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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

Minor changes

github.com/BioJulia/GenomicAnnotations.jl - 903a4bf13707ceb3fa7cac61084bac4af6a18a9e authored almost 4 years ago by Karl Dyrhage <[email protected]>
Fixed bug with DataFrames >0.20

github.com/BioJulia/GenomicAnnotations.jl - 2298d4d8fc0ace55e899195a4a0ea3de6cb082ad authored almost 4 years ago by Karl Dyrhage <[email protected]>
Updated DataFrames version

github.com/BioJulia/GenomicAnnotations.jl - cd1253e6362dbb703845844406c129ef2c168e0a authored almost 4 years ago by Karl Dyrhage <[email protected]>
Merge pull request #48 from pdimens/dev

bump to 0.4.2

github.com/BioJulia/PopGen.jl_archive - b5cb5e5e4cebc0ea2574a59ce9fbafa479346dca authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #48 from pdimens/dev

bump to 0.4.2

github.com/BioJulia/PopGen.jl - b5cb5e5e4cebc0ea2574a59ce9fbafa479346dca authored almost 4 years ago by Pavel V. Dimens <[email protected]>
directory restructuring for scratch

github.com/BioJulia/PopGen.jl - 616d4d53c607a6c47d4d8e9141a7bcd4db580ec9 authored almost 4 years ago by Pavel Dimens <[email protected]>
directory restructuring for scratch

github.com/BioJulia/PopGen.jl_archive - 616d4d53c607a6c47d4d8e9141a7bcd4db580ec9 authored almost 4 years ago by Pavel Dimens <[email protected]>
bump vers and update tests for macro sharks/cats

github.com/BioJulia/PopGen.jl_archive - 0e59ebf118b6451d01b1ed8a95e7bcfbca472fa5 authored almost 4 years ago by Pavel Dimens <[email protected]>
bump vers and update tests for macro sharks/cats

github.com/BioJulia/PopGen.jl - 0e59ebf118b6451d01b1ed8a95e7bcfbca472fa5 authored almost 4 years ago by Pavel Dimens <[email protected]>
add @nancycats @gulfsharks, depwarns on old

github.com/BioJulia/PopGen.jl - 5466ef8fc79fec8d9e40ad6625adb764bf892be2 authored almost 4 years ago by Pavel Dimens <[email protected]>
add @nancycats @gulfsharks, depwarns on old

github.com/BioJulia/PopGen.jl_archive - 5466ef8fc79fec8d9e40ad6625adb764bf892be2 authored almost 4 years ago by Pavel Dimens <[email protected]>
remove graphs deps

complete accident that they were included

github.com/BioJulia/PopGen.jl_archive - d91fd8a6276f8507e17eab327091d0fb4fae61a3 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
remove graphs deps

complete accident that they were included

github.com/BioJulia/PopGen.jl - d91fd8a6276f8507e17eab327091d0fb4fae61a3 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
fixed population!()

github.com/BioJulia/PopGen.jl - e3fa407122c4fbac960cdb8732fbae4a5f110014 authored almost 4 years ago by Pavel Dimens <[email protected]>
fixed population!()

github.com/BioJulia/PopGen.jl_archive - e3fa407122c4fbac960cdb8732fbae4a5f110014 authored almost 4 years ago by Pavel Dimens <[email protected]>
bump vers

github.com/BioJulia/PopGen.jl_archive - 72c2db31838d648d00207811fd8b68b62d5cd705 authored almost 4 years ago by Pavel Dimens <[email protected]>
bump vers

github.com/BioJulia/PopGen.jl - 72c2db31838d648d00207811fd8b68b62d5cd705 authored almost 4 years ago by Pavel Dimens <[email protected]>
bump version number, correctly

github.com/BioJulia/PopGen.jl - 3cf0fd84d9fac480d739abda5f365d5586cf3d6c authored almost 4 years ago by Pavel Dimens <[email protected]>
bump version number, correctly

github.com/BioJulia/PopGen.jl_archive - 3cf0fd84d9fac480d739abda5f365d5586cf3d6c authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl_archive - e7eac853d036bd04940b13755dd4cd0d4ccf77bf authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

github.com/BioJulia/PopGen.jl - e7eac853d036bd04940b13755dd4cd0d4ccf77bf authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #42 from pdimens/compathelper/new_version/2020-11-15-00-39-45-225-947094218

CompatHelper: bump compat for "CSV" to "0.8" and fix version number

github.com/BioJulia/PopGen.jl - dd4080a3d7e8ef9b1dd7359580759c2b319b8c65 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #42 from pdimens/compathelper/new_version/2020-11-15-00-39-45-225-947094218

CompatHelper: bump compat for "CSV" to "0.8" and fix version number

github.com/BioJulia/PopGen.jl_archive - dd4080a3d7e8ef9b1dd7359580759c2b319b8c65 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-11-15-00-39-45-225-947094218

github.com/BioJulia/PopGen.jl_archive - e99e5db119d0e832eb5d298e921007df36817b21 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-11-15-00-39-45-225-947094218

github.com/BioJulia/PopGen.jl - e99e5db119d0e832eb5d298e921007df36817b21 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #43 from pdimens/compathelper/new_version/2020-11-16-00-39-29-445-2465782919

CompatHelper: bump compat for "DataFrames" to "0.22"

github.com/BioJulia/PopGen.jl - 00ece5b7d6914e73942a0584bd6947c4f40ea46e authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #43 from pdimens/compathelper/new_version/2020-11-16-00-39-29-445-2465782919

CompatHelper: bump compat for "DataFrames" to "0.22"

github.com/BioJulia/PopGen.jl_archive - 00ece5b7d6914e73942a0584bd6947c4f40ea46e authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #44 from pdimens/compathelper/new_version/2020-11-16-00-39-43-936-4263952489

CompatHelper: bump compat for "JLD2" to "0.3"

github.com/BioJulia/PopGen.jl_archive - b56e23d92dc2529840b5671b18af0adf2d8fd5bc authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #44 from pdimens/compathelper/new_version/2020-11-16-00-39-43-936-4263952489

CompatHelper: bump compat for "JLD2" to "0.3"

github.com/BioJulia/PopGen.jl - b56e23d92dc2529840b5671b18af0adf2d8fd5bc authored almost 4 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for "DataFrames" to "0.22" (#29)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

github.com/BioJulia/BioStructures.jl - 58f59fb0c0c338348b65b8ac4617c3ce92ec5af3 authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "JLD2" to "0.3"

github.com/BioJulia/PopGen.jl_archive - 9939806ba94c5afeecfc44d6ea19eacc86ec82af authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "JLD2" to "0.3"

github.com/BioJulia/PopGen.jl - 9939806ba94c5afeecfc44d6ea19eacc86ec82af authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "DataFrames" to "0.22"

github.com/BioJulia/PopGen.jl - c31f1550bcf515355819a1c27003de92fba19e53 authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "DataFrames" to "0.22"

github.com/BioJulia/PopGen.jl_archive - c31f1550bcf515355819a1c27003de92fba19e53 authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Fix line counting

github.com/BioJulia/FASTX.jl - 7c80fb9753ed9bd0c813506678d458fb8ee77d11 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
CompatHelper: bump compat for "CSV" to "0.8"

github.com/BioJulia/PopGen.jl - cf85482d902f409f89e7ec69b4941e2d320867ec authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "CSV" to "0.8"

github.com/BioJulia/PopGen.jl_archive - cf85482d902f409f89e7ec69b4941e2d320867ec authored almost 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
remove references to wang/dyadML

github.com/BioJulia/PopGen.jl_archive - ae808599e7f1f2c07686ed0842a1aa34e923d342 authored almost 4 years ago by Pavel Dimens <[email protected]>
remove references to wang/dyadML

github.com/BioJulia/PopGen.jl - ae808599e7f1f2c07686ed0842a1aa34e923d342 authored almost 4 years ago by Pavel Dimens <[email protected]>
Update TagBot.yml

github.com/BioJulia/PopGen.jl - bd539518b71d157c74ea4b36b4d858c406fa77f7 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Update TagBot.yml

github.com/BioJulia/PopGen.jl_archive - bd539518b71d157c74ea4b36b4d858c406fa77f7 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #39 from pdimens/dev

stage 0.1.0 release

github.com/BioJulia/PopGen.jl_archive - a218bf41ab249199099e2a411ff62b9c1b4b5303 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #39 from pdimens/dev

stage 0.1.0 release

github.com/BioJulia/PopGen.jl - a218bf41ab249199099e2a411ff62b9c1b4b5303 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'release' into dev

github.com/BioJulia/PopGen.jl - 36e1dfc7c3477555659472d052c30b536bd702d3 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'release' into dev

github.com/BioJulia/PopGen.jl_archive - 36e1dfc7c3477555659472d052c30b536bd702d3 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
change to v0.1.0

change version number to reflect breaking changes.

github.com/BioJulia/PopGen.jl_archive - 2ba045707d20a9b76b03bdeedd3287dd4309b7a1 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
change to v0.1.0

change version number to reflect breaking changes.

github.com/BioJulia/PopGen.jl - 2ba045707d20a9b76b03bdeedd3287dd4309b7a1 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
fix alleles miss=true and type stability

github.com/BioJulia/PopGen.jl - 109b7105115254bf1aeb82ccbe6c78035219c937 authored almost 4 years ago by Pavel Dimens <[email protected]>
fix alleles miss=true and type stability

github.com/BioJulia/PopGen.jl_archive - 109b7105115254bf1aeb82ccbe6c78035219c937 authored almost 4 years ago by Pavel Dimens <[email protected]>
Fix description newline bug

github.com/BioJulia/FASTX.jl - ced3d8b6fdcd79d104130c5e7c9fd8f4c1458ce6 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Fix `ReferenceSequence` slicing bug (#125)

github.com/BioJulia/BioSequences.jl - 1617206bc5c35934b790ef28c86e96906b3e77f8 authored almost 4 years ago by lhnguyen-vn <[email protected]>
Allow hamming circle around N (#126)

Allow hamming circle around N & add more tests

github.com/BioJulia/BioSequences.jl - 5c14f3f363c6a36f069ace10b352013da4cae501 authored almost 4 years ago by Thomas Poulsen <[email protected]>
relax Format.jl compat

github.com/BioJulia/BioStructures.jl - b69e5dd5a441dfe62f1b03d6d3c8f16457a1907a authored almost 4 years ago by Joe Greener <[email protected]>
bump version

github.com/BioJulia/BioStructures.jl - 144135fbabf976aa671ed9b12e46f89d83a6ed23 authored almost 4 years ago by Joe Greener <[email protected]>
disallow Format.jl v1.2

github.com/BioJulia/BioStructures.jl - e4099430444d2de806ec8ac8caebc613e7b54b0c authored almost 4 years ago by Joe Greener <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl_archive - acf122fb6e6582ad5f022d7139b48aa6f36d1006 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
Update Utils.jl

github.com/BioJulia/PopGen.jl - acf122fb6e6582ad5f022d7139b48aa6f36d1006 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
add relatedness posthocs

github.com/BioJulia/PopGen.jl - 48b67e5af2238ca74f781e30879f79f6ddd045ee authored almost 4 years ago by Pavel Dimens <[email protected]>
add relatedness posthocs

github.com/BioJulia/PopGen.jl_archive - 48b67e5af2238ca74f781e30879f79f6ddd045ee authored almost 4 years ago by Pavel Dimens <[email protected]>
Fix code when p_end != p_eof

github.com/BioJulia/Automa.jl - 264d436b436e56653ebb92cfe0dc54e1a102d30e authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Include simd generator

github.com/BioJulia/Automa.jl - 93521aa88a2db1865348dbb72adeaa45932f262f authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #8 from BioJulia/compathelper/new_version/2020-10-22-10-15-32-887-1417949860

CompatHelper: bump compat for "AbstractPlotting" to "0.13"

github.com/BioJulia/KmerAnalysisMakie.jl - 77d30f964372c3c3b54f6ad9e51f3c8ea175bf37 authored almost 4 years ago by Ben J. Ward <[email protected]>
Fix SSSE3 support

github.com/BioJulia/Automa.jl - 8b590d055f7ad618ff57e126317ce35664367c12 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Add inital SIMD code

github.com/BioJulia/Automa.jl - 477e2ac0008a8165eaa51069dcc32362a9fb869e authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Merge pull request #51 from jakobnissen/reducenodes

Optimize reduce_nodes

github.com/BioJulia/Automa.jl - 5d7b04f4db60ca356cf386338bf81ad2aed6fdcf authored almost 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #58 from jakobnissen/simplemember

Simplify membership codegen

github.com/BioJulia/Automa.jl - 17f203dd14a56f32ff16e807933d28d03728c0c6 authored almost 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #55 from jakobnissen/noactions

Allow no actions in generate exec code

github.com/BioJulia/Automa.jl - d77a797c2b41be35642154379a3ee2e53f2332cb authored almost 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #57 from jakobnissen/edgereduction

Improve DFA edge reduction

github.com/BioJulia/Automa.jl - c38590596f89a00c357f1bec5ff3f2edd7794018 authored almost 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #49 from jakobnissen/fixamb

Disallow DFAs with ambiguous actions [RFC]

github.com/BioJulia/Automa.jl - 7c119fb5ef4815148a6f2faabf08a5a3b120b9a1 authored almost 4 years ago by Ben J. Ward <[email protected]>
Merge pull request #34 from BioJulia/rollout-contributing

Contributing files rollout

github.com/BioJulia/Automa.jl - 97b750f91f5c9bfdd2c96160fca4efeed1eb81e6 authored almost 4 years ago by Ben J. Ward <[email protected]>
Simplify membership codegen

github.com/BioJulia/Automa.jl - f075a911842e60a10d84a1284ca8cd312363e5f4 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Improve DFA edge reduction

github.com/BioJulia/Automa.jl - 228652bc083631a69ba5ddedca3f3f9592594e8a authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Fix infinite loop with epsilon edge

github.com/BioJulia/Automa.jl - 38b1b20f2c1619dd50275f57789a5760e7296de6 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
Allow no actions in generate exec code

github.com/BioJulia/Automa.jl - 82727fb6a531e81421feb39e4e49a967a5c69720 authored almost 4 years ago by Jakob Nybo Nissen <[email protected]>
add manipulate tests

github.com/BioJulia/PopGen.jl_archive - 5467d3c7155afd43d14ddc2f8af2ed9919cf45e3 authored about 4 years ago by Pavel Dimens <[email protected]>
add manipulate tests

github.com/BioJulia/PopGen.jl - 5467d3c7155afd43d14ddc2f8af2ed9919cf45e3 authored about 4 years ago by Pavel Dimens <[email protected]>
CompatHelper: bump compat for "AbstractPlotting" to "0.13"

github.com/BioJulia/KmerAnalysisMakie.jl - bea0ef5831bebf7c669dc907030af7fcc3c72463 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
mroe test fixes

github.com/BioJulia/PopGen.jl - 808155cfa992cff467e7cf1c9df0daf48d762541 authored about 4 years ago by Pavel Dimens <[email protected]>
mroe test fixes

github.com/BioJulia/PopGen.jl_archive - 808155cfa992cff467e7cf1c9df0daf48d762541 authored about 4 years ago by Pavel Dimens <[email protected]>
fix tests

github.com/BioJulia/PopGen.jl_archive - 2d011b40076f7506b052ad3aad08910142a64ef0 authored about 4 years ago by Pavel Dimens <[email protected]>
fix tests

github.com/BioJulia/PopGen.jl - 2d011b40076f7506b052ad3aad08910142a64ef0 authored about 4 years ago by Pavel Dimens <[email protected]>
fix and add tests

github.com/BioJulia/PopGen.jl - 1d5f685a304fb1524b3868f4221f918fddc26642 authored about 4 years ago by Pavel Dimens <[email protected]>
fix and add tests

github.com/BioJulia/PopGen.jl_archive - 1d5f685a304fb1524b3868f4221f918fddc26642 authored about 4 years ago by Pavel Dimens <[email protected]>
add missing, missing method

github.com/BioJulia/PopGen.jl_archive - 30cdacb4f58abb176aa384cf17e2d50cbd36b733 authored about 4 years ago by Pavel Dimens <[email protected]>
add missing, missing method

github.com/BioJulia/PopGen.jl - 30cdacb4f58abb176aa384cf17e2d50cbd36b733 authored about 4 years ago by Pavel Dimens <[email protected]>
add more tests

github.com/BioJulia/PopGen.jl - a13759618c0740f3ea29b7ad34c107548cfd2b76 authored about 4 years ago by Pavel Dimens <[email protected]>
add more tests

github.com/BioJulia/PopGen.jl_archive - a13759618c0740f3ea29b7ad34c107548cfd2b76 authored about 4 years ago by Pavel Dimens <[email protected]>
hopefully fix CI

github.com/BioJulia/PopGen.jl_archive - 0b02f6475f2b751b87c97d494e9d8603eddde193 authored about 4 years ago by Pavel Dimens <[email protected]>
hopefully fix CI

github.com/BioJulia/PopGen.jl - 0b02f6475f2b751b87c97d494e9d8603eddde193 authored about 4 years ago by Pavel Dimens <[email protected]>
add first tests

github.com/BioJulia/PopGen.jl - 1519e6d28fccca657b72f31aa0f8d37b5fbf466f authored about 4 years ago by Pavel Dimens <[email protected]>
add first tests

github.com/BioJulia/PopGen.jl_archive - 1519e6d28fccca657b72f31aa0f8d37b5fbf466f authored about 4 years ago by Pavel Dimens <[email protected]>
fix hetero_e for locus missing in pop

github.com/BioJulia/PopGen.jl_archive - 709be89a928f96d688f30aff07013d6d001c2a19 authored about 4 years ago by Pavel Dimens <[email protected]>
fix hetero_e for locus missing in pop

github.com/BioJulia/PopGen.jl - 709be89a928f96d688f30aff07013d6d001c2a19 authored about 4 years ago by Pavel Dimens <[email protected]>
add julia 1.5 build test

github.com/BioJulia/PopGen.jl - 1c8f9c7ccde3b03df6955a5b81c32a103eed6c8b authored about 4 years ago by Pavel V. Dimens <[email protected]>
add julia 1.5 build test

github.com/BioJulia/PopGen.jl_archive - 1c8f9c7ccde3b03df6955a5b81c32a103eed6c8b authored about 4 years ago by Pavel V. Dimens <[email protected]>
Update Project.toml

github.com/BioJulia/PopGen.jl_archive - 76a392fff4ae3dc87e4c02fb8499e5d6bc17e8de authored about 4 years ago by Pavel V. Dimens <[email protected]>
Update Project.toml

github.com/BioJulia/PopGen.jl - 76a392fff4ae3dc87e4c02fb8499e5d6bc17e8de authored about 4 years ago by Pavel V. Dimens <[email protected]>
fix writing error

github.com/BioJulia/PopGen.jl - c5cafa0525fc628f8dcf7fab76931211fad6e081 authored about 4 years ago by Pavel Dimens <[email protected]>
fix writing error

github.com/BioJulia/PopGen.jl_archive - c5cafa0525fc628f8dcf7fab76931211fad6e081 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #38 from pdimens/compathelper/new_version/2020-10-21-00-39-01-821-1863737854

CompatHelper: add new compat entry for "ProgressMeter" at version "1.4"

github.com/BioJulia/PopGen.jl_archive - 19bc662c4f2754eefd5c6b1003d85c2ca79032d4 authored about 4 years ago by Pavel V. Dimens <[email protected]>