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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
github.com/BioJulia/BioMakie.jl - d4114d217c57c54151e8a8ae4577bbf49cd0823e authored about 3 years ago by kool7d <[email protected]>
CompatHelper: add new compat entry for "NaturalSort" at version "1"
github.com/BioJulia/PopGen.jl - 9ada6aafd8b547a157c460c4ae4f93c8a87ac93f authored about 3 years ago by Pavel V. Dimens <[email protected]>github.com/BioJulia/PopGen.jl - 8bd820cddaf4caabb652cf90a22bc7690c0d3a8a authored about 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Remove undefined exports
github.com/BioJulia/BioSequences.jl - 43030faedc015c1a35df73ba904334a771efc30a authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioSequences.jl - c661f215104be1e9107fb46a457d07ea2cba6e01 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Add findfirst method for BioSymbol
github.com/BioJulia/BioSequences.jl - f1fdcdc48eaded0fc682d686341f0d6c02af8898 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioSequences.jl - 3200f9cd7df1dfe752ef194a40d5062d65f11bdf authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/BioSequences.jl - 5ae42e4cd3ddb9122577f2322d2070d7fa72f2b9 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Allow compact printing of alignments
github.com/BioJulia/BioAlignments.jl - 5a3354eed4039d9e845adb82da6e144416451132 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioAlignments.jl - 2c6f47f9a87091872e484d5394fd6ce86c241fdd authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
* SRR7993829_1.100K.forward.bam
Add test files for https://github.com/BioJulia/XAM.jl/issues/...
github.com/BioJulia/FormatSpecimens.jl - 20770c9a2ddf1dae4cccfb8a8f62de204f550f72 authored over 3 years ago by Ciarán O'Mara <[email protected]>github.com/BioJulia/PopGen.jl - 70be376104637894738b8026bd04c2c09421918c authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - 6ffdde743b958d9c4a428c354c5f96fd05a9013f authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - ca5b654637327f3e4f18b3dbe44b6ddb4fb2c305 authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - 8d3b60b8377c761b3af435d31aaecc5483e3d2ef authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - 8faa648ada8ab1348d9ab85b2c145939f42c4e39 authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - 41131325a2a955ea822167386f0918b8c3cbcade authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - df904cffaa440c2d370ea2cf7f5a58486b7b04b0 authored over 3 years ago by Pavel Dimens <[email protected]>
github.com/BioJulia/PopGen.jl - 8ec38c08d3d299f20769be572a872dc4acc719af authored over 3 years ago by Pavel Dimens <[email protected]>
Move to version 0.1.1
github.com/BioJulia/BioGenerics.jl - a75abaf459250e2b5e22b4d9adf25fd36d2acab6 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioGenerics.jl - a95a008f7084f2610727536a3d9fd7cc9cbbb9e3 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Add do syntax to AbstractFormattedIO built from other IO objects
github.com/BioJulia/BioGenerics.jl - 4624fa9c76f39935868e4ab12e877c32e93f1fa1 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioGenerics.jl - 5872c343f8c82ef4432fa186399acc34f4223a6c authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
CompatHelper: bump compat for "MultipleTesting" to "0.5"
github.com/BioJulia/PopGen.jl - 9d72d253738b0bf75599390111ed6a908ca73534 authored over 3 years ago by Pavel V. Dimens <[email protected]>github.com/BioJulia/BioAlignments.jl - d71c3999f2d2c47ebd02abfe4b2a6decbab724f0 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/FASTX.jl - c7079979e8a6a83ac2a3860baea929498835cdf9 authored over 3 years ago by Ben J. Ward <[email protected]>
github.com/BioJulia/BioSequences.jl - a8e5b48002b44c3c9afb79dbac98a9fa32949573 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Export RE.Regex and RE.RegexMatch as BioRegex and BioRegexMatch
github.com/BioJulia/BioSequences.jl - c3b0cca49c3106f7fe636935ae9693117589c011 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioSequences.jl - 88de9c73bc80847cfaaaab0541e97918f32d139f authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Allow trailing whitespace in sequences
github.com/BioJulia/FASTX.jl - 0d81f163d41eadb8e907a3471d1ab532402ddcff authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/FASTX.jl - af6b19ae667644055b919cd53d2a53b60f4119b7 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/FASTX.jl - c4f9fb81704908bb68a330c4c93a49f477e8eea9 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/FASTX.jl - d69c33b976bc14a04c7184b5ddac472f354c97f9 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/XAM.jl - 9d2a70531a32ee11770aca2f4397b2a00e8a9c9b authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/XAM.jl - 18dae0d45dc9432930fb7f880837d844c0b7ea9e authored over 3 years ago by Ciarán O’Mara <[email protected]>
Makes better use of the existing flow in [Automa.jl](https://github.com/BioJulia/Automa.jl/blob/...
github.com/BioJulia/XAM.jl - 8f26bbf4a728761de812dbfd296a286c988d7bbc authored over 3 years ago by Ciarán O’Mara <[email protected]>- Includes doctest in tests.
github.com/BioJulia/XAM.jl - c56eb0851a0876156656a002a119a311d596fe4e authored over 3 years ago by Ciarán O’Mara <[email protected]>github.com/BioJulia/XAM.jl - fa10f3bfcfa0e0dec43d2059a57dcdd7d7939ea3 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 505519d08d017b0170c14b1a3d06e9645145b75c authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - c0ba45a8ffc4bfdea2b6d89455a132f61f24e1e3 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Fixes #5.
github.com/BioJulia/GFF3.jl - adf203681b55f7a24df3ffb82ac1ea79a4ba5bec authored over 3 years ago by Ciarán O’Mara <[email protected]>github.com/BioJulia/GFF3.jl - 619cc79f6782eb4b35472e2c3be3fb98ebb21eea authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - f9066d8fe61d8073944fa97d64755b3690f84453 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 3278e1b73a8071d18d43c64fe52d1ee520275746 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - f1281dbb35a376f4ff84a456fcd572edf265abaf authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - d2614d538bdc3ecbb5f602b54e15370e49074593 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/GFF3.jl - 3e56dedb5b5ba247c3e3e06d3ccc32e36391c245 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - d3a1327a74ca83b0396c4cc69534dff15199c935 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 1c86cb30e7a7a634e12f705fe7a788caaddbc024 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 64a160f9f23ae5f53a5682dd82126fd0dda5786a authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - f0218a0f543f2877cf05fd2667993493eb49803a authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 217f54c2b8cf90074820a63b9a6148cfa409baad authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 33114fed41b87293226e4f34f7eeed7d44cdb0c1 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Finished to filled
github.com/BioJulia/GFF3.jl - 67710685c8b950ad56fdb17cf85a944ffc064293 authored over 3 years ago by Ciarán O’Mara <[email protected]>github.com/BioJulia/GFF3.jl - eddd420de43976a7ee243f15bb0198928805a2c3 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - da0c51e9f7869fc532ae62083020e329a564fcde authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 47e12370246aa39832e8778315a311c02a730165 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 672c08d4e160c1efa59d601b96a590a1718d400b authored over 3 years ago by Ciarán O'Mara <[email protected]>
Basic find and replace.
github.com/BioJulia/GFF3.jl - d905810436b1416d32db61d6ab123052df76468d authored over 3 years ago by Ciarán O'Mara <[email protected]>github.com/BioJulia/GFF3.jl - 5da58eefe837be2bea4f11b3824e53007fdd4dad authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - b0da4b74a0fc8f5abe9ec4d153f3ee4dfbef7cbb authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 768a0094136b8dfd2f531c4c339f9e365e45abf9 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/GFF3.jl - 54100a66c59dacc3cbfcadba50d3fcacb6e4b1d3 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - a20e5b596c87c0372e025368d4d49d56e1a51ed6 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/GFF3.jl - f4eee4764d0551bbdbbbc44f61268b062a86b273 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BioSequences.jl - e7cec9d23791a88ff8ab07ed72cdc36668246284 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/BioSequences.jl - 8ae45af4151d339084426facebd0fb106ea49306 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/BioSequences.jl - aeb6435775eb6a46509d7a5e5a3a844d32f76887 authored over 3 years ago by Ben J. Ward <[email protected]>
github.com/BioJulia/BED.jl - f63c3ace613f4b3bfdf3b77ea057211ec27373ce authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - 2160827b839c119701c3e3c1cc56c8c64660ba46 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - 2a988e2b2de895258e4df368b95d829e97b1487d authored over 3 years ago by Ciarán O’Mara <[email protected]>
Add fast equality for BioSequence
github.com/BioJulia/BioSequences.jl - 0c17505208763b721fb8b72456a2b952b5274a73 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BioSequences.jl - 43459ef8fb14c0884024c0fc0ca352fff0526d3d authored over 3 years ago by Jakob Nybo Nissen <[email protected]>
Bump compatibility
github.com/BioJulia/BED.jl - beb02543b9bb12b1777899ba56f2461ed4393705 authored over 3 years ago by Ciarán O'Mara <[email protected]>Allow trailing newlines for FASTQ files
github.com/BioJulia/FASTX.jl - 215360d88ca3c32fa6b6304eaf85c4a15d385c85 authored over 3 years ago by Jakob Nybo Nissen <[email protected]>github.com/BioJulia/BED.jl - 0fe0abfae9e30d129333493ed6c53019a3854958 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
github.com/BioJulia/BED.jl - 51a7ae90789d73bdaf2b875ac377bc4b9bcdc183 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
github.com/BioJulia/BED.jl - 907c909d5a4a8bcfe5486bdf0577d0aec68f5bf2 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
github.com/BioJulia/BED.jl - ef8b6c9d3405b726c3e4f1b995e494905b635952 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - 1209dcf39c92b6247f4bafe3bd6f615fcc32d1b3 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - 945845044e5bb10da761bd02ba7cc291c3f28c97 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - b6af780a8bc20cc334fb4fe01bdfa6dd1a316b1f authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - 3028ff4c04e740baeccf76bee5ed298457c48acd authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - 7094f816147bcc78105ef18d4f5f2173a83ab6dd authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - 1cf7b259d5058c45c7473d096127da251ccfe91a authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - b70b7603f55ec8837bf6e64c093c3e68ec252f83 authored over 3 years ago by Ciarán O’Mara <[email protected]>
Rename `initialize!` method as `empty!`
github.com/BioJulia/BED.jl - 535e581530ac0298368ee5433f777d060509b517 authored over 3 years ago by Ciarán O'Mara <[email protected]>github.com/BioJulia/BED.jl - 400c1cd2cea57483330d2526900d0bfffe927663 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - 3e694e4512ffaa6c02f3fa891f2adf2e215894a5 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - d5c4752b721a6777f0497378cc45e4e7f1648a8d authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - b45bda43374ca003d84cd13d92aff0a7f1d6b5d0 authored over 3 years ago by Ciarán O'Mara <[email protected]>
github.com/BioJulia/BED.jl - 43bc3f1cd41e2d3eeeae77cda637c357bcdc2911 authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BED.jl - d32557f457d0275fd71991170531401574dda0cd authored over 3 years ago by Ciarán O’Mara <[email protected]>
github.com/BioJulia/BioSequences.jl - 87f806c70a9fa861b7dc3a17f95dcc90654d2019 authored over 3 years ago by Ben J. Ward <[email protected]>
* Refactor internals: Part 1
* Refactor internals 2: Add Alphabet tests
* Refactor interna...
github.com/BioJulia/BioSequences.jl - 9d40795e7ed188e2257d0f455b908b523aedf2ab authored over 3 years ago by Jakob Nybo Nissen <[email protected]>Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
github.com/BioJulia/BioStructures.jl - 609dc738845ccea059feed88b035127a6b2f7197 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>github.com/BioJulia/BioSymbols.jl - 3d796d12a6504a3a9d4495a42c87f239fd848250 authored over 3 years ago by Ben J. Ward <[email protected]>
github.com/BioJulia/BioSymbols.jl - 970189a986f4ddd544496eedbd531085c56857b7 authored over 3 years ago by Ben J. Ward <[email protected]>
Bump version number a major increment
github.com/BioJulia/BioSymbols.jl - 8e6966acfabf0c0b1fe51016b67e820cfb598b31 authored over 3 years ago by Ben J. Ward <[email protected]>github.com/BioJulia/BioStructures.jl - 9983f9066d8dcdba8ab5c00cc6664b95cb366706 authored over 3 years ago by Joe Greener <[email protected]>