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BioJulia

Bioinformatics and Computational Biology in Julia
Collective - Host: opensource - https://opencollective.com/biojulia - Website: https://biojulia.net - Code: https://github.com/BioJulia

prettier tests that will fail

github.com/BioJulia/PopGenCore.jl - 263e5837db70d704e766dfb6b502e23f89347b83 authored about 3 years ago by Pavel Dimens <[email protected]>
downstream popdata changes

github.com/BioJulia/PopGenCore.jl - 7c932a96cf41ff55eea2c023bd3e85b2b18225d9 authored about 3 years ago by Pavel Dimens <[email protected]>
downstream popdata changes

github.com/BioJulia/PopGenCore.jl - d40e9011ada82b5737df9678b8f425412535f227 authored about 3 years ago by Pavel Dimens <[email protected]>
more popdata overhaul

github.com/BioJulia/PopGenCore.jl - 508e78834cf7bf834496b5b781737cbc5aac2c86 authored about 3 years ago by Pavel Dimens <[email protected]>
continued PopData overhaul

github.com/BioJulia/PopGenCore.jl - 6ce1585d8c12103cfbfaf006007c4de0d6b0606e authored about 3 years ago by Pavel Dimens <[email protected]>
overhaul PopData.metadata

github.com/BioJulia/PopGenCore.jl - 2c7f90ccc5cba09bd61df50cba435d5ccc6a4428 authored about 3 years ago by Pavel Dimens <[email protected]>
update bed reader

github.com/BioJulia/PopGenCore.jl - 224902fbce200c55f864c6c94f376ae21547cc9f authored about 3 years ago by Pavel Dimens <[email protected]>
update bed reader with bim fields

github.com/BioJulia/PopGenCore.jl - 2c0193c58849b3383c72c957c3fbc1344af6ff3a authored about 3 years ago by Pavel Dimens <[email protected]>
drop_multiallelic not converting biallelic flag

github.com/BioJulia/PopGenCore.jl - a3509866686f8d3b5fd2e57815b34baa9dbf5443 authored about 3 years ago by Pavel Dimens <[email protected]>
add plink .ped writer

github.com/BioJulia/PopGenCore.jl - b525bf54ad3aef29479704eb4736b0ae5e902b44 authored about 3 years ago by Pavel Dimens <[email protected]>
fix docstrings

github.com/BioJulia/PopGenCore.jl - 7282dabc6b8f4dc84ca70f79e1a035566230be55 authored about 3 years ago by Pavel Dimens <[email protected]>
remove spaces in population names

github.com/BioJulia/PopGenCore.jl - a3f47de9c9c38e84fb9f8ddc0a9c91be795c03f6 authored about 3 years ago by Pavel Dimens <[email protected]>
add filepath truncation for info printing

github.com/BioJulia/PopGenCore.jl - 90fb32aaf61142483391f8fd3b2a6d104c42c49a authored about 3 years ago by Pavel Dimens <[email protected]>
fix testing typos :(

github.com/BioJulia/PopGenCore.jl - f50f1f0466ae3995ba4432452a3e115a38d040fc authored about 3 years ago by Pavel Dimens <[email protected]>
add unit tests

github.com/BioJulia/PopGenCore.jl - 3a449b3125647678c03b8a49ff967edb7ffabe46 authored about 3 years ago by Pavel Dimens <[email protected]>
add missing docstring

github.com/BioJulia/PopGenCore.jl - 18b78f3fcf2675cc08b915d0c1e19de3d7780757 authored about 3 years ago by Pavel Dimens <[email protected]>
fix typos

github.com/BioJulia/PopGenCore.jl - 3e0a9cda47d61242d2dbfa1e1654f226fdc8f95f authored about 3 years ago by Pavel Dimens <[email protected]>
More stuff

github.com/BioJulia/SequenceVariation.jl - 8024d5088953357353cd123eacfecf1c8ef98b16 authored about 3 years ago by Jakob Nybo Nissen <[email protected]>
rm deprecated

github.com/BioJulia/PopGenCore.jl - dd08c3bcdf71c1dad868adbbb64c44fe08e5dcb3 authored about 3 years ago by Pavel Dimens <[email protected]>
Bump codecov/codecov-action from 2.0.3 to 2.1.0

Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 2.0.3 to 2.1.0.
-...

github.com/BioJulia/BioMakie.jl - 90b07eccb435e8787914c665f5f90418471f1887 authored about 3 years ago by dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
add utils unit tests

github.com/BioJulia/PopGenCore.jl - 2fcb41c206a78fde9be11cd97a9e3951daf75eed authored about 3 years ago by Pavel Dimens <[email protected]>
add Conditionals.jl tests

github.com/BioJulia/PopGenCore.jl - 3955bfa38c40327503ea78ad54ec98aa44c96c61 authored about 3 years ago by Pavel Dimens <[email protected]>
fix typo

github.com/BioJulia/PopGenCore.jl - c0ee38f80e9eb440658005ffd77ba61b8815d4d1 authored about 3 years ago by Pavel Dimens <[email protected]>
fix use case of missing lat/long fields

github.com/BioJulia/PopGenCore.jl - 5334cf60d8285e39703d8055c29b3dd20c976665 authored about 3 years ago by Pavel Dimens <[email protected]>
fix add_meta! joins

github.com/BioJulia/PopGenCore.jl - ce37d8cc8b2a26d9208308c737a03b4bd1e13f5e authored about 3 years ago by Pavel Dimens <[email protected]>
replace print loops with join

github.com/BioJulia/PopGenCore.jl - cb265ba51825e607cc8ea3d38c7b38ba5772d7c4 authored about 3 years ago by Pavel Dimens <[email protected]>
compress pooledarrays

github.com/BioJulia/PopGenCore.jl - 27ce15210dec92d1ac60f561a20523c1975e5ac0 authored about 3 years ago by Pavel Dimens <[email protected]>
export PopDataInfo

github.com/BioJulia/PopGenCore.jl - 69a97a80c3950cba53575b9ce453e56ecaea6a01 authored about 3 years ago by Pavel Dimens <[email protected]>
little improvements

github.com/BioJulia/PopGenCore.jl - 514fe58d058a38ddcc6e526cdf158d403fc7a982 authored about 3 years ago by Pavel Dimens <[email protected]>
update tests for CSV 0.9

github.com/BioJulia/PopGenCore.jl - 3a63ea6c621a8f067d2d459ff034015ce515a71f authored about 3 years ago by Pavel Dimens <[email protected]>
address CSV depwarn

github.com/BioJulia/PopGenCore.jl - cdf84904ed0706f1d1737b90181bea52c87d1d54 authored about 3 years ago by Pavel Dimens <[email protected]>
address new CSV test

github.com/BioJulia/PopGenCore.jl - 296efc9c1a7fddf1b0cf3e21c197c0c1ded60f89 authored about 3 years ago by Pavel Dimens <[email protected]>
CompatHelper: bump compat for Pluto to 0.16, (keep existing compat)

github.com/BioJulia/BioMakie.jl - 025821f89843663f55afd77871de66056c38ec85 authored about 3 years ago by CompatHelper Julia <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

github.com/BioJulia/PopGenCore.jl - 8cf51a7ed41d5370b2c5a767fcb8f7f9c702793a authored about 3 years ago by Pavel Dimens <[email protected]>
fix calls

github.com/BioJulia/PopGenCore.jl - 223865e7d917e9a9b44a8a81d101e04772d284c3 authored about 3 years ago by Pavel Dimens <[email protected]>
Merge pull request #15 from BioJulia/compathelper/new_version/2021-09-09-00-53-11-732-00615836688

CompatHelper: bump compat for CSV to 0.9, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - 467e266c45952e8cf0d7a073c6a104001c3e7092 authored about 3 years ago by Pavel V. Dimens <[email protected]>
ploidytext improvement

github.com/BioJulia/PopGenCore.jl - 53d4eb187286fce437325661eb7cd44fe564de4b authored about 3 years ago by Pavel Dimens <[email protected]>
add info field and constructors to PopData

github.com/BioJulia/PopGenCore.jl - 47926a3e5639f57db0365bef808e67f7c082c347 authored about 3 years ago by Pavel Dimens <[email protected]>
fix the macros so simply

github.com/BioJulia/PopGenCore.jl - a474a39ecf45dd4e2df561711a0c2f8788f52670 authored about 3 years ago by Pavel Dimens <[email protected]>
Set up CI with Azure Pipelines

[skip ci]

github.com/BioJulia/BioMakie.jl - 6bc771b54f531b916d98fc47b39841c65e7c7e28 authored about 3 years ago by Dan Kool <[email protected]>
Merge pull request #373 from kool7d/master

in2

github.com/BioJulia/BioMakie.jl - 0d257f733115ee10581387341b7c436c5478352c authored about 3 years ago by Dan Kool <[email protected]>
Merge pull request #371 from kool7d/compathelper/new_version/2021-08-25-00-50-32-827-00155560591

CompatHelper: add new compat entry for Meshing at version 0.5, (keep existing compat)

github.com/BioJulia/BioMakie.jl - 7ec0ac18e4695f45a2fce15c023cf93368609a77 authored about 3 years ago by Dan Kool <[email protected]>
Merge pull request #372 from kool7d/master

in1

github.com/BioJulia/BioMakie.jl - db793b92f4f9971bd460d1dda2728460aad70865 authored about 3 years ago by Dan Kool <[email protected]>
CompatHelper: bump compat for CSV to 0.9, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - d63294805ba5164a781a2e1002e9f49c660c631a authored about 3 years ago by CompatHelper Julia <[email protected]>
Created using Colaboratory

github.com/BioJulia/BioMakie.jl - 77b91b1f897d546c11b9d5fd23dba1c63719d379 authored about 3 years ago by Dan Kool <[email protected]>
housekeeping

github.com/BioJulia/PopGenCore.jl - b3fb63014563e49f1d178cbb45615c6cbc2f016e authored about 3 years ago by Pavel Dimens <[email protected]>
housekeeping

github.com/BioJulia/PopGenCore.jl - 869dabf2005f3a7755aeb038965e156c2f4796c2 authored about 3 years ago by Pavel Dimens <[email protected]>
fix test imports

github.com/BioJulia/PopGenCore.jl - ddedb7e5671630356b29fd8be6f22b72be7f530d authored about 3 years ago by Pavel Dimens <[email protected]>
fix tests

github.com/BioJulia/PopGenCore.jl - 55311091c09bbe1f338adefb481336b614c4a0ca authored about 3 years ago by Pavel Dimens <[email protected]>
add filter and filter!, update exclude! and keep!

github.com/BioJulia/PopGenCore.jl - afc5deba1ef4af7225ae4da62e84ff622647b8f0 authored about 3 years ago by Pavel Dimens <[email protected]>
update dataset macros

github.com/BioJulia/PopGenCore.jl - d87f500516ba3d4dfbc410308504b6d47c454062 authored about 3 years ago by Pavel Dimens <[email protected]>
small logic update

github.com/BioJulia/PopGenCore.jl - 61a7032289fba6e25eebd11f8574330213fc1c2c authored about 3 years ago by Pavel Dimens <[email protected]>
add name pool check to reduce redundancy

github.com/BioJulia/PopGenCore.jl - bd7ab859fb03964e3ec723845e4ca510b29390e8 authored about 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

github.com/BioJulia/PopGenCore.jl - 1128e9efc97fa835526da256b4c5d1ea5d3dab54 authored about 3 years ago by Pavel Dimens <[email protected]>
add file existence checks

github.com/BioJulia/PopGenCore.jl - 1d897a13bae7c962023fac066bda0064e08f5bba authored about 3 years ago by Pavel Dimens <[email protected]>
add getindex filtering of PopData

github.com/BioJulia/PopGenCore.jl - 601a5b6b096470ab6250677a1084553f95e2b4ba authored about 3 years ago by Pavel Dimens <[email protected]>
Merge pull request #13 from BioJulia/compathelper/new_version/2021-09-08-00-49-49-971-03306261622

CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - 3244a6d68142ff8f596860a2f421d8f44827345e authored about 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #12 from BioJulia/compathelper/new_version/2021-09-08-00-49-40-818-02041722700

CompatHelper: add new compat entry for VariantCallFormat at version 0.5, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - 8c981ca0d4062cc732c2c02412b25fc2148f0d8f authored about 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - bfe0ad1b8198cc180623bf3161a04a06a4020a46 authored about 3 years ago by CompatHelper Julia <[email protected]>
CompatHelper: add new compat entry for VariantCallFormat at version 0.5, (keep existing compat)

github.com/BioJulia/PopGenCore.jl - 54e558bfb3c4e29bebde6ad61233d1d655017f48 authored about 3 years ago by CompatHelper Julia <[email protected]>
add bim/fam file checks and handling

github.com/BioJulia/PopGenCore.jl - 368d1276e0bbda7195b0d0eda05f332243729802 authored about 3 years ago by Pavel Dimens <[email protected]>
update plink reader, rm sorting from PopData constructor

github.com/BioJulia/PopGenCore.jl - 6459c3c22542153298ed54352b8edd4774ce3156 authored about 3 years ago by Pavel Dimens <[email protected]>
add some convenience getindex

github.com/BioJulia/PopGenCore.jl - f5757305461b0f4be9980fbec904859ea7ec7109 authored about 3 years ago by Pavel Dimens <[email protected]>
update io testing

github.com/BioJulia/PopGenCore.jl - 0129ce71f7e9afc84a5dde58e57182142e719c08 authored about 3 years ago by Pavel Dimens <[email protected]>
rm accidental copy

github.com/BioJulia/PopGenCore.jl - 38562179d6647f0fefc696e5f58a59be17ad11b4 authored about 3 years ago by Pavel Dimens <[email protected]>
update vcf support

github.com/BioJulia/PopGenCore.jl - 6abe94e61fa0f0e00e0ef3c67c6e1afeaa1aacfc authored about 3 years ago by Pavel Dimens <[email protected]>
update module init

github.com/BioJulia/PopGenCore.jl - ed979b608d93082a7ec16fbdd51bc180ce372dfb authored about 3 years ago by Pavel Dimens <[email protected]>
add VCF and Zlib as standard deps, rm requires

github.com/BioJulia/PopGenCore.jl - ccc99563b0f369cf647aeefc56305608faec400d authored about 3 years ago by Pavel Dimens <[email protected]>
more plink stuff

github.com/BioJulia/PopGenCore.jl - 26b3dc0f4cceea2e214be5e4075bc563218de2bd authored about 3 years ago by Pavel Dimens <[email protected]>
begin plink io reader

github.com/BioJulia/PopGenCore.jl - fdab733136d65b07870d6ef4bf41ddfa96ea2430 authored about 3 years ago by Pavel Dimens <[email protected]>
typo fix

github.com/BioJulia/PopGenCore.jl - 9a12b8082b5c65ed8a87f41433762bdb709d511e authored about 3 years ago by Pavel Dimens <[email protected]>
add PopGenCore compat

github.com/BioJulia/PopGen.jl - 317b35eb7cc9a93c4b2d43826c04640479a72f02 authored about 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

github.com/BioJulia/PopGenCore.jl - 5f57f9e9293516924c829063dae13a128bdf7289 authored about 3 years ago by Pavel Dimens <[email protected]>
fix module load

github.com/BioJulia/PopGenCore.jl - 874504bb297287037ce48a4ef21e481c48a01516 authored about 3 years ago by Pavel Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGenCore.jl - 0d7e9dfccceeda6607e4fff9e801c063fbdf929f authored about 3 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' of https://github.com/BioJulia/PopGenCore.jl into dev

github.com/BioJulia/PopGenCore.jl - 088a0a3898dc84a57d4b2c54060dc53ca60f98b1 authored about 3 years ago by Pavel Dimens <[email protected]>
various fixes

github.com/BioJulia/PopGenCore.jl - 49d00f8222e7197ddddc731d1606ba5a72d41d78 authored about 3 years ago by Pavel Dimens <[email protected]>
Update README.md

github.com/BioJulia/PopGenCore.jl - ba909c83917eaf670329427c68600901662c9d7d authored about 3 years ago by Pavel V. Dimens <[email protected]>
fix io things

github.com/BioJulia/PopGenCore.jl - 2ccfebaabc6b79a0c7ec76f88dfef238f766f983 authored about 3 years ago by Pavel Dimens <[email protected]>
add Random dep

github.com/BioJulia/PopGenCore.jl - f1209808b7d514ac51825f63d43b96465b47f006 authored about 3 years ago by Pavel Dimens <[email protected]>
generic-ify the function signature

github.com/BioJulia/PopGenCore.jl - 5a7fb14cb8f2089efb0c9c6a0a3a832d875c9eb4 authored about 3 years ago by Pavel Dimens <[email protected]>
clarify docstring

github.com/BioJulia/PopGenCore.jl - e5526a0ab092e7f48dcdd1c6e6df8b5173b0064f authored about 3 years ago by Pavel Dimens <[email protected]>
add random

github.com/BioJulia/PopGenCore.jl - 761ae7252bc56ad888efc639d7fcce29da972c36 authored about 3 years ago by Pavel Dimens <[email protected]>
reorganize repo

github.com/BioJulia/PopGenCore.jl - 626f22d7e2822bb792cdd613592d0a386754b7b6 authored about 3 years ago by Pavel Dimens <[email protected]>
speed up strict_shuffle

github.com/BioJulia/PopGenCore.jl - a7006ab39fd1339b106f917c0a7626161634801c authored about 3 years ago by Pavel Dimens <[email protected]>
silly typo

github.com/BioJulia/PopGenCore.jl - 2fc0663445b2b9362707afd674244a80f7f7ff8d authored about 3 years ago by Pavel Dimens <[email protected]>
add GenotypeUtils to include()

github.com/BioJulia/PopGenCore.jl - 8d3e519fac089619327cd0c7dda3faf29102f83a authored about 3 years ago by Pavel Dimens <[email protected]>
huge PopGenCore migration and upstreaming

github.com/BioJulia/PopGen.jl - 70791b0db9407951363bdd27c0dfc8a1e79264ee authored about 3 years ago by Pavel Dimens <[email protected]>
move things around

github.com/BioJulia/PopGenCore.jl - 97ecb3c6bcfa0502787d46b1f8f156bd84922362 authored about 3 years ago by Pavel Dimens <[email protected]>
fix metadatadata bug :(

github.com/BioJulia/PopGenCore.jl - 3626083184d20c915bdb857c0d2aa936a67821e3 authored about 3 years ago by Pavel Dimens <[email protected]>
organzation and exports

github.com/BioJulia/PopGenCore.jl - babc7054c936d5f3e62f14260f0b274e05ae94bb authored about 3 years ago by Pavel Dimens <[email protected]>
migrate deps to PopGenCore

github.com/BioJulia/PopGen.jl - 7eff20cc0307df56e19d2612f613c2dff04b7637 authored about 3 years ago by Pavel Dimens <[email protected]>
migrate permutations

github.com/BioJulia/PopGenCore.jl - 618c4fc12bb96d265df2dc6e2c7b56606e10aa1d authored about 3 years ago by Pavel Dimens <[email protected]>
export most functions

github.com/BioJulia/PopGenCore.jl - 930ad3986e193f4e92ba96fcadb7d625dce9e810 authored about 3 years ago by Pavel Dimens <[email protected]>
improve docstring

github.com/BioJulia/PopGenCore.jl - c9aa885d8449eacbaacef4a16180a7c4a3b34b25 authored about 3 years ago by Pavel Dimens <[email protected]>
fix structure write bug

github.com/BioJulia/PopGenCore.jl - 4fff347c51ed396f43e138b06fceab261d2acb79 authored about 3 years ago by Pavel Dimens <[email protected]>
c1

github.com/BioJulia/BioMakie.jl - 1aaba717367517d19eccd2f9525dd2f17e417cff authored about 3 years ago by Daniel Kool <[email protected]>
Merge branch 'master' of https://github.com/BioJulia/SubstitutionModels.jl

github.com/BioJulia/SubstitutionModels.jl - ab6116f34e1bfc3c96c8a31f3bc8b5b18f9993b0 authored about 3 years ago by Justin Angevaare <[email protected]>
Doc generation on publishing release

github.com/BioJulia/SubstitutionModels.jl - ab09a15a265de582171ffefe8a7dc9756d2eec93 authored about 3 years ago by Justin Angevaare <[email protected]>
Merge pull request #28 from BioJulia/docfixup

Constructor consistency/documentation fix

github.com/BioJulia/SubstitutionModels.jl - 7b8b3313bbad80fa408c01a7b717820d05f48823 authored about 3 years ago by Justin Angevaare <[email protected]>