Ecosyste.ms: OpenCollective
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BioJulia
Bioinformatics and Computational Biology in Julia
Collective -
Host: opensource -
https://opencollective.com/biojulia
- Website: https://biojulia.net
- Code: https://github.com/BioJulia
github.com/BioJulia/SequenceVariation.jl - 44aa41e6285ae3855f7e4495dd9baa582cef4116 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - da2cbbd5282b93b6c8399c943734057fa55d61f0 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - f49220782b8c6535d864ae55815c11389c605e9f authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - e8457e4241467448d449387bae6d6d0b2a50fef3 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - f08d6eb99167f1a82185bf9626c425b701e874c8 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - cab3029bc6cdc8821eaa08c3b5d857a0d886b079 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - a6ad47a5687b89e15de444582200d8924deadf1a authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - ea25ab87dcc6d8c03748af9db830c05dc485b45d authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 22d460b15a8d366594e32a7c026ded20cfeb725c authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - b36ab69c728bf287219e5ff9fea1926cb0cdb7ae authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - fb5b7dfacf695a5df5540271d068690afec0e3e1 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 673481b40f98049c0d4c37f50a9e28a01c4d4965 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 3b2730b5c1432d41a35f835f0130ec8e737506de authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - cb53defe9adaa652af8caf5ff1709ca5566a2fd4 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - a573693737e2ca4edc3f11d65e652b2fd0ce0d1e authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 3f631ace8fc1979ddf3104c143f4582760c97b4e authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - ba9f0e8fb155b810771ea6261b6526145d8e6215 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 2719c438f3261d6b0345e70afd3ffff6a97b7543 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 386acba8ab0a17879ac4e1afb884d38fcd8be87a authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 134ee771b9963819b336655c552b70278eeab775 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 6f7110caec1894d89b5a41b4d5688d4fd8701760 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - dd405c5f4b75d8d201a684165da1747eac039db0 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 3ef4a92ba268faa509547bb9774d070aba38cdd5 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - d29764d2bce83822b83e4d8581d7eceb25b43f63 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
There is no platform-specific code in this package, so this just slows down
CI with no benefit
Per Blue style, exports should be one per line, and appear immediately
after using statements. R...
github.com/BioJulia/SequenceVariation.jl - 9f9d0899bdff26f936bc90e2b99ec2b395bf5071 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - ef4460bbbf0172cf68edb65397616dba8b7fa0f0 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - f1baf27865125b6d86ff991ce2e8a62740d5eb19 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 82ba8386147f6b60d0dc58dd868f941e2d2bf4ce authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 37965ac7eb80992a0580d86b7e4d9a67b65e752f authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 8c2dd271f3f51c14b945fb1a3d6c8e416f8a4a27 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - fb9ab68cca925e138fd9dc1ebbccdb23c6257f89 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 8ae09aa9a1bbd0376d51483b4134d968b242863e authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 1f2b116518ebea297c71e69e026d25fc4efbbffc authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 6510ee3fc030992f93562c4c072b57f2b2c621c2 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 2a7d61e43d61d8ace9cfbe7fb157a5e707683945 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - cb1c429610e214de017cb57726ecc539669dc24b authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 2f4f5fb5aeeeaf42d23dd740de8e6d124c7499cb authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/BioAlignments.jl - ceb3fe6ce85c794adde877b0bd048905557dc1e2 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
Improve precompilation by operating on files instead of IOBuffers. This is more
representative o...
Update Project.toml
github.com/BioJulia/BioMakie.jl - 747b377406393cb03f7ba1eb6c0d3f6b6ab9cd73 authored almost 2 years ago by Dan Kool <[email protected]>github.com/BioJulia/BioMakie.jl - 85cf66fb60c6c885c6b908bc30c9c97a7b662f4f authored almost 2 years ago by Dan Kool <[email protected]>
update project
github.com/BioJulia/BioMakie.jl - 97a04d38fc39e1be514e3dbde4bfbda890c642b8 authored almost 2 years ago by Dan Kool <[email protected]>github.com/BioJulia/BioMakie.jl - ba5ae5229d8f573c3df979355eb82983d36230c0 authored almost 2 years ago by Dan Kool <[email protected]>
Dev
github.com/BioJulia/BioMakie.jl - 4b4dedd388d16d7ddba6cdb351feb27d461a9a4a authored almost 2 years ago by Dan Kool <[email protected]>github.com/BioJulia/BioMakie.jl - 02ccc442462436520e1e193fbb3e0462a375b232 authored almost 2 years ago by kool7d <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 73d2781ee945ebc64f6b5599ef0838f4cab585e9 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 6ba583de4f42f0fc711085705c024e441b265d67 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - dd00231840f0288a30c6da2c63925a581e559204 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - f9e76d60d6d23530b449062e4e5ac7998f25a978 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 17f4cd6f395610f30ee0856f55a473b830378455 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 128a5445ad566ee4c0bf9f9d0331ec1cd1e5e41c authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 5be4dce200ad3e4f9ea121c9159e5ec30d7c6eb1 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - f9058c5cb393a2a616535843eba15a3c2ed0f3b4 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 3b61ccefb5eb783d819468680bc77bb8d198ec3d authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
Testing indicates that some Variants (particularly those with insertions
and/or clips at the sen...
github.com/BioJulia/SequenceVariation.jl - abff6692d49052e88966d40fdb92194a7290b0e9 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 91c3acc85ee9c9aec558b94f3b41fa38d9d84931 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
Added support for R. Grantham's substitution matrix based on chemical properties from his 1974 p...
github.com/BioJulia/BioAlignments.jl - 26be95a2e9a7776031bd910fbd7b61892403ff6e authored almost 2 years ago by Kapara newbie <[email protected]>github.com/BioJulia/.github - 9d9210005816907bd4b530cbf4ebd5b32f883086 authored almost 2 years ago by Sabrina Jaye Ward <[email protected]>
When materializing a seqview, a slice of the underlying buffer is copied
directly, for efficien...
github.com/BioJulia/SequenceVariation.jl - 00495d4e14537454a5f0a952d5e9fc29d24e1279 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - b45081a56e1602dc546ee0f75787611b57726418 authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/SequenceVariation.jl - 3ed27f0c4e53c2662da4ddd1af224fed733de44c authored almost 2 years ago by Thomas A. Christensen II <[email protected]>
I have encountered some cases where having a non-parameterized vector can
crash a downstream pro...
github.com/BioJulia/BioMakie.jl - d6372772fd16ce09e8f8550beefeb8dcc86b2a48 authored almost 2 years ago by Dan Kool <[email protected]>
BioSequences pirated BioSymbols by overloading `gap`, `isambigous`, `isgap` and
`iscertain`. Re...
github.com/BioJulia/BioSymbols.jl - e026408ff8ed1fbe32c3ae0051d09f7bd411862b authored almost 2 years ago by Jakob Nybo Nissen <[email protected]>
github.com/BioJulia/BioMakie.jl - cc71c268e8fadd4e6daef4a03c2b62905805d19d authored almost 2 years ago by Dan Kool <[email protected]>
github.com/BioJulia/BioMakie.jl - fa0fec9a84dd0d7648e44482d19212f4e49ac8fa authored almost 2 years ago by Dan Kool <[email protected]>
github.com/BioJulia/GenomicAnnotations.jl - cb54afc2247361147c5d89ed0d776a49f8b88559 authored almost 2 years ago by Xiangting Li <[email protected]>
github.com/BioJulia/BioMakie.jl - bc8f62469930210f348f5249ee8130ac638082bc authored almost 2 years ago by Dan Kool <[email protected]>
github.com/BioJulia/BioMakie.jl - 80af26ecda74732f927a3620cfd54ee53490fb75 authored almost 2 years ago by Dan Kool <[email protected]>
CompatHelper: bump compat for MolecularGraph to 0.12, (keep existing compat)
github.com/BioJulia/BioMakie.jl - 99d0309bfa8cb4d537737e90fea5ace60de14780 authored almost 2 years ago by Dan Kool <[email protected]>github.com/BioJulia/BioMakie.jl - 36cd5c8acd07d811684d12134f4d26cd221c7412 authored almost 2 years ago by Dan Kool <[email protected]>
CompatHelper: add new compat entry for Makie at version 0.18, (keep existing compat)
github.com/BioJulia/BioMakie.jl - 94a71690a2a1da17c973a223f2135eb67d7d6d3c authored almost 2 years ago by Dan Kool <[email protected]>github.com/BioJulia/BioMakie.jl - f4a142fa63c783c1227da55112107f7b7b693f86 authored almost 2 years ago by Dan Kool <[email protected]>
github.com/BioJulia/BioSequences.jl - e4c89976320abff2a2c24800142296200232648c authored about 2 years ago by Jorge Fernandez-de-Cossio-Diaz <[email protected]>
github.com/BioJulia/XAM.jl - 50039e749f39bb7b29d28ccd808331493767eec7 authored about 2 years ago by Ciarán O'Mara <[email protected]>
Added method for handling different bam index types.
github.com/BioJulia/XAM.jl - 8272cea71efba979b544c9f54a55cc6f26591d9e authored about 2 years ago by Ciarán O'Mara <[email protected]>github.com/BioJulia/XAM.jl - bda532e2ceb92e1dce80194d78cab6a25288213b authored about 2 years ago by Ciarán O'Mara <[email protected]>
Release v0.3.1
github.com/BioJulia/XAM.jl - 22f939ffbe3b3b765a3b47c43fd7b795fe433b54 authored about 2 years ago by Ciarán O'Mara <[email protected]>github.com/BioJulia/BioMakie.jl - 8ce5b18b55615b44968e1e2c728e4addae22480e authored about 2 years ago by CompatHelper Julia <[email protected]>
github.com/BioJulia/XAM.jl - fe83a749d20132b7805e611917817b91c28a00e7 authored about 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/XAM.jl - 1c57e9b0e2e8b0f87edc39387fd436ddc374a185 authored about 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/XAM.jl - e2b22becf463acdef1fcfbfd19d2b54411f8a1f0 authored about 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/XAM.jl - 286e271e9135b4379996e69deb0c6726eb4c5a01 authored about 2 years ago by Jonathan Bieler <[email protected]>
github.com/BioJulia/XAM.jl - 93a6b60d26e2b0c70ea8755d5b0913c1df7bb88d authored about 2 years ago by Jonathan Bieler <[email protected]>
github.com/BioJulia/BioMakie.jl - 2ca5eb2ecd9afa878ada1bf6b8e73b2161c961ea authored about 2 years ago by CompatHelper Julia <[email protected]>
github.com/BioJulia/XAM.jl - 32e3213ee8dc008084e0e3b60a51e3993f8a71dc authored about 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/XAM.jl - f7b9d9fa75ca686c6412fdecd6a012f1dfaa7fcc authored about 2 years ago by Thomas A. Christensen II <[email protected]>
github.com/BioJulia/XAM.jl - 9720fd0fcd342c10791c7e1b620653d2362845ee authored about 2 years ago by Thomas A. Christensen II <[email protected]>
Rather than keep a copy of the BioAlignments cigar constructor embedded in
this function, have i...
Release v0.3.0
github.com/BioJulia/XAM.jl - 946e77a7343bff28da35360820655e9960236b0f authored about 2 years ago by Thomas A. Christensen II <[email protected]>Co-authored-by: Ciarán O'Mara <[email protected]>
github.com/BioJulia/XAM.jl - 0c4b3f5dd00de71a96d92031db0cdf14534352ce authored about 2 years ago by Thomas A. Christensen II <[email protected]>Co-authored-by: Ciarán O'Mara <[email protected]>
github.com/BioJulia/XAM.jl - 2e739e2d8d0181b5e3fb1e1c8c6b1ecb4f2d7848 authored about 2 years ago by Thomas A. Christensen II <[email protected]>Co-authored-by: Ciarán O'Mara <[email protected]>
github.com/BioJulia/XAM.jl - 8d9ccc91f2953ab82b5ceb5131776ecd0da071a2 authored about 2 years ago by Thomas A. Christensen II <[email protected]>Co-authored-by: Ciarán O'Mara <[email protected]>
github.com/BioJulia/XAM.jl - a7a8e53e4d211f45594213c5fbf5ef2f27286184 authored about 2 years ago by Thomas A. Christensen II <[email protected]>github.com/BioJulia/XAM.jl - 46fcf71f96ef03de906ea7f7ae7fea9a1801e098 authored about 2 years ago by Thomas A. Christensen II <[email protected]>