69086358700fd7f56cf3f41d9df authored about 4 years ago by Pavel Dimens <[email protected]>
update to correct @spawn and cooler progressbar

github.com/BioJulia/PopGen.jl_archive - 7022dffec85e10dd1c195b2688368badc8c6f528 authored about 4 years ago by Pavel Dimens <[email protected]>
update to correct @spawn and cooler progressbar

github.com/BioJulia/PopGen.jl - 7022dffec85e10dd1c195b2688368badc8c6f528 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'master' into seqview

github.com/BioJulia/BioSequences.jl - c96ae89caaf4f4742d61048173bd42b090e2fa5a authored about 4 years ago by Jakob Nybo Nissen <[email protected]>
Add documentation; improve tests

github.com/BioJulia/BioSequences.jl - 5abe69d4bc5f447efc2fc864c00508ffbdc22463 authored about 4 years ago by Jakob Nybo Nissen <[email protected]>
typo

github.com/BioJulia/PopGen.jl_archive - 20a7e9ac13a295f8c5f7890706f9524c18271ee2 authored about 4 years ago by Pavel Dimens <[email protected]>
typo

github.com/BioJulia/PopGen.jl - 20a7e9ac13a295f8c5f7890706f9524c18271ee2 authored about 4 years ago by Pavel Dimens <[email protected]>
remove dev code and fix docstring

github.com/BioJulia/PopGen.jl - dbbfec1c7cc611ae583664d6cbd6b02515407403 authored about 4 years ago by Pavel Dimens <[email protected]>
remove dev code and fix docstring

github.com/BioJulia/PopGen.jl_archive - dbbfec1c7cc611ae583664d6cbd6b02515407403 authored about 4 years ago by Pavel Dimens <[email protected]>
add simulation

github.com/BioJulia/PopGen.jl - 1db5dabd78ba76e9970f7e189f15abcc16ced272 authored about 4 years ago by Pavel Dimens <[email protected]>
add simulation

github.com/BioJulia/PopGen.jl_archive - 1db5dabd78ba76e9970f7e189f15abcc16ced272 authored about 4 years ago by Pavel Dimens <[email protected]>
remove dev text

github.com/BioJulia/PopGen.jl - 16944fd61087c2f10f6fc82448e64b607a1528ad authored about 4 years ago by Pavel Dimens <[email protected]>
remove dev text

github.com/BioJulia/PopGen.jl_archive - 16944fd61087c2f10f6fc82448e64b607a1528ad authored about 4 years ago by Pavel Dimens <[email protected]>
fix datasets (oops!)

github.com/BioJulia/PopGen.jl - 8b0a8ef0b73a038d3e08813a0eaa70abcb1af8c8 authored about 4 years ago by Pavel Dimens <[email protected]>
fix datasets (oops!)

github.com/BioJulia/PopGen.jl_archive - 8b0a8ef0b73a038d3e08813a0eaa70abcb1af8c8 authored about 4 years ago by Pavel Dimens <[email protected]>
minor docstring format error

github.com/BioJulia/PopGen.jl - 8d882e87b8626b370b53f1712f73cacb24c02496 authored about 4 years ago by Pavel Dimens <[email protected]>
minor docstring format error

github.com/BioJulia/PopGen.jl_archive - 8d882e87b8626b370b53f1712f73cacb24c02496 authored about 4 years ago by Pavel Dimens <[email protected]>
update install text

github.com/BioJulia/PopGen.jl_archive - 7fdb50593dbf402566c6cd59142c3254fa45992f authored about 4 years ago by Pavel Dimens <[email protected]>
update install text

github.com/BioJulia/PopGen.jl - 7fdb50593dbf402566c6cd59142c3254fa45992f authored about 4 years ago by Pavel Dimens <[email protected]>
update cats/sharks to use PooledArrays

github.com/BioJulia/PopGen.jl_archive - a26f92dae2a50bf5e444749d6c1806271cac2a03 authored about 4 years ago by Pavel Dimens <[email protected]>
update cats/sharks to use PooledArrays

github.com/BioJulia/PopGen.jl - a26f92dae2a50bf5e444749d6c1806271cac2a03 authored about 4 years ago by Pavel Dimens <[email protected]>
slight color change

github.com/BioJulia/PopGen.jl_archive - ae3e76228b9308abb228e6d8b90af0ae591e3aed authored about 4 years ago by Pavel Dimens <[email protected]>
slight color change

github.com/BioJulia/PopGen.jl - ae3e76228b9308abb228e6d8b90af0ae591e3aed authored about 4 years ago by Pavel Dimens <[email protected]>
fix shadows

github.com/BioJulia/PopGen.jl_archive - a22912c38dce392dcda70617a99922928e8aa344 authored about 4 years ago by Pavel Dimens <[email protected]>
fix shadows

github.com/BioJulia/PopGen.jl - a22912c38dce392dcda70617a99922928e8aa344 authored about 4 years ago by Pavel Dimens <[email protected]>
update install graphic

github.com/BioJulia/PopGen.jl_archive - c06457c5f23a82cad33071569ab0dda08f9be21c authored about 4 years ago by Pavel Dimens <[email protected]>
update install graphic

github.com/BioJulia/PopGen.jl - c06457c5f23a82cad33071569ab0dda08f9be21c authored about 4 years ago by Pavel Dimens <[email protected]>
swap CategoricalArrays for PooledArrays

github.com/BioJulia/PopGen.jl_archive - 03c87c7ab70619deefae2a0675f462e1e9778aa5 authored about 4 years ago by Pavel Dimens <[email protected]>
swap CategoricalArrays for PooledArrays

github.com/BioJulia/PopGen.jl - 03c87c7ab70619deefae2a0675f462e1e9778aa5 authored about 4 years ago by Pavel Dimens <[email protected]>
fixes for mixed ploidy

github.com/BioJulia/PopGen.jl_archive - 0e8a9bd21b8c716e400ed78ba79971bb7a4e91e9 authored about 4 years ago by Pavel Dimens <[email protected]>
fixes for mixed ploidy

github.com/BioJulia/PopGen.jl - 0e8a9bd21b8c716e400ed78ba79971bb7a4e91e9 authored about 4 years ago by Pavel Dimens <[email protected]>
Update README.md

github.com/BioJulia/SubstitutionModels.jl - dea01e2680b277bdd60694cf745ea04631f14f3c authored about 4 years ago by Justin Angevaare <[email protected]>
Update README.md

github.com/BioJulia/SubstitutionModels.jl - 757c24e9b3d819568110bc92f3bec30a8aed9e07 authored about 4 years ago by Justin Angevaare <[email protected]>
Add Project.toml

Also fixed deprecation warnings.

github.com/BioJulia/GeneticVariation.jl - 7b7fa346fd94d9cfced5d55f06786a355a940315 authored about 4 years ago by Rasmus Henningsson <[email protected]>
fix vcf reader and begin requires tests

github.com/BioJulia/PopGen.jl_archive - 4801b62f6dd013a1aa6f0f438abb4962a2b2d507 authored about 4 years ago by Pavel Dimens <[email protected]>
fix vcf reader and begin requires tests

github.com/BioJulia/PopGen.jl - 4801b62f6dd013a1aa6f0f438abb4962a2b2d507 authored about 4 years ago by Pavel Dimens <[email protected]>
CompatHelper: bump compat for "DataStructures" to "0.18"

github.com/BioJulia/GenomicFeatures.jl - 114c5172e0e8c8f9773fef6e9cfc170de5fcad82 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update CompatHelper.yml

github.com/BioJulia/SubstitutionModels.jl - 572266178d8d43236e18d32df1ad5e8f8d30673c authored about 4 years ago by Justin Angevaare <[email protected]>
Update TagBot.yml

github.com/BioJulia/SubstitutionModels.jl - 201dc901f8f88cf9c25ea76b313cfc374a924676 authored about 4 years ago by Justin Angevaare <[email protected]>
fix docstrings

github.com/BioJulia/PopGen.jl - d300e609066620cb696c7da757e692900bcdc1fe authored about 4 years ago by Pavel Dimens <[email protected]>
fix docstrings

github.com/BioJulia/PopGen.jl_archive - d300e609066620cb696c7da757e692900bcdc1fe authored about 4 years ago by Pavel Dimens <[email protected]>
rewrite of VCF/BCF

github.com/BioJulia/PopGen.jl - 69aae3e83ea91167edc586f82fc5e35c3d9282bc authored about 4 years ago by Pavel Dimens <[email protected]>
rewrite of VCF/BCF

github.com/BioJulia/PopGen.jl_archive - 69aae3e83ea91167edc586f82fc5e35c3d9282bc authored about 4 years ago by Pavel Dimens <[email protected]>
Update Project.toml

github.com/BioJulia/SubstitutionModels.jl - 2bfe5faa39034c631faa41f183ab0cd36cec1c82 authored about 4 years ago by Justin Angevaare <[email protected]>
Update .zenodo.json

github.com/BioJulia/SubstitutionModels.jl - 9eac71598d8123569b302a559de33dc914edf616 authored about 4 years ago by Justin Angevaare <[email protected]>
Create .zenodo.json

github.com/BioJulia/SubstitutionModels.jl - 2497c31e63e042e182ee3f4d737b24afd5958bfc authored about 4 years ago by Justin Angevaare <[email protected]>
Update .travis.yml

github.com/BioJulia/SubstitutionModels.jl - da4f71e1ab9390346609dc1d353623676ecc755b authored about 4 years ago by Justin Angevaare <[email protected]>
Minimal adjustements

github.com/BioJulia/XAM.jl - d38c2becf0dc15b27bd40237f313db74cae593b8 authored about 4 years ago by Ciarán O'Mara <[email protected]>
Begin crosschecks

github.com/BioJulia/XAM.jl - 433b8d14e8e11735d4196b71bf29f83482cd3ebd authored about 4 years ago by Ciarán O'Mara <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl_archive - b2c196d16254142948b4471d23b8139cadae68e2 authored about 4 years ago by jdselwyn <[email protected]>
Update ProbabilityStates.jl

github.com/BioJulia/PopGen.jl - b2c196d16254142948b4471d23b8139cadae68e2 authored about 4 years ago by jdselwyn <[email protected]>
add moments-based estimators to module

github.com/BioJulia/PopGen.jl_archive - 4b37b74ae6641fa349d9190670d888f839e0bccb authored about 4 years ago by Pavel Dimens <[email protected]>
add moments-based estimators to module

github.com/BioJulia/PopGen.jl - 4b37b74ae6641fa349d9190670d888f839e0bccb authored about 4 years ago by Pavel Dimens <[email protected]>
remove redundant broadcast ops

github.com/BioJulia/PopGen.jl_archive - d5bdfdf2ccd4e2b7b0e4e158b74dc1f434f3aba4 authored about 4 years ago by Pavel Dimens <[email protected]>
remove redundant broadcast ops

github.com/BioJulia/PopGen.jl - d5bdfdf2ccd4e2b7b0e4e158b74dc1f434f3aba4 authored about 4 years ago by Pavel Dimens <[email protected]>
fix multithreading on fstat perm

github.com/BioJulia/PopGen.jl_archive - 798791bd1f8f148a131861695d90c9ce9de9c6ad authored about 4 years ago by Pavel Dimens <[email protected]>
fix multithreading on fstat perm

github.com/BioJulia/PopGen.jl - 798791bd1f8f148a131861695d90c9ce9de9c6ad authored about 4 years ago by Pavel Dimens <[email protected]>
minor cleanup

github.com/BioJulia/PopGen.jl_archive - 1d22be9825ce76f642e98ec37c6a79d2f233d121 authored about 4 years ago by Pavel Dimens <[email protected]>
minor cleanup

github.com/BioJulia/PopGen.jl - 1d22be9825ce76f642e98ec37c6a79d2f233d121 authored about 4 years ago by Pavel Dimens <[email protected]>
Restrict DataFrames version to 0.19 and 0.20

github.com/BioJulia/GenomicAnnotations.jl - af494f29ba462d2b7559e0f9c1e96d36c9d1270c authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated version number

github.com/BioJulia/GenomicAnnotations.jl - c7bf08fe63914922177e18b7cbeb34bc7b8568f6 authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated TagBot cron schedule

github.com/BioJulia/GenomicAnnotations.jl - 6d078d3c56ffd876aaf49a037fc2c69157b2f2c1 authored about 4 years ago by Karl Dyrhage <[email protected]>
minor update to docstring

github.com/BioJulia/PopGen.jl_archive - 3a6d96408ab02e024a30ab48aaf44bbf0b8e9bf9 authored about 4 years ago by Pavel Dimens <[email protected]>
minor update to docstring

github.com/BioJulia/PopGen.jl - 3a6d96408ab02e024a30ab48aaf44bbf0b8e9bf9 authored about 4 years ago by Pavel Dimens <[email protected]>
slack trigger test

github.com/BioJulia/PopGen.jl - 91d3985d2695acd7aee06700634a045add48bc8b authored about 4 years ago by Pavel Dimens <[email protected]>
slack trigger test

github.com/BioJulia/PopGen.jl_archive - 91d3985d2695acd7aee06700634a045add48bc8b authored about 4 years ago by Pavel Dimens <[email protected]>
proper multithreading

github.com/BioJulia/PopGen.jl - ac10bf2495a16188fd49b117ed81405dca6817c7 authored about 4 years ago by Pavel Dimens <[email protected]>
proper multithreading

github.com/BioJulia/PopGen.jl_archive - ac10bf2495a16188fd49b117ed81405dca6817c7 authored about 4 years ago by Pavel Dimens <[email protected]>
refactor relatedness for threadsafety

github.com/BioJulia/PopGen.jl_archive - 28465916fcaa49296435490feea65a77bd730d65 authored about 4 years ago by Pavel Dimens <[email protected]>
refactor relatedness for threadsafety

github.com/BioJulia/PopGen.jl - 28465916fcaa49296435490feea65a77bd730d65 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl_archive - a20a3b9e5ad90d95fab5a9d965bd18f740972ca4 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

github.com/BioJulia/PopGen.jl - a20a3b9e5ad90d95fab5a9d965bd18f740972ca4 authored about 4 years ago by Pavel Dimens <[email protected]>
minor info change

github.com/BioJulia/PopGen.jl_archive - bad332e6eceb69e57d5806df75669f8a5cfe0f20 authored about 4 years ago by Pavel Dimens <[email protected]>
minor info change

github.com/BioJulia/PopGen.jl - bad332e6eceb69e57d5806df75669f8a5cfe0f20 authored about 4 years ago by Pavel Dimens <[email protected]>
Added information about headers

github.com/BioJulia/GenomicAnnotations.jl - 91f800607f5d6c688f16d85594c6b30d7e9eca6f authored about 4 years ago by Karl Dyrhage <[email protected]>
Require full GFF3 header

github.com/BioJulia/GenomicAnnotations.jl - af9730ce8d5208f76dc667847130e92ebd66346d authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed 'matrix'

github.com/BioJulia/GenomicAnnotations.jl - 09629dbb495e4b80e8a9b687aaea1341064ad822 authored about 4 years ago by Karl Dyrhage <[email protected]>
Added .gitignore

github.com/BioJulia/GenomicAnnotations.jl - 8750045e612c6aa960fce75fa274fd6281d90216 authored about 4 years ago by Karl Dyrhage <[email protected]>
Travis

github.com/BioJulia/GenomicAnnotations.jl - 8ad2c66e1cb90e7395c463ad5360299465400f3b authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed typo

github.com/BioJulia/GenomicAnnotations.jl - 02e2244e7e8304c5437bb4cfff241f9ab07300cc authored about 4 years ago by Karl Dyrhage <[email protected]>
DataFrames version

github.com/BioJulia/GenomicAnnotations.jl - 6400df871c1925d99e9d170d09e35a8f5687e66a authored about 4 years ago by Karl Dyrhage <[email protected]>
Added readgff docstring

github.com/BioJulia/GenomicAnnotations.jl - 9ebe26900b563ea17f88717e4453f68d92f4fa37 authored about 4 years ago by Karl Dyrhage <[email protected]>
Removed redundant function declaration

github.com/BioJulia/GenomicAnnotations.jl - 4741276200dc72d117c8d57dc36d2886120967be authored about 4 years ago by Karl Dyrhage <[email protected]>
Added GFF3 to docs

github.com/BioJulia/GenomicAnnotations.jl - 558b8c76024063b488817b6fe4f24a09342ca1cb authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated DataFrames dep version

github.com/BioJulia/GenomicAnnotations.jl - 4be960aced16b14517fd97f4b4fe7f7e43e505ea authored about 4 years ago by Karl Dyrhage <[email protected]>
Updated package and dep versions

github.com/BioJulia/GenomicAnnotations.jl - 9fb2c326382ee0737d1ee770e8975d912980188f authored about 4 years ago by Karl Dyrhage <[email protected]>
Allow passing file paths to readgbk/readgff

github.com/BioJulia/GenomicAnnotations.jl - 509703cda4b5767f46d2dfa1c0623ce0e12ee846 authored about 4 years ago by Karl Dyrhage <[email protected]>
add initial thread safety to relatedness

github.com/BioJulia/PopGen.jl - afd56a90ed258e7a0399160f93e1fb2977bedd68 authored about 4 years ago by Pavel V. Dimens <[email protected]>
add initial thread safety to relatedness

github.com/BioJulia/PopGen.jl_archive - afd56a90ed258e7a0399160f93e1fb2977bedd68 authored about 4 years ago by Pavel V. Dimens <[email protected]>
add inbreeding toggle for relatedness

github.com/BioJulia/PopGen.jl - aba87f29431c5d339a0c063717cc44d8a0ad34a0 authored about 4 years ago by Pavel Dimens <[email protected]>