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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Merge pull request #10 from hsianktin/master

bugfix for delete!(genes)

github.com/BioJulia/GenomicAnnotations.jl - a459172efb1ad6ede3785f689b109c1599c4a84d authored about 1 year ago by Karl Dyrhage <[email protected]>
Added julia v1.8 and v1.9 to travis

github.com/BioJulia/GenomicAnnotations.jl - fd98dc7f1bcba50bf597be882fb40e1303432f11 authored about 1 year ago by Karl Dyrhage <[email protected]>
Added reader writer for the EMBL file format

github.com/BioJulia/GenomicAnnotations.jl - a4b3b7bdab64a6a9cd72d13aac089794378e21f0 authored about 1 year ago by Karl Dyrhage <[email protected]>
Update README.md

Correct automa image link.

github.com/BioJulia/Automa.jl - 733b8cf6777070c8da83dc2f843e931bb8a82b19 authored about 1 year ago by Ciarán O'Mara <[email protected]>
Merge pull request #565 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 6b07d086bb6fe7c00f9e43a27294953c8d27f153 authored about 1 year ago by Dan Kool <[email protected]>
Update Documenter.yml

github.com/BioJulia/BioMakie.jl - 4c374d700df0befcfb4c5a88cb121eeca5239120 authored about 1 year ago by Dan Kool <[email protected]>
ci

github.com/BioJulia/BioMakie.jl - f962a31e5dc11c0c2a678eb224307d0cbf271ae3 authored about 1 year ago by Daniel Kool <[email protected]>
Merge pull request #564 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 84d50eb6e3fb94c84ec1e611e1beabf3f6f855c6 authored about 1 year ago by Dan Kool <[email protected]>
Update ci2.yml

github.com/BioJulia/BioMakie.jl - 1ef159746a8e5eca336d2689140052c541850342 authored about 1 year ago by Dan Kool <[email protected]>
Update CI.yml

github.com/BioJulia/BioMakie.jl - 65890c5b4ef4e29ab0ba8bf5e4bca805c606f753 authored about 1 year ago by Dan Kool <[email protected]>
Merge pull request #563 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 7158c89ea6da230cb95807cd6235cd7574ef7af7 authored about 1 year ago by Dan Kool <[email protected]>
Update README.md

github.com/BioJulia/BioMakie.jl - cb54cc28df73dfff01af48d0ec8e389de41a0b03 authored about 1 year ago by Dan Kool <[email protected]>
Small fixes

* Remove the erroneous method Base.:*() with empty Varargs, and make sure
that there is at lea...

github.com/BioJulia/BioSequences.jl - ee92aad18fa969ecfad604a104ecc4b0c4b697f0 authored about 1 year ago by Jakob Nybo Nissen <[email protected]>
Update README.md

github.com/BioJulia/BioMakie.jl - 7dc05c0fe999a9424020b643cb12a0c9e41ff52b authored about 1 year ago by Dan Kool <[email protected]>
Fix link to blog post

github.com/BioJulia/Bio.jl - 19a8f1b6622734f8941ad57b2afb4dae4cbc9057 authored about 1 year ago by Kevin Bonham <[email protected]>
Fix links

github.com/BioJulia/Bio.jl - 5c6e893e9739faea1f1b28948fb4c337d1abac4c authored about 1 year ago by Kevin Bonham <[email protected]>
Merge pull request #20 from Emiller88/join

Add join page

github.com/BioJulia/biojulia.github.io - d6dc22adc7c89001aee1112156680d609acced32 authored about 1 year ago by Kevin Bonham <[email protected]>
mostly ci docs

github.com/BioJulia/BioMakie.jl - fa790998c33857268736322c77328d1f244839ed authored about 1 year ago by Daniel Kool <[email protected]>
Merge pull request #562 from kool7d/dev

docs workflows

github.com/BioJulia/BioMakie.jl - 0c5766363f154e3a5b8cc8b8e7c672a02c54ad0f authored about 1 year ago by Dan Kool <[email protected]>
docs workflows

github.com/BioJulia/BioMakie.jl - 547bfd111adfed96af046912cf31f3e5cbc55ae5 authored about 1 year ago by Daniel Kool <[email protected]>
style: Clean up formatting a bit

github.com/BioJulia/biojulia.github.io - 2e13100a2ce61a6344aa4bf4450042b721800ecf authored about 1 year ago by Edmund Miller <[email protected]>
ci: pull_request => pull_request_target

github.com/BioJulia/biojulia.github.io - f3725bbed1508d2729878210fbe871a539592ced authored about 1 year ago by Edmund Miller <[email protected]>
refactor: Add Join BioJulia to header

github.com/BioJulia/biojulia.github.io - 01c49d5c102a7cd2b63a8c594a87cea190182346 authored about 1 year ago by Edmund Miller <[email protected]>
refactor: Move join to join page

github.com/BioJulia/biojulia.github.io - 23405348c055724ec6f85080626a3cd9a7ecea50 authored about 1 year ago by Edmund Miller <[email protected]>
Merge pull request #21 from Emiller88/old-posts

Add old blog posts

github.com/BioJulia/biojulia.github.io - 6280454e5d2766ba3158631417f9be5d82ea6c9a authored about 1 year ago by Kevin Bonham <[email protected]>
Merge pull request #561 from kool7d/dev

msatest

github.com/BioJulia/BioMakie.jl - e06c46f593a6268456f83d5078e6228329f6698b authored about 1 year ago by Dan Kool <[email protected]>
msatest

github.com/BioJulia/BioMakie.jl - 40513508ff5a43f77e02223d3572b564e42e7551 authored about 1 year ago by Daniel Kool <[email protected]>
Fix tests (#283)

Mitigate breaking Julia change for Julia 1.11

Turns out Julia is allowed to change the types ...

github.com/BioJulia/BioSequences.jl - 2f9ff4669c758519b7f524ca45c7181dcc58e33f authored about 1 year ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #13 from CiaranOMara/CiaranOMara-patch-CONTRIBUTING

Update CONTRIBUTING.md

github.com/BioJulia/Contributing - 3a411e59aeb97e7a8181ed006557fbe13776d2c6 authored about 1 year ago by Kevin Bonham <[email protected]>
Update CONTRIBUTING.md

github.com/BioJulia/Contributing - 521bbb07011565d2d92ec5f1d162d293f53c2e34 authored about 1 year ago by Ciarán O'Mara <[email protected]>
Patch bump, SingleCell10x compat

github.com/BioJulia/SingleCellProjections.jl - b986a4f2f0c03ebebcd0c8b3117788beae8206f9 authored about 1 year ago by Rasmus Henningsson <[email protected]>
Merge pull request #21 from BioJulia/compathelper/new_version/2023-05-02-01-15-00-411-01111483393

CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - 6dbcd9b865e849755f70a73f1c0b7b8125b39e8e authored about 1 year ago by Pavel V. Dimens <[email protected]>
Unit test PrincipalMomentAnalysis extension

github.com/BioJulia/SingleCellProjections.jl - 35f462d584a3bdf113d3fbb8fefd56fa49c8b06c authored about 1 year ago by Rasmus Henningsson <[email protected]>
Package extensions (#9)

Migration from Requires.jl to Package Extensions.

Follows the description from:
https://pkgd...

github.com/BioJulia/SingleCellProjections.jl - 66e2e7358336ff93af7b0212b379fe69c4d453f0 authored about 1 year ago by Rasmus Henningsson <[email protected]>
Add badge for stable docs

github.com/BioJulia/SingleCellProjections.jl - 90d692e62206bb1859dcd5d2572fc47b2faf6c62 authored about 1 year ago by Rasmus Henningsson <[email protected]>
Update doc links after repo move

github.com/BioJulia/SingleCellProjections.jl - 182399028ee496b777b668f2f249a378f0413bf3 authored about 1 year ago by Rasmus Henningsson <[email protected]>
Merge pull request #10 from BioJulia/dev

Quick fixes + Pkg environment note

github.com/BioJulia/BioJuliaDocs - 78b78f4681e8155549e8aeec87440c3f0630883d authored about 1 year ago by Michael Persico <[email protected]>
Merge pull request #559 from kool7d/dev

ci fix 1

github.com/BioJulia/BioMakie.jl - 15d7cd35caab5439199e8f11b014da4c08942638 authored about 1 year ago by Dan Kool <[email protected]>
ci fix 1

github.com/BioJulia/BioMakie.jl - 4f40ad75eafb9e687841b79897ca830dfde50421 authored about 1 year ago by Daniel Kool <[email protected]>
Merge pull request #558 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 4b80dc28c393f7e20c24f1b3e8e6ceca45cdc084 authored about 1 year ago by Dan Kool <[email protected]>
ci2

github.com/BioJulia/BioMakie.jl - 3a6a65742fc27b6da23c786f7e6c3ebfbe9bf27d authored about 1 year ago by Daniel Kool <[email protected]>
Update CI.yml

github.com/BioJulia/BioMakie.jl - c08efd03dd68743acbab02c19109d951055e3b67 authored about 1 year ago by Dan Kool <[email protected]>
Merge pull request #557 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - cbac9586142a86dd4af377b7afffb5ee9cca31ee authored about 1 year ago by Dan Kool <[email protected]>
Update Documenter.yml

github.com/BioJulia/BioMakie.jl - de446055a0a1ceeb39472316dc8c5f54398f1aba authored about 1 year ago by Dan Kool <[email protected]>
Update CI.yml

github.com/BioJulia/BioMakie.jl - d819c7ebf83ef20f3e13c47e401f7e10d7b8c72c authored about 1 year ago by Dan Kool <[email protected]>
Merge pull request #556 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 6089d4584c465f18e614bd509f8b877233ee954a authored about 1 year ago by Dan Kool <[email protected]>
Update README.md

github.com/BioJulia/BioMakie.jl - 75693c7fb3809c483e87a7a078fc8da00a2dea3f authored about 1 year ago by Dan Kool <[email protected]>
pics fix 3

github.com/BioJulia/BioMakie.jl - 5dd52ad795f73caa352a50927fdfe340f44a20aa authored about 1 year ago by Daniel Kool <[email protected]>
pics fix 2

github.com/BioJulia/BioMakie.jl - 209eee4452085a986ba558f6b9ca5341feaae3d4 authored about 1 year ago by Daniel Kool <[email protected]>
pics fix

github.com/BioJulia/BioMakie.jl - c3e8dd5fdcb6836fbe6127858c5546080c7ee61f authored about 1 year ago by Daniel Kool <[email protected]>
new face 1

github.com/BioJulia/BioMakie.jl - f307eedda1a217814b1b8635e680a36f275482ea authored about 1 year ago by Daniel Kool <[email protected]>
Merge pull request #555 from kool7d/dev

big update 1

github.com/BioJulia/BioMakie.jl - f7529e1b300a83a683ecdad318da4ddaa92d65c0 authored about 1 year ago by Dan Kool <[email protected]>
big update 1

github.com/BioJulia/BioMakie.jl - 975a4ac770f5ec9a8dfab6862322fe745a91b17e authored about 1 year ago by Daniel Kool <[email protected]>
Merge pull request #22 from Emiller88/fix-deploy

ci: Try to fix deployment from forks

github.com/BioJulia/biojulia.github.io - efd32ff6684038769a528a98dcb2ff2c45647efd authored about 1 year ago by Kevin Bonham <[email protected]>
Add hardware page

Still doesn't work

github.com/BioJulia/biojulia.github.io - 69bbadd7df5c49891da31130b30c6e7de9e27820 authored about 1 year ago by Edmund Miller <[email protected]>
ci: Use built in if

github.com/BioJulia/biojulia.github.io - e11c3108097857c53bcce57b5f812b3b77a9bd2e authored about 1 year ago by Edmund Miller <[email protected]>
ci: Try to fix deployment from forks

It has to be merged before it takes effect
https://github.com/nf-core/tools/issues/765#issuecomm...

github.com/BioJulia/biojulia.github.io - 7e2a18a486ea65733585739206755da319945569 authored about 1 year ago by Edmund Miller <[email protected]>
Merge pull request #19 from Emiller88/devcontainer

Add devcontainer and instructions to build site

github.com/BioJulia/biojulia.github.io - e31a78aa06cf0aec8774d6f980e8c6ccfaa710e2 authored about 1 year ago by Kevin Bonham <[email protected]>
Toss in some TODOs

github.com/BioJulia/biojulia.github.io - 1b2419c5f0e57fafeb96123758b05700b24870b8 authored about 1 year ago by Edmund Miller <[email protected]>
Add seq-lang title

github.com/BioJulia/biojulia.github.io - 56a5eca07bfddd345f730b8602495a99325aa959 authored about 1 year ago by Edmund Miller <[email protected]>
Fix automa images

github.com/BioJulia/biojulia.github.io - 5d522cae2aa5b8be8f4a3e2e064bd190be8d6804 authored about 1 year ago by Edmund Miller <[email protected]>
Found the culprit

github.com/BioJulia/biojulia.github.io - 86261f15c7e39541be9e08b8c9e2ca19b1359e03 authored about 1 year ago by Edmund Miller <[email protected]>
Fix some quotes

github.com/BioJulia/biojulia.github.io - cad3e97e99acc0658f352d35a031bd95c8c6d200 authored about 1 year ago by Edmund Miller <[email protected]>
Give up on links in headers for Franklin

github.com/BioJulia/biojulia.github.io - b12e6b20d1287740bf04f38ddc24b4e228ab9d01 authored about 1 year ago by Edmund Miller <[email protected]>
Make links relative

github.com/BioJulia/biojulia.github.io - ae4bd556e60eef30185ac84244edeeae8c277a6b authored about 1 year ago by Edmund Miller <[email protected]>
Add initial posts page

github.com/BioJulia/biojulia.github.io - ead83ecdb613b39eafc41dc518834390f42fe3c7 authored about 1 year ago by Edmund Miller <[email protected]>
Add biojl assets

github.com/BioJulia/biojulia.github.io - da9cb2b529282d5b86441948b6eae3f77784b172 authored about 1 year ago by Edmund Miller <[email protected]>
Rename blog post for any links

github.com/BioJulia/biojulia.github.io - 870b3e045a055e6ecfaf8cf05f5aa57ba0b49d40 authored about 1 year ago by Edmund Miller <[email protected]>
Fix seq-lang assets

github.com/BioJulia/biojulia.github.io - dc02659f1feb14f0fd89f814b1eaa4c6abbfdf65 authored about 1 year ago by Edmund Miller <[email protected]>
Add seq-lang blog post

github.com/BioJulia/biojulia.github.io - 55dccbdd2582979f1803aa37bb16cc96d8d836d8 authored about 1 year ago by Edmund Miller <[email protected]>
Add hardware that was in 0.1

github.com/BioJulia/biojulia.github.io - 5c7ac57b36839ae5acb3dd39a68dbd756756b1c8 authored about 1 year ago by Edmund Miller <[email protected]>
fix: Trying to fix automa post

github.com/BioJulia/biojulia.github.io - 87c2fb69697c4c90a0babcad5dc69c181442d912 authored about 1 year ago by Edmund Miller <[email protected]>
Merge pull request #12 from CiaranOMara/CiaranOMara-patch-PULL_REQUEST_TEMPLATE

Update PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/Contributing - e59650840a2a931345dee2e0ebd9b272aa89c6fe authored about 1 year ago by Kevin Bonham <[email protected]>
Add initial automa1 markdown

github.com/BioJulia/biojulia.github.io - fc2465636a3715fec27aece526438a2b1b9d2669 authored about 1 year ago by Edmund Miller <[email protected]>
docs: Add instructions to build the site

github.com/BioJulia/biojulia.github.io - 96c049293a6f2c7b31fde8edc8e012804ceaa6ba authored about 1 year ago by Edmund Miller <[email protected]>
build: Forward port 8000 for Franklin

github.com/BioJulia/biojulia.github.io - 92400a2532c821e95efb3ec2af4372ff81b3db4c authored about 1 year ago by Edmund Miller <[email protected]>
build: Fix project path

github.com/BioJulia/biojulia.github.io - a6d84a8bbd3baabae5954e70103bf2540152c444 authored about 1 year ago by Edmund Miller <[email protected]>
build: Add name and image to devcontainer

github.com/BioJulia/biojulia.github.io - 7338b824303ddc0353ba899679b9131bab53eba9 authored about 1 year ago by Edmund Miller <[email protected]>
build: Add devcontainer

Borrowed from
https://github.com/BioJulia/BioJuliaDocs/commit/2703d8f13877772ddf95b9164377ff6807...

github.com/BioJulia/biojulia.github.io - 89e4189a9716a97f5f13918543bf59c34bdcf6bc authored about 1 year ago by Edmund Miller <[email protected]>
Update PULL_REQUEST_TEMPLATE.md

github.com/BioJulia/Contributing - 6460728193d4b07a01cea9a05fcf6ee0e4d3dcb4 authored about 1 year ago by Ciarán O'Mara <[email protected]>
Do not assert mark has set with special macros

Special macros like `@abspos` previously inserted an assert that the buffer's
mark had been set....

github.com/BioJulia/Automa.jl - f676a6b02ea3f40c4eb87ad246111f677b8638fe authored about 1 year ago by Jakob Nybo Nissen <[email protected]>
fix missing ref to Package development section

github.com/BioJulia/BioJuliaDocs - 2d6b9c080cd970cc156325d8dc5335d3ec3b45a8 authored about 1 year ago by Michael Persico <[email protected]>
fix devcontainer.json

github.com/BioJulia/BioJuliaDocs - 0183053a9bb38d51ebd1877da8abb424e92de87c authored about 1 year ago by Michael Persico <[email protected]>
Quick fixes + Pkg environment note

Add some quick fixes suggested in #9.

Attempted to add them in the original pr, but Git was rais...

github.com/BioJulia/BioJuliaDocs - 969fce32f219b43012ceb2a706cb8ffd41bf4322 authored about 1 year ago by Michael Persico <[email protected]>
Merge pull request #9 from BioJulia/dev

Comparisons, Julia/BioJulia installation sections + devcontainer

github.com/BioJulia/BioJuliaDocs - b276171b56e1eef0538b9b1d746a34e7c1a64511 authored about 1 year ago by Michael Persico <[email protected]>
Update devcontainer.json

github.com/BioJulia/BioJuliaDocs - 3ae67bb49825c000266a94e5928567b049ea59bd authored about 1 year ago by Michael Persico <[email protected]>
remove unneeded Dockerfile

github.com/BioJulia/BioJuliaDocs - f772b56c30a1ed24eed49a9c07cbbe20e5514d97 authored about 1 year ago by Michael Persico <[email protected]>
remove SingleCellProjections for now

github.com/BioJulia/BioJuliaDocs - 779428562e731c9232bde4cd78c082cf68fc15bb authored about 1 year ago by Michael Persico <[email protected]>
add devcontainer

github.com/BioJulia/BioJuliaDocs - 2703d8f13877772ddf95b9164377ff68074d1370 authored about 1 year ago by Michael Persico <[email protected]>
additional comparisons, wrap up 'install julia/biojulia' sections, and skeleton case scenarios section

github.com/BioJulia/BioJuliaDocs - d26241753d32e318265fd159b000c185d2ce52e1 authored about 1 year ago by Michael Persico <[email protected]>
Merge pull request #553 from kool7d/dev

protosyn mutation example

github.com/BioJulia/BioMakie.jl - 6a68c3e9d8912138c0ae5ff498426863a24245df authored about 1 year ago by Dan Kool <[email protected]>
protosyn mutation example

github.com/BioJulia/BioMakie.jl - 101953e4990b940413cef7945d2950faf61fe4fa authored about 1 year ago by Daniel Kool <[email protected]>
Update and simplify CONTRIBUTING.md

github.com/BioJulia/Contributing - 58f917e48b39b0341e50580238b05546d29bf75f authored about 1 year ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #17 from BioJulia/styling

Fix badges

github.com/BioJulia/biojulia.github.io - 8ac2a603e4260ee6fe0069c2263a79f622360da6 authored about 1 year ago by Kevin Bonham <[email protected]>
change header 'C' to 'Bio'

github.com/BioJulia/biojulia.github.io - a94c1cf62291de69cb2719e2f014cbb6c7096239 authored about 1 year ago by Kevin Bonham <[email protected]>
try to fix badges

github.com/BioJulia/biojulia.github.io - fa0bb382275212f3027682f2023ce33c7bdce7f4 authored about 1 year ago by Kevin Bonham <[email protected]>
Merge pull request #10 from BioJulia/updates

Updates

github.com/BioJulia/Contributing - 83a2cf9513360f4f6f814dbc870d87fbc8f9bf90 authored about 1 year ago by Kevin Bonham <[email protected]>
Merge pull request #549 from kool7d/dev

Dev

github.com/BioJulia/BioMakie.jl - 4a57dcdcc8235916ea44432529f90b5a53350f3e authored about 1 year ago by Dan Kool <[email protected]>
meshes compat

github.com/BioJulia/BioMakie.jl - 343ecb8a712096e83150523f4f45dcb9362429ba authored about 1 year ago by Daniel Kool <[email protected]>
docs update examples

github.com/BioJulia/BioMakie.jl - 81509d063ed20969fb3424efe44ba7f2203c204b authored about 1 year ago by Daniel Kool <[email protected]>